Scos020913.2
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463306.1:15739730-15749119[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.011 1.1 11.0 1.6 3 23 706 727 705 727 0.96 2 24 5.4 5.8e+02 2.5 1.1 4 23 1114 1135 1112 1135 0.84 3 24 0.27 29 6.6 0.3 1 22 1140 1161 1140 1161 0.95 4 24 8.6 9.3e+02 1.9 0.3 1 22 1201 1222 1201 1224 0.82 5 24 0.019 2 10.2 1.5 2 21 1234 1253 1233 1254 0.94 6 24 3.1 3.4e+02 3.2 0.2 3 23 1263 1284 1261 1284 0.89 7 24 0.025 2.7 9.9 1.0 2 23 1303 1325 1302 1325 0.97 8 24 0.00011 0.012 17.3 2.4 1 23 1331 1354 1331 1354 0.95 9 24 0.16 17 7.3 0.0 1 23 1378 1401 1378 1401 0.90 10 24 0.0032 0.34 12.7 1.7 1 23 1406 1428 1406 1428 0.97 11 24 0.013 1.4 10.8 0.2 1 23 1434 1457 1434 1457 0.95 12 24 0.003 0.32 12.8 1.3 1 23 1470 1492 1470 1492 0.97 13 24 0.00023 0.025 16.3 1.8 1 23 1543 1566 1543 1566 0.97 14 24 0.00045 0.049 15.3 3.0 1 23 1625 1648 1625 1648 0.96 15 24 0.0034 0.37 12.6 1.5 3 23 1674 1695 1672 1695 0.95 16 24 0.0049 0.53 12.1 0.1 2 23 1701 1723 1700 1723 0.94 17 24 0.013 1.4 10.8 0.2 1 21 1766 1786 1766 1787 0.95 18 24 0.0016 0.17 13.6 0.6 1 23 1797 1819 1797 1819 0.93 19 24 0.00014 0.015 16.9 0.4 2 23 1909 1931 1908 1931 0.93 20 24 4.3e-07 4.6e-05 24.9 1.4 3 23 1938 1958 1937 1958 0.98 21 24 0.0022 0.23 13.2 0.2 1 23 1975 1997 1975 1998 0.96 22 24 0.24 26 6.8 0.0 1 23 2020 2042 2020 2042 0.97 23 24 0.027 2.9 9.8 0.5 1 23 2048 2071 2048 2071 0.95 24 24 0.00033 0.035 15.8 0.4 1 23 2080 2103 2080 2103 0.96
Sequence Information
- Coding Sequence
- aTGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCCTCCTCGCCTCGAAAATAAAGGATTGTGTGTCCGTACAAATAACCGAAAATGACGTCCTACCATTGAATGTCTGCAGGAAATGTGTGAACAATGTTCATAACTGGCACATATTTAAGTCAGTTTGTGAGAGGACCCAAAACAAACTACTGTCTCTGATTGAAAAGGATGGCAGCCAACTAGAAGAGGTGAATATAAAAAGTGAACCCTTGTTTGATGAAGCTTATGATGATGGAGTTGTCATTGATGGGTCCTATCCATATTCAGAGAATGCCACTTCAAGTAAAGTGCAGCCGGAAGGCCCACCAATCTTGGCTTCGCTGGGGCTCACACCGAGGAGTGATAAGAAATATGTAGACCCTCGCATGGACTGGCAACGAGTCCATGCCATATTGGACATCATTCAAGATGACGAGGTCATTGATTCTCTGCAGTCAGCTGAAGAGTTGGATGTCCTACAGCATTCCGATCATGACTCTGACTCAGAAATTGAACTGACATCTGACGTTGAAGTTGATGATTTGGATACATCATCTGGCTACAAGCGTAGAAATGGTGAAACAATATCTAAAGATCCTCTCCTATCAGAAGCagaaatttacaaaaaaggAAAGTTGACATGTATGcaaaaacgaaaaagaaaatcgCAGCAAGTGTGTTACCCTGAACCTAAGAATGCATGGCAATTGTTATTCACTGATGAGTTGCTTGAAATTATTGTTTTGGCTACCAATGAgaaaataaagagaaaaaatgATTCCTCTGATCAAACTTATATTGACGAATTAAAAACCCTCATTGGGATATTATACATTCATGGCGTTATGAGACCCATTCATCAGAAATCACATGATTTATGGCATAGCGACTTAGGTGTTAGCTGCATCAAGAAAGCCATGAAATTCGGAAGATTCAAATTTCTTTTAGAAAACTTGTGTTTTTATGTAGATGAAGGAGATAAAAACAATTCTCAGTATGATGTTATGAAACGCATACGTAAAGTGTTTGATATGTTTGCTTCAAACTGCAGAGAAGCTTTTGAAATTGGAAGTCAGGCTGTGGTCGATGAGATGATTGTCCCGGTGTATGGACCATGTCCTTTCCGTTTTGAATTTGACAATAAGCCTAGTAAGAAACATGGAATCAAATTGGTTCTGTTGGTGGACCCAACAAATTTTTATATCAGTAATTTGGAGGTGGTAACTTTAAGCTCATGTCAACCTGAACAAATAACCTCAAAGCTGGCCCAGCACCTAGCTGGATCCCGTAAAACGATTGTGATGGACAGTTGGTTCAGTTCATTTCCCCTCATAACTAAACTAAAGAATGAGTATCAACTGTACAGTCTTGCTGCCCTGAATAGTAAACACGAGATGTTAATACCACCCCTTTTTGtttcaaaatacagaaaaagCGAATCTGTGCTGACTGGTTTCGTAGACGAAGATGTTGCACTCGCATCTTACGTCAACAAGGAGTATAAATCAGTGAATGTGTTGACAAATGAACCTATGTTATACAAGAAACAGCCACAGTTTAGATCAGGCACAGCGGTTTGGctgtacaaaaaaaactattctgCAGTGGAAGTAGTTGATGTGCTGATGCATTACTACACTACAATGCAAAACTGCAATGACTGGGCTCTGTCTCTTTTCTTCACAATGTTGAACATTGCCTCCATTAATGCTCAGGTCATATGGACTACACATAACTCTTCAGCAGTAAAGCAGAGGCGTATTTTTATTAGAGATCTGGCTGCAAATCTTTTAGGTGGAGATTATACAGCTGTGAATGTGAACAGTCCACAAACGCGAAAGAAGCTGAGAATATCCAATACGGGTGTGGAAAGTGACAAAGAAGAAGAGGAGGAATATGACGAAGAGATGAACGAGCAGGCCGCTAAGTCTTTCAAACAAGTGCCTAACATGCCCGAGGTGTCGATCACGGTGATGAGACTCGGCGGCGAGACGCTGCAGTCCCGACAAGGCATCCAGCAACTCGCCTCCAAGGATTGCCTCGTCTGCGGACGCACCTACCGCTACTCACACAACGCGCGCCGCCACGAGCTCACCTCACACGGTTTCGACAGGTACACCAACCAAGTTAACCCCCCCAAAAAGTCATCATCGTTCTCTCGTATGCAACCTAAACTTAGGCCCAACCCGTTCAATCCCAAAGCGCGACTCATGCCCAACCCCGTTAGCCACAAAATGAAATTAATGCCCAGGGCGACGCCACCAAAGGTAACGACAAAAGTGATAGCCCCACCGAAACCCATGCCTGTAAAAGCTAATAAAAACCAACACAATAATTTGCCTTATCCACTTCGTATAAAAGCGTTAAAAGACttgcaaattaaaaagaaagagccgcaaatccttaaaactttactGACAACGAAACCGGAAGTGTTAGTATCTGAACCTGAAATTATTAATTCCGCTCCAGAGAGTCCGGAGACTTTGATCTCTGAACCAGAAATCGCTTCATTCCAAGTTGAAACTATTTTATCTGAACCTGACGATCAAAATGGTGGAGATGAAATAGATGAACTGCATATAAGCCAGAATCAAGCAACGTATGACACTTTAGACATGGAGTCCGATAACGAAATAGAAATCGCTCGTCAAAAAGAAGAGGTTGACATAGACGAACATGATGTTGAAGAAAATGATGCAGACCACGACGCagaagaggaaatgcagcatgatGGCGAGGATAATGTTGAAGACAACGAAAATGAAAAGTATAATAATGAAGACGAAGGAGAGAATAGAGACGTCGATATGAACGAGGCTAAAACAGTTGATGAAAccaaacaagaagaagaagaagaaataaatgaaGAACAAGACCATGAAGAAAACGAAAACAATGAAGAAAATGAGGATGAAGATGATCTCCCGCCAGAGGGCTTGGCTCCTGTTGTCGAGATAAACGAAGATATGGCGACGAACTCATACAATAGTGAATTaaatgaagaagaagatgacaCACTTGATGAAACGGCCGATCCTAACGACACCGTTGATCCTGATGGCACGGTCGATCCTAATGACACTGTTGACCCCCTTGAGTCTGTTGACCCTAATGATACTGTAGATCCCAACGATACAGTCGATGATGACGCCGAACCAACGGAGTTAGACCCTAACAAACAATACGTGACAAAAGCCCAAAGAGATTTCATAGCTAAATACAGAGCCATCATACAGCAAATTAATACGAAACGATGTCTGTGTTGCGACAAAGAATATCCTCGCAGAAAGGCCGTTATACAACATCTGCAGAAAAATGGTCACAAAGTGCCTAAACATACTTGTTATAATTGTGTAATTACGTTTGGCCATATTGGCGCCTTGTTAAGTCACATGAGGTCTAACAGTTGTACGAATTTGTGGACAATTATCTACAACGACAATGGTATTACTGATGATATGGTCTTGGAGGATGAACCGAAGAAACCCCAGTACAAAGATATATTCAACGCAAGATCCTATGCTTGTAAATTGTGTCCAGCAAAGTTCCAGTTGAAACAGTTTATCATGAAGCATGTGTTAGATATACATGAAGATGGGCAATCTCTGGTACCTCTGCATTGCGTACACTGTGGACAGAGATTCAAAGAAAGAGTTTTGTGGAAGAAACATATCCGTAATGGAGACTGCACGGTATGTATTGCTTGCGATTTGTGTTCGGTGAAATTTCCCAACATTCACACTTTCAACGATCATGCTTTAGCTGAGCATGCGGGTAGTTCTGATCAGGGCAATGAGAGTAAATGCGTAGATGGACGCATGACTGAATGTCCAATTTGCAACAAGAAACACCCCACTTACCTCAATCTAGTGCGACACTTGAAGACCGTACATGGCGAAGATAAGCCGCATTACTGCAAACATTGCGATGAAAAATTCGAACAGTCTGCTGACCTCAATAAACACATTTATGTGGCTCATTCCACTGTTGGTCTGGAAAACTCAGGCCCTGATATGTCAATCGTTAAAGAAGAAGCGGAAGAATATCACTATTCCTGTACTGAATGTAATGCTATATTTGAAACTGTGGATGCATGGACTGACCATCAGGTGGCAGAGCATAATCAGATCGCGCATTACTGCGATCAGTGTGACAAAAAGTTCTTGCGGCCATCCGAGCTGGCTGAGCACAAGAACTCACATTTGCGAGTCAAGTTCTATCCTTGCAGCATTTGTTCTAACTCTTACAGTACACCTCAAAAACTTTCCGATCATGTACAGCAAGTGCACCCCGGCCTCGGATCCCAGGTTGCAGGAGAAACTGACTTTTTCTGTGATATCTGCATCAGGTCATTCAAAAGCCGACAAGCTTACTCCAATCATATGCGTATTCATGCTAAAGTGCCAACTACCAACAGACGACCTGGTGATCCTAAACTAGGCTTTGCTCCGCAAATTGTCGGAAAACCTATCAAACAGTTCAGCATCGCACAAGCtccaccaaatttggttttcaaACCCAACCCTAATGTTCCTAATGCTCCCTATTCTTGTGATATTTGTGGAAAAGGATTTATgcataagaaaaatatttggaaGCATAAGAAAGTGTTGCATGCTGATCTTCTTAACGACCGCAATGATAGTGAAGAGAATACAATGCATGCATCCACGGAAGAGGATGAATACAATATTGATGAGAACGGTGCGCTAACCACCCCACAGTTCAACAGTTTCAACTTCTCAAGCTTTACAAATAATGTACAAAACCAGCTTACTCAAGGTGAAGTATATACTTGCGACATCTGCTATCAACGATTTTCATTCAGAGACAGTTTGCGAAAGCACAAGCGTGCAAAACACGGAATCAAAACTCCAAGCACTACTGGAAGCGAAACACAGACTCAACCTGCAGAACCAGGAGGGGGTAGGTCTAACTGCACCATCTGTAAGATCACATTCGCGGACAAAAAGTCTTACTACCGCCACAGGAAGAATGTACACAAGAATACGACGCAGATGTGCAAAATATGTGGCAAGCCTTTGAACTCCACATCAGAACTGTACGAGCACTTGAAAGCGGCCCATGCTCGAGAGCTTTTGGGATACAATGCTAACCAAGGATCTAGCAAAACTCAAGAAGTCACACAAGAGTTAGACGAGTATGAAATCGAGCCAGAAGCTGCGGATCCGAGTGTAGACTACCAGGCTCGATACCCTTGCGATACTTGCGGAAAACAATTTGTCGGCTTGCTGGCGTTACAAAACCACCAATGCATAAATCAAATATCTTCACAACCGCAGACATTTGATTGTGAGATTTGCCACAAGAGCTACACGTCAATTGCTGCTCTGAAAAGCCACCGCGGGTGGCATCTACGTTCGCCAGACGGCAAAGCGGCGGCTAACAACAGCGGCCTCTGGATGCCGCAACACAAAGTAACGAGCAAAGTGAGCAAACACGAGGTCGTCGACCACGCCCCTGTAAGTCGCGCCGCACAATCTACTCCCACCGCATCTAAGAGAAGACTGCCACCAGAGGTAGAAGTGACAGTCGTCAATCCAAATAAAAAGTTACGATCGGACGATTCCGTCGAAATGGATCATCATAACAACTCTAACAGCGGTATTCCGGAGGACAAATACTGTACTATCTGCGACAAGGAATTCACAAAGCGCGCAGCGTACCAAAGGCACATGGATGAAGTCCACCAGCCGAATTCTGTATTCTGCCCGGTCTGTGACAAGAGCTTCACGCGAAAATCAACCTTACTCGTTCACATGAAGAAGCATTACGAAGGCGGAGAGGGTACCTCCACTTCCAACCAGGGGGAAGAGGACTACCCGTGCGATCTGTGCGGAGCTCAGTACGATAGCGCGCAGGCTTTGCGAGCTCACCGAATGAGGCACCACGGCGAGGAGTCGGACCGCGAGTCCGAGGACGAGGGCAGCATCGGTGCGGCCGCGCCCGGCGAGTTCACTTGCGCGCAGTGCGGCGACGGCGTGGCCACGCCGAGAGACCTCATCGCGCACCGCACCATGCACGCCACGCCAACCAAGTACTTCTGCAACATCTGCAAAGTCTACTTCGCTAGAGCACTGGACCTGTCCTCGCACACGCGCGCCAGACACGCCGACACTGAAAAGAGCGCCATGTTTCCCTGCGCGATGTGCGACCGCTTCTACATGAACAAGAAGAGTTTGCAGAGGCATATCGAGATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPLLASKIKDCVSVQITENDVLPLNVCRKCVNNVHNWHIFKSVCERTQNKLLSLIEKDGSQLEEVNIKSEPLFDEAYDDGVVIDGSYPYSENATSSKVQPEGPPILASLGLTPRSDKKYVDPRMDWQRVHAILDIIQDDEVIDSLQSAEELDVLQHSDHDSDSEIELTSDVEVDDLDTSSGYKRRNGETISKDPLLSEAEIYKKGKLTCMQKRKRKSQQVCYPEPKNAWQLLFTDELLEIIVLATNEKIKRKNDSSDQTYIDELKTLIGILYIHGVMRPIHQKSHDLWHSDLGVSCIKKAMKFGRFKFLLENLCFYVDEGDKNNSQYDVMKRIRKVFDMFASNCREAFEIGSQAVVDEMIVPVYGPCPFRFEFDNKPSKKHGIKLVLLVDPTNFYISNLEVVTLSSCQPEQITSKLAQHLAGSRKTIVMDSWFSSFPLITKLKNEYQLYSLAALNSKHEMLIPPLFVSKYRKSESVLTGFVDEDVALASYVNKEYKSVNVLTNEPMLYKKQPQFRSGTAVWLYKKNYSAVEVVDVLMHYYTTMQNCNDWALSLFFTMLNIASINAQVIWTTHNSSAVKQRRIFIRDLAANLLGGDYTAVNVNSPQTRKKLRISNTGVESDKEEEEEYDEEMNEQAAKSFKQVPNMPEVSITVMRLGGETLQSRQGIQQLASKDCLVCGRTYRYSHNARRHELTSHGFDRYTNQVNPPKKSSSFSRMQPKLRPNPFNPKARLMPNPVSHKMKLMPRATPPKVTTKVIAPPKPMPVKANKNQHNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSAPESPETLISEPEIASFQVETILSEPDDQNGGDEIDELHISQNQATYDTLDMESDNEIEIARQKEEVDIDEHDVEENDADHDAEEEMQHDGEDNVEDNENEKYNNEDEGENRDVDMNEAKTVDETKQEEEEEINEEQDHEENENNEENEDEDDLPPEGLAPVVEINEDMATNSYNSELNEEEDDTLDETADPNDTVDPDGTVDPNDTVDPLESVDPNDTVDPNDTVDDDAEPTELDPNKQYVTKAQRDFIAKYRAIIQQINTKRCLCCDKEYPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWTIIYNDNGITDDMVLEDEPKKPQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDIHEDGQSLVPLHCVHCGQRFKERVLWKKHIRNGDCTVCIACDLCSVKFPNIHTFNDHALAEHAGSSDQGNESKCVDGRMTECPICNKKHPTYLNLVRHLKTVHGEDKPHYCKHCDEKFEQSADLNKHIYVAHSTVGLENSGPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHYCDQCDKKFLRPSELAEHKNSHLRVKFYPCSICSNSYSTPQKLSDHVQQVHPGLGSQVAGETDFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRRPGDPKLGFAPQIVGKPIKQFSIAQAPPNLVFKPNPNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMHASTEEDEYNIDENGALTTPQFNSFNFSSFTNNVQNQLTQGEVYTCDICYQRFSFRDSLRKHKRAKHGIKTPSTTGSETQTQPAEPGGGRSNCTICKITFADKKSYYRHRKNVHKNTTQMCKICGKPLNSTSELYEHLKAAHARELLGYNANQGSSKTQEVTQELDEYEIEPEAADPSVDYQARYPCDTCGKQFVGLLALQNHQCINQISSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDHAPVSRAAQSTPTASKRRLPPEVEVTVVNPNKKLRSDDSVEMDHHNNSNSGIPEDKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGTSTSNQGEEDYPCDLCGAQYDSAQALRAHRMRHHGEESDRESEDEGSIGAAAPGEFTCAQCGDGVATPRDLIAHRTMHATPTKYFCNICKVYFARALDLSSHTRARHADTEKSAMFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -