Scos038953.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463324.1:3904325-3911535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0065 0.71 11.7 1.8 1 23 9 31 9 31 0.93 2 24 0.16 17 7.3 0.0 2 23 59 81 58 81 0.94 3 24 0.085 9.2 8.2 1.0 2 23 102 124 101 124 0.92 4 24 0.00026 0.029 16.1 0.2 1 23 129 152 129 152 0.97 5 24 2.9e-05 0.0032 19.1 1.0 1 23 157 180 157 180 0.97 6 24 0.0017 0.19 13.5 1.7 2 23 183 205 183 205 0.91 7 24 0.26 28 6.7 1.6 2 21 215 234 215 235 0.94 8 24 0.0027 0.29 12.9 0.7 1 23 292 315 292 315 0.96 9 24 0.15 16 7.4 0.1 2 23 343 365 342 365 0.95 10 24 0.063 6.9 8.6 0.2 2 23 388 410 387 410 0.95 11 24 2.9e-05 0.0031 19.1 0.8 3 23 417 438 416 438 0.94 12 24 0.017 1.8 10.4 3.4 2 23 443 464 442 465 0.94 13 24 0.00063 0.068 14.9 2.4 1 23 470 493 470 493 0.97 14 24 3.1e-05 0.0034 19.0 4.2 1 23 497 520 497 520 0.97 15 24 0.00023 0.025 16.2 0.3 2 23 527 548 526 548 0.96 16 24 0.086 9.4 8.1 0.0 3 23 655 676 653 676 0.95 17 24 0.011 1.2 10.9 0.8 2 23 697 719 696 719 0.96 18 24 0.0068 0.74 11.6 3.1 1 23 724 747 724 747 0.96 19 24 0.26 28 6.7 0.3 1 23 752 775 752 775 0.92 20 24 0.0034 0.37 12.6 1.1 2 23 781 803 780 803 0.92 21 24 0.001 0.11 14.2 0.2 2 23 811 833 810 833 0.97 22 24 0.0021 0.23 13.2 0.1 2 23 840 861 839 861 0.97 23 24 2.4e-06 0.00026 22.5 1.0 1 23 867 889 867 889 0.93 24 24 4.9e-06 0.00054 21.5 1.0 1 23 895 918 895 918 0.97
Sequence Information
- Coding Sequence
- ATGCCCTTCAAATGGAAGGGCAAACACATATGTTTCTATTGCGGCGAAACTTTCGCTGAGTACCCGCATTTAAAAGAACACACAACAGCCCACGGGCCGTGCACGACCAAAGATTACTCCCTAAAAATCATTAAAGGGAATcacattgaaattaaaatagacGTTTCCGATATAAGCTGCAAAATCTGCAGTGAGCCTTTCCCTAAACTCGATGAGATCGTCGATCATTTGATCGTCAAACATAACTTGGAATACGACAAGTCTATTGACACTCCTCTTCTAGAATACAGACTTGCCGACTGCCGATGCCTTTACTGTGATCAGCAGTTCGCTTACTTCGGCAAGTTAGTATCCCATGTCAACGCAGATCATCCGCAAAACTGCTTCATTTGCAACGAATGCGGCGCCACGTACAACAAGAAGAGGGATTTGGGCGAGCATATACGTAGTAACCATAGAGAAGGAGGGTATACATGCAAACAATGCGCAAAAGTGTTCGAAACGAAGGGTTTGTTgataaaacatcaaaataacTACCACTTTCGCAGGTGTAAGCACTGCAGTGCTTCGTTTTCTTCTAAACTGCTGCTGCAGAAACATATTGGCTTAGAACATCCTAACGAAGGAACAGACGAAAGTCGTCAATGTAAATACTGCTTAAAAGAGGTCCACACCAAACAAGGATTGAAACAGCATTTGAACAAATGTAAAGTCAAAATGCTCGCTGAGGCGTTACAACCGCAAGATAATACCGACACGAGCCATGACGTTAACATCGAACCGAGGAGACGACAAAACGTTGCAGTTATACGACATAACATTGTCAGCGTTCTCAATATGTCGACGGCGGTACCCTTCCGGTACTTCACCGCATATGTCTGCTTCTATTGCACGAGAAAATACGTAGACTTCGAAGAACTAAGGAGTCACACTCTTATCGAACACCCGGTCTGCGATTTGAAATCCAAATGCATTAAAAAAGTCAAAGGCGAACGAACTACCGTCAAAATAGACGTTTCCTGTCTATCCTGCAAAGTTTGCTCTCGATCTGCACAGGATTTAGACGAACTCCTAGACCATATCACGCGCGATCACAACGTGAAATACGATAGAAACGTTTCAGGTTGCTTCGAGCCATTCAAAATTGTAAAAGACAACATTCCTTGCTTAAAATGCCCCCAAACCTTCCGTTACTTCGGAATACTATTGCGACATATTAATTCGACTCATTCCGGAAATAAAGGCATATGTGACTTCTGCGGACGGAGTTTTAAGAACCTCGCCAATTTGAAAGTGCATATTTCTCACGCGCACACTGATTCCATAGAATGCGACGTTTGTTCGGCGAAATTCCGAAACCAGTGGTGTTTATCTAGACATAAGGCGAAACACCACGACGCGAAAGACTTCAAATGCCCGAAGTGTCCGGAGAAATTCCAGTCACAATACCAGAAACAAAAGCATCTGATCAAAACACACGGGGAAGGCCACAAATGCGTTTATTGCGGCCGTATGTTTACTAGGAATTCCTTCATGAAAGATCACATCAGGCGCACTCATCTTAAAGAGAAAAATGTTCCATGTTCGGTGTGCAACGAAAAGTTCTTCGACAATTACCTGTTGAGAATGCACATGGCTAAACACGAGGGCGATCGGAAGTTTGTTTGTACAAAACTGTTATCTGACGAAGACAGATCTAAGAGACTGGAAGCCATTGCGAAACTGCAAATAAAGCGAAGGAATATCGAGTACATCCTACAATACAGCAATGTCACGCCCTTCCTCTGGTATAAAGGGAAGTTCAGATGTTACTTCTGCACAGAAACCATGGACCACGACGCTCTTAGAGATCATACGGCCAAAGTACACCAATTTGCCAATGTAGAACTGGTGGTCCATGATAGAACGAAAAATAATCGCAGTAAAGACGCAGCTGTCAAGGTGGATGTCTCGCAAATCGCTTGCAAACTCTGTCCGGCTACCATAGCGAATCTAGACCAGCTTATACACCATCTGATCATAAGCCATGACGCGGAGTATGACATGAGCATACCAAATTGCTTGCTGCCGTTCAAATTGGACGACATGACGTGCCCGACTTGTAACTTGAAGTTTGTTTTCTTCGAATACCTTCTCAGACACGCTAATAAACAGCATCTGTCTCACGAGTACTTCTGTCACGTCTGCGGAGCGAGTTTCCAAGGCGATAACCACTTGAGGATGCATATCAGATACTACCATAGGGAGGGAGGGTATTCTTGTGATCAATGCGGAGTTACTCTGTCAACTCTATCGAAGAAACTCTTGCACGAAAAGAACGTTCACATGGTGAACTTATCCACGTGTCCTCACTGTCCAGAAACGTTCAAAAGTCGCTACTTGAAGAACCTGCATCTAGCCAATGTCCATGGAATAGAGGAGCTCAAAATCCGCTGCCCGTTCTGCCCCAAAATATTCCCGCAAGAGAGCATAATGTCACGGCACATGCGTCGAGTCCACCTGAAGGAGAAGAACGTGGAATGCGAGGTCTGCCGCGAGAAGTTCTTCGGCCCCTACGACCTGAAACTGCACATGGCAAAACACAATGGCGAAAAGAACTTCGTGTGTTCCGTTTGCGGGAAAAAGTTCTCCAAAAAGTCCAACCTGAACACGCATTCAGTTATACACACTGGGGAGAAAAACTACTCGTGCTTGATCTGCCAGAAGCCGTTTGTCCACGCGGCTAACCTCAAACTGCATATGAGGAACAGGCATCAGCCGGAGGAGCCTGCCTCCAGCGAGGCGCTGGCCATCATGGACCATGTCGAGGGCACCGAGATACAGATGGAGTTGTGCGGAGATCAGCTGGACACAGCCCAGCTCACTCACACATATGTGCATTGA
- Protein Sequence
- MPFKWKGKHICFYCGETFAEYPHLKEHTTAHGPCTTKDYSLKIIKGNHIEIKIDVSDISCKICSEPFPKLDEIVDHLIVKHNLEYDKSIDTPLLEYRLADCRCLYCDQQFAYFGKLVSHVNADHPQNCFICNECGATYNKKRDLGEHIRSNHREGGYTCKQCAKVFETKGLLIKHQNNYHFRRCKHCSASFSSKLLLQKHIGLEHPNEGTDESRQCKYCLKEVHTKQGLKQHLNKCKVKMLAEALQPQDNTDTSHDVNIEPRRRQNVAVIRHNIVSVLNMSTAVPFRYFTAYVCFYCTRKYVDFEELRSHTLIEHPVCDLKSKCIKKVKGERTTVKIDVSCLSCKVCSRSAQDLDELLDHITRDHNVKYDRNVSGCFEPFKIVKDNIPCLKCPQTFRYFGILLRHINSTHSGNKGICDFCGRSFKNLANLKVHISHAHTDSIECDVCSAKFRNQWCLSRHKAKHHDAKDFKCPKCPEKFQSQYQKQKHLIKTHGEGHKCVYCGRMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMAKHEGDRKFVCTKLLSDEDRSKRLEAIAKLQIKRRNIEYILQYSNVTPFLWYKGKFRCYFCTETMDHDALRDHTAKVHQFANVELVVHDRTKNNRSKDAAVKVDVSQIACKLCPATIANLDQLIHHLIISHDAEYDMSIPNCLLPFKLDDMTCPTCNLKFVFFEYLLRHANKQHLSHEYFCHVCGASFQGDNHLRMHIRYYHREGGYSCDQCGVTLSTLSKKLLHEKNVHMVNLSTCPHCPETFKSRYLKNLHLANVHGIEELKIRCPFCPKIFPQESIMSRHMRRVHLKEKNVECEVCREKFFGPYDLKLHMAKHNGEKNFVCSVCGKKFSKKSNLNTHSVIHTGEKNYSCLICQKPFVHAANLKLHMRNRHQPEEPASSEALAIMDHVEGTEIQMELCGDQLDTAQLTHTYVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -