Scos027015.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- Far1
- Assembly
- GCA_949820665.1
- Location
- OX463311.1:240298-268419[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.3e-05 0.009 17.6 1.1 3 23 130 150 128 150 0.95 2 20 2.5e-05 0.0027 19.3 1.0 1 23 156 178 156 178 0.98 3 20 2.4e-05 0.0026 19.4 2.0 1 23 184 206 184 206 0.98 4 20 2.8e-07 3e-05 25.4 1.5 1 23 212 234 212 234 0.96 5 20 7.4e-05 0.008 17.8 0.3 1 23 240 262 240 262 0.96 6 20 1.6e-05 0.0018 19.9 3.1 2 23 269 290 268 290 0.97 7 20 1.6e-05 0.0018 19.9 3.1 2 23 318 339 317 339 0.97 8 20 5.5 6e+02 2.5 0.7 1 13 345 357 345 359 0.87 9 20 1.6e-05 0.0018 19.9 3.1 2 23 365 386 364 386 0.97 10 20 5.5 6e+02 2.5 0.7 1 13 392 404 392 406 0.87 11 20 1.6e-05 0.0018 19.9 3.1 2 23 412 433 411 433 0.97 12 20 5.5 6e+02 2.5 0.7 1 13 439 451 439 453 0.87 13 20 1.6e-05 0.0018 19.9 3.1 2 23 459 480 458 480 0.97 14 20 5.5 6e+02 2.5 0.7 1 13 486 498 486 500 0.87 15 20 1.6e-05 0.0018 19.9 3.1 2 23 506 527 505 527 0.97 16 20 5.5 6e+02 2.5 0.7 1 13 533 545 533 547 0.87 17 20 1.6e-05 0.0018 19.9 3.1 2 23 553 574 552 574 0.97 18 20 0.0014 0.15 13.8 5.3 1 23 580 602 580 602 0.98 19 20 1.8e-05 0.002 19.7 2.7 1 23 608 630 608 630 0.99 20 20 0.0016 0.17 13.6 0.7 1 23 636 658 636 658 0.95
Sequence Information
- Coding Sequence
- ATGGCCGTGGCTGTGCCTAACAAAGACTTAGAAAGTTGTTGCCGAACTTGTCTGAATGATGTCTCCAATAGGATGTATAATATCTTCAATGTGGAGCAGAATACCGTGACTGTCGCCGAGATGCTGAACCTCTGCACATCCTTGAAGATTGTCAAAGAGGACGGGCTTCCTAAGCAACTTTGTGGTAGCTGCTACAATTGTTTGATGAGCTTTTATGACTTTAAAAAACTTGCAGAGAATATAGATGTACAACTTAGGAATCAGATTATAAACCACCTTGCAGAAGGAGAAGCTAAACCATCCATCAAAGTAAAGGTTGAACCTGTCACCAAACAGGAGCATGAATCTCATATGAGGAAACATACCAAAAAAAACAGAGTTCTGGCTTGTTCTATTTGTGGAAAAGTGTTTAAGAAAGTTAGCCATGTGAAGAGGCATGAGTTGAGCCATGAAGTGAACCGTCCATTTCAATGTACTGCATGTCCAAAGAGATTCAACACGGAAAGTCTTTTGAATGAGCATCAGAATAAACACAACAAGTTGAAGCCTCACACATGTCCGATGTGTAACAAGGCGTTTGCGCACGTGTCCACTCTGTCCACTCACATCAAGGTGCACACTCGGGAGAAGCCGTTCCTCTGCCCCACTTGCGGGAAGAAGTTTGACTCCAGCACCAACCTGAACCAGCACATGCGGAGACATGCCGGTCTCAAGATGTTTGCATGTACAATGTGTCCGCGGACATTTGTCAGTAAAGgTGAATTGAATTCCCACAATATAACGCACACTCGGTCCCCCGTGTGGCGCTGCGAGACATGCGGAGCGTCCTTCTCACACAAGAAGAGCATGCAGCAACACATGCGGCGACACTCCGGCATCAAGCCGCACCAGTGCGACACCTGCCCTATGAggtacacactcacacacacacacactcggtCCCCCGTGTGGCGCTGCGAGACATGCGGAGCGTCCTTCTCACACAAGAAGAGCATGCAGCAACACATGCGGCGACACTCCGGCATCAAGCCGCACCAGTGCGACACCTGCCCTATgaggtacacacacacacacactcggtCCCCCGTGTGGCGCTGCGAGACATGCGGAGCGTCCTTCTCACACAAGAAGAGCATGCAGCAACACATGCGGCGACACTCCGGCATCAAGCCGCACCAGTGCGACACCTGCCCTATgaggtacacacacacacacactcggtCCCCCGTGTGGCGCTGCGAGACATGCGGAGCGTCCTTCTCACACAAGAAGAGCATGCAGCAACACATGCGGCGACACTCCGGCATCAAGCCGCACCAGTGCGACACCTGCCCTATgaggtacacacacacacacactcggtCCCCCGTGTGGCGCTGCGAGACATGCGGAGCGTCCTTCTCACACAAGAAGAGCATGCAGCAACACATGCGGCGACACTCCGGCATCAAGCCGCACCAGTGCGACACCTGCCCTATgaggtacacacacacacacactcggtCCCCCGTGTGGCGCTGCGAGACATGCGGAGCGTCCTTCTCACACAAGAAGAGCATGCAGCAACACATGCGGCGACACTCCGGCATCAAGCCGCACCAGTGCGACACCTGCCCTATgaggtacacacacacacacactcggtCCCCCGTGTGGCGCTGCGAGACATGCGGAGCGTCCTTCTCACACAAGAAGAGCATGCAGCAACACATGCGGCGACACTCCGGCATCAAGCCGCACCAGTGCGACACCTGCCCTATgagGTTCCTGACGAAGGACCACCTGAAGCGCCACTACCGCATCCACACGGGCGAGAAGCCGTACAAGTGCGCGCACTGCGAGCGAGCCTTCACGCAGAGCAACGACCTCGTCAAGCACAAGCGCTCGCATCTAGGAGAAAACATTTATAAATGCACGGAGTGCGCGGAGGGCTTCCGACTCAAGAGCGAGCTGCGCCAGCACGAGACGCAGCATTACGTCATCACACGCACACACGCGCACGCGCACGCACACGCGCCCGCCGTCACTCTACACGGCGACGCGCACGCACACGACGATGCCGCGCACGCTATTGGCCGAGCTGAcgGGGTAGCAAACATTGAGATGAGCCACCTGGACAGCTCAGTTCCGGGTATACCGGACTTCTACCGGGGCAAGTCCGTCTTCATCACCGGAGGACCTGGATTCATGGGGAAAGTTCTTGTGGAAAGACTTCTGGCTACGTGTCCTGACGTTGGCAACCTCTACCTACTgatgagagaaaagaaaaacCTCAGTCCTGGACAACGTCTGGAGCAGCTGAAACAGAGTAAGTTATTCGAGGTTCTCCGAGCGAAGAATCCTCGCCAGCTCAACAAGATAGTCGCCATCAGCGGAGACGTCAGCAAACCACAGCTCGGCTTCTCCGCGGATGATCGGGAGAAACTCAAGGAGGTGTCGGTGATCTTCCACGCGGCAGCATCATTATCGATGATGGAACCTTTGAAGGACTCTGTACCCAGCAACCTTCGACTCACGATGGATCTACTGGCCCTGGGAGACACGCTTCCTAAACTTGAAgtttttatGCATGTCTCGACCATATACAGCAACGAAGATTTGACCAGGATTGAGGAGAAAGTGTACCCGCCTCCAATGGAGCTGACAACTCTTCTTGATTTGATGGAAAGCCAGGATTTGGATAAAAAGCAGGAGAAAAAGATAATGGGAGTAAAGTCCAATAGCTACGTGTTCACCAAGGCGATGGCGGAGCACGAGGTCCTCAAACATGGATGCTCCAACTTCGCCATCGGCGTGTTCAGACCTGGCATAGTGGTATGCACAGTGCGGGACCCATTCCCCGGCTGGATCGAGAACCTGAACGGGCCCAGCGGAGTCATCGCCAACGTCAGCCAAGGGCTGCTCAAGGTGTTCCCGGTCAGGGCGTCTGCGCGGGCGGACCTGGTGCCTGTTGATATCACCATAGACACGCTCATCGCCGCCGCCTGGGAGCTAGCTGCAGACAGGCCCGATCAAGTGCGCGTGTACAACGGCACGGTCCAGGAGAGCCCCATCAGGTGGCGGTTCTTCCGCGACGCCGTCAACGAGCTGGCGGTGAAGTACCCCTCCCGCCACGCCGTCTCCTTCCCGCACTGGCGGATACACCACAACAGGTATCTCCAGAGGATATTACAAATCTTGTTGCAAACCTTACCAATATATCTAATCGATTACACCATgacaatatttaaaagaaaatacaaGCTTATAACACAGCTTAAGAAGGTTCATGAAATGGGGGAATCTGTGCATCCTTTCATTACCAAAGATTTCCAGTTTGAGAATGAGAACGTGCAGAAACTCAGACGCAGGCTCTCTGAGAAGGACAAAGCGACGTTCAACTTAAACCCTATGGTAGATTGGCATGAGGTGATGCTGACCCTGGTGCGAGGAACCAGGAGGCACGTGCTGCAGGAGCCGGACGAGACTCTCGACCAGGCGAGAGCAAGAGTTCGCAGGTGA
- Protein Sequence
- MAVAVPNKDLESCCRTCLNDVSNRMYNIFNVEQNTVTVAEMLNLCTSLKIVKEDGLPKQLCGSCYNCLMSFYDFKKLAENIDVQLRNQIINHLAEGEAKPSIKVKVEPVTKQEHESHMRKHTKKNRVLACSICGKVFKKVSHVKRHELSHEVNRPFQCTACPKRFNTESLLNEHQNKHNKLKPHTCPMCNKAFAHVSTLSTHIKVHTREKPFLCPTCGKKFDSSTNLNQHMRRHAGLKMFACTMCPRTFVSKGELNSHNITHTRSPVWRCETCGASFSHKKSMQQHMRRHSGIKPHQCDTCPMRYTLTHTHTRSPVWRCETCGASFSHKKSMQQHMRRHSGIKPHQCDTCPMRYTHTHTRSPVWRCETCGASFSHKKSMQQHMRRHSGIKPHQCDTCPMRYTHTHTRSPVWRCETCGASFSHKKSMQQHMRRHSGIKPHQCDTCPMRYTHTHTRSPVWRCETCGASFSHKKSMQQHMRRHSGIKPHQCDTCPMRYTHTHTRSPVWRCETCGASFSHKKSMQQHMRRHSGIKPHQCDTCPMRYTHTHTRSPVWRCETCGASFSHKKSMQQHMRRHSGIKPHQCDTCPMRFLTKDHLKRHYRIHTGEKPYKCAHCERAFTQSNDLVKHKRSHLGENIYKCTECAEGFRLKSELRQHETQHYVITRTHAHAHAHAPAVTLHGDAHAHDDAAHAIGRADGVANIEMSHLDSSVPGIPDFYRGKSVFITGGPGFMGKVLVERLLATCPDVGNLYLLMREKKNLSPGQRLEQLKQSKLFEVLRAKNPRQLNKIVAISGDVSKPQLGFSADDREKLKEVSVIFHAAASLSMMEPLKDSVPSNLRLTMDLLALGDTLPKLEVFMHVSTIYSNEDLTRIEEKVYPPPMELTTLLDLMESQDLDKKQEKKIMGVKSNSYVFTKAMAEHEVLKHGCSNFAIGVFRPGIVVCTVRDPFPGWIENLNGPSGVIANVSQGLLKVFPVRASARADLVPVDITIDTLIAAAWELAADRPDQVRVYNGTVQESPIRWRFFRDAVNELAVKYPSRHAVSFPHWRIHHNRYLQRILQILLQTLPIYLIDYTMTIFKRKYKLITQLKKVHEMGESVHPFITKDFQFENENVQKLRRRLSEKDKATFNLNPMVDWHEVMLTLVRGTRRHVLQEPDETLDQARARVRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -