Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463324.1:5210213-5220714[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 37 0.0086 0.93 11.3 4.0 1 22 98 119 98 119 0.97

2 37 1.2 1.3e+02 4.5 1.0 2 23 147 168 147 168 0.97

3 37 0.03 3.3 9.6 0.4 2 23 191 212 190 212 0.97

4 37 0.11 12 7.8 0.8 2 23 217 238 216 238 0.91

5 37 0.0031 0.33 12.7 0.1 1 23 243 266 243 266 0.92

6 37 0.27 29 6.6 4.7 1 23 272 295 272 295 0.95

7 37 0.0047 0.51 12.1 3.9 1 23 302 325 302 325 0.97

8 37 1.8e-05 0.002 19.7 2.6 1 23 333 355 333 355 0.97

9 37 6.2e-06 0.00068 21.2 1.7 1 23 361 383 361 383 0.98

10 37 0.35 38 6.2 1.1 1 23 479 502 479 502 0.95

11 37 0.12 13 7.7 0.1 2 23 529 551 528 551 0.94

12 37 0.0055 0.6 11.9 1.8 1 23 573 595 573 595 0.98

13 37 0.00012 0.013 17.1 2.2 1 23 599 621 599 621 0.97

14 37 3.1 3.4e+02 3.2 0.0 1 23 626 649 626 649 0.93

15 37 0.0092 1 11.2 0.4 1 21 655 675 655 678 0.90

16 37 0.0028 0.3 12.8 0.9 1 23 685 708 685 708 0.98

17 37 5.3 5.8e+02 2.5 0.9 1 23 833 855 833 855 0.95

18 37 0.096 10 8.0 0.6 3 23 879 900 877 900 0.93

19 37 0.0015 0.17 13.7 2.3 1 23 924 946 924 946 0.98

20 37 2.6e-05 0.0028 19.2 4.6 2 23 951 972 950 972 0.96

21 37 0.76 82 5.2 0.1 2 23 978 1000 977 1000 0.89

22 37 0.017 1.9 10.4 0.9 1 23 1006 1029 1006 1029 0.96

23 37 0.79 86 5.1 0.7 1 23 1138 1160 1138 1160 0.97

24 37 0.081 8.8 8.2 0.8 2 23 1183 1205 1182 1205 0.93

25 37 0.00038 0.041 15.6 1.5 1 23 1229 1251 1229 1251 0.98

26 37 0.00026 0.028 16.1 3.2 1 23 1255 1277 1255 1277 0.97

27 37 0.042 4.6 9.1 0.1 2 23 1283 1305 1282 1305 0.94

28 37 0.0017 0.18 13.5 1.3 1 23 1311 1334 1311 1334 0.96

29 37 0.0086 0.94 11.3 0.1 1 23 1394 1416 1394 1416 0.97

30 37 0.71 77 5.3 0.2 2 23 1439 1461 1438 1461 0.95

31 37 0.00073 0.08 14.7 0.2 2 23 1510 1531 1510 1531 0.97

32 37 0.029 3.1 9.6 3.2 1 23 1537 1560 1537 1560 0.92

33 37 2.4 2.6e+02 3.6 0.2 1 20 1566 1585 1566 1589 0.75

34 37 0.15 16 7.4 0.6 1 23 1595 1618 1595 1618 0.97

35 37 0.062 6.7 8.6 2.2 1 23 1624 1646 1624 1646 0.96

36 37 2.2e-05 0.0024 19.5 2.0 1 23 1652 1674 1652 1674 0.98

37 37 0.026 2.8 9.8 9.5 1 23 1680 1702 1680 1703 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	37	0.0086	0.93	11.3	4.0	1	22	98	119	98	119	0.97
2	37	1.2	1.3e+02	4.5	1.0	2	23	147	168	147	168	0.97
3	37	0.03	3.3	9.6	0.4	2	23	191	212	190	212	0.97
4	37	0.11	12	7.8	0.8	2	23	217	238	216	238	0.91
5	37	0.0031	0.33	12.7	0.1	1	23	243	266	243	266	0.92
6	37	0.27	29	6.6	4.7	1	23	272	295	272	295	0.95
7	37	0.0047	0.51	12.1	3.9	1	23	302	325	302	325	0.97
8	37	1.8e-05	0.002	19.7	2.6	1	23	333	355	333	355	0.97
9	37	6.2e-06	0.00068	21.2	1.7	1	23	361	383	361	383	0.98
10	37	0.35	38	6.2	1.1	1	23	479	502	479	502	0.95
11	37	0.12	13	7.7	0.1	2	23	529	551	528	551	0.94
12	37	0.0055	0.6	11.9	1.8	1	23	573	595	573	595	0.98
13	37	0.00012	0.013	17.1	2.2	1	23	599	621	599	621	0.97
14	37	3.1	3.4e+02	3.2	0.0	1	23	626	649	626	649	0.93
15	37	0.0092	1	11.2	0.4	1	21	655	675	655	678	0.90
16	37	0.0028	0.3	12.8	0.9	1	23	685	708	685	708	0.98
17	37	5.3	5.8e+02	2.5	0.9	1	23	833	855	833	855	0.95
18	37	0.096	10	8.0	0.6	3	23	879	900	877	900	0.93
19	37	0.0015	0.17	13.7	2.3	1	23	924	946	924	946	0.98
20	37	2.6e-05	0.0028	19.2	4.6	2	23	951	972	950	972	0.96
21	37	0.76	82	5.2	0.1	2	23	978	1000	977	1000	0.89
22	37	0.017	1.9	10.4	0.9	1	23	1006	1029	1006	1029	0.96
23	37	0.79	86	5.1	0.7	1	23	1138	1160	1138	1160	0.97
24	37	0.081	8.8	8.2	0.8	2	23	1183	1205	1182	1205	0.93
25	37	0.00038	0.041	15.6	1.5	1	23	1229	1251	1229	1251	0.98
26	37	0.00026	0.028	16.1	3.2	1	23	1255	1277	1255	1277	0.97
27	37	0.042	4.6	9.1	0.1	2	23	1283	1305	1282	1305	0.94
28	37	0.0017	0.18	13.5	1.3	1	23	1311	1334	1311	1334	0.96
29	37	0.0086	0.94	11.3	0.1	1	23	1394	1416	1394	1416	0.97
30	37	0.71	77	5.3	0.2	2	23	1439	1461	1438	1461	0.95
31	37	0.00073	0.08	14.7	0.2	2	23	1510	1531	1510	1531	0.97
32	37	0.029	3.1	9.6	3.2	1	23	1537	1560	1537	1560	0.92
33	37	2.4	2.6e+02	3.6	0.2	1	20	1566	1585	1566	1589	0.75
34	37	0.15	16	7.4	0.6	1	23	1595	1618	1595	1618	0.97
35	37	0.062	6.7	8.6	2.2	1	23	1624	1646	1624	1646	0.96
36	37	2.2e-05	0.0024	19.5	2.0	1	23	1652	1674	1652	1674	0.98
37	37	0.026	2.8	9.8	9.5	1	23	1680	1702	1680	1703	0.96

Sequence Information

Coding Sequence: ATGCGTAACTTAGCTAAGAATACAGGAGTGCAAACATGGCCCAGTCGCAGACGGATAATTACTGACGTAACAAgATTATGCGGACAGAGAGAAAATGAGAGTCTTCCAATAAAGCAGAATTATTCTGACGAAGACTCTATTGAAGAAGTAGTTGAGAAAACTGTAACCAAAGCAAAGTATCAACGGCACCCACGCAGCGCAAAATCAGAAGCGAGATATAACACTAAGCAAAACGCAAAAGCACTTCTAGACTGCTGGGACATTTGCCCATTCCGCTGGAAACAAAACAAGTTTCAATGTGCATACTGTGAAAAACACTTTACTGAATGCAACCTTATGCGAAAGCACATTAGGACTTGTTCCTCCCAACACGCCATCTCAGACATCTATAAAAAGTTTAAAGAAATGGCCATAATCAATGTTGATCTAACAGATGCAACTTGCAAGTTTTGCACCGTCGCCCTGAAAGATGTCAATCAGATGAGGACTCACATTAAACAACACGGGTTCCACTTAAACTCCAATCACCCTGACGGGGTACTGCCGTTTTTCCTCGACAAAGATTCTTGGACTTGCGTTATATGCGAACAGAAGTTCAACAACTTCTTAAAACTCTACGAGCATATGAATATTCATTACCAACATTGCATCTGCGCGATATGCGGCAAGGGATTCATGACTGGGACGAGACTGAGAAGGCATTCTGAATTGCACATTTCTGGAGCGTTTCCTTGCAAAGAATGTGGCCAGGTGTTTTCCAAGCGAGCCGCAAGAGAGGCGCACACGGCTAATACACACGCGAAAGGACCGAGATATAAATGTCCGCATTGTGATGTTCGGTTTCACGTCTACTATGATAGAATGCACCATCTAAACGAGGCGcataaagaaaaagaagttgtATACGATTGCTCACACTGCGAATTGTCTTTCAAGACCAGTGGGAAACGCTCCAAACATATTCGCAGCAAACACTTCCCGCAACAACAGAGGAGTTTTGAGTGCAGCCTTTGCGAGTGGACGTTCAGAGACAGTTATCATCTTAAAAGACATTTAGTGAAACATACAGGTGATAAAAAATTTAATTGTACAATGTGTGATAAGTCGTATCCAAGAAATAATGCATTGAAGTCACACATGAAGAAACACCAATTTGAAGATATGAAGAGAACGCATGTCAGATCTAATTTAACGGATTCAGTAAAACTGTTGCCTGCTATGCCGAgttCCGAAATAGCGAAAACGGAGCTAATCGTTAGACGTAGAAAATTAAAGGAAGTCGTAGGCGAACGACAAATGCGACGGCGTCGTCGCGCAAACAACCAACTGCCGGAAGAATCGGACAGCCGTATCTCGAAAACGATGATGCGGCGAAACGCCATCACGATTCTGGAAAATTCTACCGCGTTCGCTTTCAGATGGCTTCATAGCGTCTTCTACTGCTCATACTGTCAGGAGAAGTACGTCGATGTCACACCGTTTAGGGAACATGTAAAACAGAGACACTTGAACGAAACCCCAACTAAAACAATTTTCGCTAAATTGACTGAGAATAATATGGTAAAAGTTGACATAGGTGATCTCAGATGTCGCATCTGTGATCTAGTTTTAAATGATATCGATAGTCTCAAAGAACATTTAGTTAGAGGACATCAAAAAACATTACATTCAGAATACAACGACGGAGTTCTACCTTTTAAACTGTCGGAAGATGGATTTTACTGTCAAAATTGCTTTGAGCTTTTCACTAGTTTTGCGAAACTGAACGAACACATGAATACTCATTATAAAAATCACGTGTGCGATTTGTGTGGCAAATCGTTCGTCTCTAAATCGAGATTCAGGATGCATGTGCAGTCTCATGAAACTGGAACTTTCCCTTGCGGACTGTGTGACGAAGTACTTGAAACCAGAGCGTCGAGACTAGGTCACAGGATGAAGATTCATCGAAAAGGCGTCAGGTATACCTGCCCTAGATGTCCTGAAGTATTCACTACGTATTACGCAAGATCTAAACATTTAGTCGATAATCATGCAGAGGCTAAGAAGGAATATGAATGTGCGACTTGTAGGAAAACTTTTGAAACAACCAGCAAAAGAGCAGCTCATATAAGATCGACTCATAAACCTGTTGATCAAAAGCACGAATGTCATCATTGCATCCTCGACCAAGAGCAAGAATCATCAAATCAAGTGttagaattaaaaaaaggaGCTGATCCTGAAATTGAACGAGCCTCGAAGGAGGCGTCAGTACCAAAAGTAACCTGGAAGAGGAGGGAAAAATGTAAACTCGTTTTAGGCAAAACAAAAGTTCAATTAAAATCATCCGAAAAGTCACACATGGTTATAAACGATAAAACTACAGTAGAGTCGTCAGGGTCACACCTGAGCATTGTTTTGAAGAAAGATATCAAAACAATAGCTAATCAAGAGTATGCCGCTTTTATTCTAGAACATTCCAATGCAATACCATTTAGGAATTACCGTGGAAAGTTCATGTGTGCGTATTGCGATTTCTTATGTCCAGCGATTGTACAGCTCCGTACCCACTCCAACACGCACGAGAAATTGACTAACCTTTTCAAAAGGACCACCAAATTTCCCCTTAGAATCGAAATAACAGACCTCGCATGCAATGTTTGCAACTTGAGGGTAAACAGCATAGACAACTTGAAGTCTCACTTGGAGCACAATCATTCCAAGAAACCCCCATCGAAAGATGACGTAAATGGAGGCATCGCACCTTTTATTTTAACTCAAAACGAATTCAAATGCGTTCACTGTGACGAAACATTTGTCTCCTTTGGATATTTGCTTTTGCACACAAACAAGCATTACCAAAACTGTGTTTGCCACGTATGCGGGAAAGGGTTCAGGACAAATCGGAATCTGAAACAGCATAAGATGGTACATGACGAAACGAGCTGTGAATGTTCTAAATGCGGCTTGGTGTTGCCCACAAGGGCTGCTCGAATACAGCATATCGCCGCCGTCCACGGCCCGAAGTACAGATACAAGTGTCCCATGTGTGACGCCGCATTCATCTCGTACCACATGAGATTGAAGCATTTGGATAAAGAGCATGgctTCCTCGTCCAAGAACAAGGATCATCAAATCAAGTATTAGTCTTAAAAGAAGAAGCTGATCCTGGACTTGGACAATCCTCCAAGGAGGCACCAATAATAAAAGTCACCTGGAAGAGAAAGAATAGACTGCTACTAGATAAAAAAAGCGAAGGGAAATCATCCAAAAAAACACCCATTGTTCTAAAGAAAGAGACATTACCAGAGAAACAAGACAGAGATATCAgttggaaaaaaaaatgtaaagctGGAGCTAATCAAGCGAATGCCGCTTTCATTCTAGAAAATTCCAACGCTATACCGTTTAAATATAACCGAGGGAAGTTCATGTGCGCATATTGCAATTTCATTTGTCCAGCCATGGGACAGCTGCGTATCCATTCTAACACACATGAGAAACTGACTAACCTTTTCAAAAGAGGCATTCTATTCCCCCTTAGAATAGAGATAACAGATCTCACTTGTAATCTTTGTAATTTGCGAGTTAACAGCATAGACAACTTAAAATCACACCTAGAGCACGACCATTCCAAGAAACCCCCAGCTGTTGAAGACGAAGATGGAAGCATAGTACCTTTCATTCTAACTAAAAACGAGTACAAATGCGTCCACTGCGGGGAATCGTTTATAACATTCATGAATTTGCTCCTACACACAAACCTGCATTACCAGAACCACGTCTGCCATGTCTGTGGCAAAGGTTTCGCGAACGACCAGAAGCTTAAACGCCATAAGATGATGCATGACGATGAAAACTGTGAATGTCCTAAATGTGATGAGGTGTTGCCCACAAGAGCGGCTCGGATGAGGCACATTGCCGTTGTTCACGGCCCGAAGAATAGATACAGGTGTCCTATATGCGACGCCACCTTTAGCTCATATCATATGAGATTAAGACATCTGGACAGAGAGCATGGGCAGAAGTCTGAGTACCCTTGCGGACAGTGTTCAGCGGTATTTGCGACCGgGACGGTGTTTCTAAATGGTGTAAAATGGAAACCGAGCCGCAAGTACTTACTAGACCAAAGGGGTAACGCGGCTATAATTATAGAATACTCTAACGTATGTCCCTTCCGTTGGAGTAGGGGCATGTTCATATGCGGGTATTGCGCAGAAACTTTCGGGGACTTCGATGACCTAAGAGTTCACACAGAAAGCCACCCCAATAAAATCGAAACCATGCGATTTGTCAAAGATCAGCAGGTCAAAGTTGAAGTCTCCAATATGCGTTGCGAGATATGCCTACAATCTATAAACGACTTGGACACTTTTAAAGAACATTTAAGTTCTGTACACAATAAGGTATTCCGAGAGGAGCATCCGCTAGGCGTCGCCCCGTTTAGACTTGCCAATCAGAAATTTGGTTGCGCGCTTTGTGACACATTTTTCGAAAAGTTCTTCAAATTGAACTGTCATATGAACGAACACTTTCCGCATAACGTCTGCTTCCAATGCGGCAAATCTTTTGCAGCTGCTTCCAGGTTGAAGTCACATCTAGCTACTCATGAAATCAACCAACAATTCAAATGTCATAAATGCCCTGAAACATTTACTActagaattaaaaagaattaccaCGTAGCTAAGGTTCACGGGTCCGAATTAAGATACAAGTGTCCCATttgtaaaattaacttaaaaagtTACGAGATTAGGATAAAGCATATGGACGAAGCTCATAACAGGAAGGTGGAGTATCCTTGCCATCTGTGTCCAGCTGTGTTCCCAATGTACAACCGGAGAAATAAGCATATTAAAATGGTtcatacaaaaaacaaacagcATTCTTGTGAATTGTGCCTTTACCAATGTGTCACAGCAGCCCAACTAAGAAACCATATGGTCAGACATGAAGGCGAACGTAACTTTGAATGTACGATCTGTAAAAAGTGCTTCCCGAGGGCCAAAGCTTTGAAAGAACACTCACGCATACATAACAACGATAGAAGATTTTCCTGTGAATACTGTACATATTCGTGCATACAGAAATGTAGTTTGAAAAGCcatttgaaaactcatcatcaacgCCTGGTAGAAGATGCATAG
Protein Sequence: MRNLAKNTGVQTWPSRRRIITDVTRLCGQRENESLPIKQNYSDEDSIEEVVEKTVTKAKYQRHPRSAKSEARYNTKQNAKALLDCWDICPFRWKQNKFQCAYCEKHFTECNLMRKHIRTCSSQHAISDIYKKFKEMAIINVDLTDATCKFCTVALKDVNQMRTHIKQHGFHLNSNHPDGVLPFFLDKDSWTCVICEQKFNNFLKLYEHMNIHYQHCICAICGKGFMTGTRLRRHSELHISGAFPCKECGQVFSKRAAREAHTANTHAKGPRYKCPHCDVRFHVYYDRMHHLNEAHKEKEVVYDCSHCELSFKTSGKRSKHIRSKHFPQQQRSFECSLCEWTFRDSYHLKRHLVKHTGDKKFNCTMCDKSYPRNNALKSHMKKHQFEDMKRTHVRSNLTDSVKLLPAMPSSEIAKTELIVRRRKLKEVVGERQMRRRRRANNQLPEESDSRISKTMMRRNAITILENSTAFAFRWLHSVFYCSYCQEKYVDVTPFREHVKQRHLNETPTKTIFAKLTENNMVKVDIGDLRCRICDLVLNDIDSLKEHLVRGHQKTLHSEYNDGVLPFKLSEDGFYCQNCFELFTSFAKLNEHMNTHYKNHVCDLCGKSFVSKSRFRMHVQSHETGTFPCGLCDEVLETRASRLGHRMKIHRKGVRYTCPRCPEVFTTYYARSKHLVDNHAEAKKEYECATCRKTFETTSKRAAHIRSTHKPVDQKHECHHCILDQEQESSNQVLELKKGADPEIERASKEASVPKVTWKRREKCKLVLGKTKVQLKSSEKSHMVINDKTTVESSGSHLSIVLKKDIKTIANQEYAAFILEHSNAIPFRNYRGKFMCAYCDFLCPAIVQLRTHSNTHEKLTNLFKRTTKFPLRIEITDLACNVCNLRVNSIDNLKSHLEHNHSKKPPSKDDVNGGIAPFILTQNEFKCVHCDETFVSFGYLLLHTNKHYQNCVCHVCGKGFRTNRNLKQHKMVHDETSCECSKCGLVLPTRAARIQHIAAVHGPKYRYKCPMCDAAFISYHMRLKHLDKEHGFLVQEQGSSNQVLVLKEEADPGLGQSSKEAPIIKVTWKRKNRLLLDKKSEGKSSKKTPIVLKKETLPEKQDRDISWKKKCKAGANQANAAFILENSNAIPFKYNRGKFMCAYCNFICPAMGQLRIHSNTHEKLTNLFKRGILFPLRIEITDLTCNLCNLRVNSIDNLKSHLEHDHSKKPPAVEDEDGSIVPFILTKNEYKCVHCGESFITFMNLLLHTNLHYQNHVCHVCGKGFANDQKLKRHKMMHDDENCECPKCDEVLPTRAARMRHIAVVHGPKNRYRCPICDATFSSYHMRLRHLDREHGQKSEYPCGQCSAVFATGTVFLNGVKWKPSRKYLLDQRGNAAIIIEYSNVCPFRWSRGMFICGYCAETFGDFDDLRVHTESHPNKIETMRFVKDQQVKVEVSNMRCEICLQSINDLDTFKEHLSSVHNKVFREEHPLGVAPFRLANQKFGCALCDTFFEKFFKLNCHMNEHFPHNVCFQCGKSFAAASRLKSHLATHEINQQFKCHKCPETFTTRIKKNYHVAKVHGSELRYKCPICKINLKSYEIRIKHMDEAHNRKVEYPCHLCPAVFPMYNRRNKHIKMVHTKNKQHSCELCLYQCVTAAQLRNHMVRHEGERNFECTICKKCFPRAKALKEHSRIHNNDRRFSCEYCTYSCIQKCSLKSHLKTHHQRLVEDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -