Scos003120.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463295.1:36370870-36395380[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 47 0.021 2.3 10.1 6.1 1 23 264 286 264 286 0.98 2 47 0.0003 0.033 15.9 1.9 1 23 292 314 292 314 0.98 3 47 0.0001 0.011 17.4 1.8 1 23 320 343 320 343 0.96 4 47 0.65 70 5.4 3.9 1 21 349 369 349 371 0.94 5 47 0.00043 0.046 15.4 2.7 1 23 377 399 377 399 0.99 6 47 2.7e-05 0.003 19.2 2.8 1 23 405 427 405 427 0.98 7 47 2.7e-05 0.003 19.2 2.8 1 23 438 460 438 460 0.98 8 47 2.7e-05 0.003 19.2 2.8 1 23 471 493 471 493 0.98 9 47 2.7e-05 0.003 19.2 2.8 1 23 504 526 504 526 0.98 10 47 2.7e-05 0.003 19.2 2.8 1 23 537 559 537 559 0.98 11 47 2.7e-05 0.003 19.2 2.8 1 23 570 592 570 592 0.98 12 47 2.7e-05 0.003 19.2 2.8 1 23 603 625 603 625 0.98 13 47 2.7e-05 0.003 19.2 2.8 1 23 636 658 636 658 0.98 14 47 2.7e-05 0.003 19.2 2.8 1 23 669 691 669 691 0.98 15 47 2.7e-05 0.003 19.2 2.8 1 23 702 724 702 724 0.98 16 47 2.7e-05 0.003 19.2 2.8 1 23 735 757 735 757 0.98 17 47 2.6e-05 0.0028 19.2 2.7 1 23 768 790 768 790 0.98 18 47 2.7e-05 0.003 19.2 2.8 1 23 801 823 801 823 0.98 19 47 2.7e-05 0.003 19.2 2.8 1 23 834 856 834 856 0.98 20 47 6.1e-05 0.0066 18.1 2.6 1 23 867 889 867 889 0.96 21 47 2.7e-05 0.003 19.2 2.8 1 23 900 922 900 922 0.98 22 47 2.7e-05 0.003 19.2 2.8 1 23 933 955 933 955 0.98 23 47 2.7e-05 0.003 19.2 2.8 1 23 966 988 966 988 0.98 24 47 2.7e-05 0.003 19.2 2.8 1 23 999 1021 999 1021 0.98 25 47 2.7e-05 0.003 19.2 2.8 1 23 1032 1054 1032 1054 0.98 26 47 2.7e-05 0.003 19.2 2.8 1 23 1065 1087 1065 1087 0.98 27 47 2.7e-05 0.003 19.2 2.8 1 23 1098 1120 1098 1120 0.98 28 47 0.00015 0.016 16.8 2.1 1 20 1131 1150 1131 1152 0.94 29 47 2.7e-05 0.003 19.2 2.8 1 23 1173 1195 1173 1195 0.98 30 47 2.7e-05 0.003 19.2 2.8 1 23 1206 1228 1206 1228 0.98 31 47 2.7e-05 0.003 19.2 2.8 1 23 1239 1261 1239 1261 0.98 32 47 2.7e-05 0.003 19.2 2.8 1 23 1272 1294 1272 1294 0.98 33 47 2.7e-05 0.003 19.2 2.8 1 23 1305 1327 1305 1327 0.98 34 47 2.7e-05 0.003 19.2 2.8 1 23 1338 1360 1338 1360 0.98 35 47 2.7e-05 0.003 19.2 2.8 1 23 1371 1393 1371 1393 0.98 36 47 2.7e-05 0.003 19.2 2.8 1 23 1404 1426 1404 1426 0.98 37 47 2.7e-05 0.003 19.2 2.8 1 23 1437 1459 1437 1459 0.98 38 47 2.7e-05 0.003 19.2 2.8 1 23 1470 1492 1470 1492 0.98 39 47 2.7e-05 0.003 19.2 2.8 1 23 1503 1525 1503 1525 0.98 40 47 2.7e-05 0.003 19.2 2.8 1 23 1536 1558 1536 1558 0.98 41 47 2.7e-05 0.003 19.2 2.8 1 23 1569 1591 1569 1591 0.98 42 47 2.7e-05 0.003 19.2 2.8 1 23 1602 1624 1602 1624 0.98 43 47 0.0088 0.95 11.3 0.6 1 23 1632 1655 1632 1655 0.96 44 47 0.058 6.3 8.7 3.9 2 23 1663 1684 1662 1684 0.96 45 47 0.0024 0.26 13.0 2.0 1 23 1690 1712 1690 1712 0.98 46 47 5.1e-05 0.0055 18.3 0.9 1 23 1718 1741 1718 1741 0.95 47 47 1.4e-05 0.0016 20.0 3.6 1 23 1755 1777 1755 1777 0.97
Sequence Information
- Coding Sequence
- ATGAAGTGCCTCAAGGGCCCCAGTGCCTCAAGGACCTTCAGTGCCTCTACTGCTCCCAGTAACAACGACTTCAGGCCCCCAATGGGTCCTAGTTTCCCCAGAACCCTCGCTGCAACTGTCCCCCGTGCCACTAGTTCCCAAACCATGCCCCCACCAGATAAAAAGAATTCtgtgaaaaataaaaccacTGCCGCGACCTTCTTGAATACAATGGATGAGCCGGAGCCCGAAGCTTCCACTGCCattggtaagtttttagtttcttacaataaattaattggtTCTGATAGCCATCCTTATGGTGTAGTGCAGAAGCTGGAGTGTGGGCATTGGGCGGATGAAGCAGCAGAAGACGACGAAGCAGAGTCTGGTGTGACGTACTATGTGGATGAAGAGGGCCGCTACTACTACCAGGCTGCTGGAGCCGATCAGAACCTGGTCTCCCTGCCTTCTGCTGTCTCTGACGGAGATACAGAGgcAACCCCAACCCAAGAAGAAGATCCTATGATGGTTGAGAATGAGGCTTATCAGACAGTCACCCTGGTGCCATCTGACAACGGGCAGGGAGAGGTCAGCTATGTGCTGGTCGTCCAGGAGGAAAACAACCAACCTGTGGTCAACATCAATATCAAGGACGAGAAGGGTACAGAGGATGTGTACACATTCGAAGAGGAAGAAGAGGAGACGGTGGAGCAAGTGGATTCGGAGGAGGATGAGGTAGAGGAAGTGGTCGCGCCCAAACCAGCGAAACAGACTGCGGCCAAGCGCAAGTACAACATGCGGCCCCACTTCCCCTGCCACTTCTGCAACTACATCACCCATCGCAGGTACCTGCTGCTGCGCCACATGAAGTCGCACTCGGAGGCGCGCCCGCACAAGTGCAGCGTGTGCGAGCGCGGCTTCAAGACGTTCGCGTCGCTGCAGAACCACGTGAACATGCACAACGGCGTCAAGCCGCACGTGTGCAAGTACTGCAGCACGCCCTTCACCACCTCCGGCGAGCTGGTGCGTCACGTGCGCTACAAGCACACCCACGAGAAGCCGCACCACTGCGTGGATTGCGACTACGCGTCTGTCGAGCTGTCCAAGCTGCGCCGCCATATTCGCTGCCACACCGGCGAGCGGCCCTACCAGTgcccgcactgcacatacgcgTCCCCGGACACGTTCAAGCTGAAGCGGCATCTGCGCACGCACACGGGAGAGAAGCCCTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCGACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAAGAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGAAATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGCGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAATGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTTTCGCAGTCCAACTCACTTAAAGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATACAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTTTCGCAGTCTAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAAGAGTGAGTATCCAACATGGCCACTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGTTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACAGTGAGTATCCAACATGGCCGCTGCTGTACCAGTGCGACATCTGCAAGCAGTGCTTCTCGCAGTCCAACTCACTGAAGGCGCACAAACTGGTGCACAACGTAGACGAGAAGCCTCAGTTCGCGTGCGAGCTGTGCCCGGCAAAGTGTGGGCGCAAGACGGACCTGCGCATACACATCCAGAAGCTGCACACCAAGAGCGACATGCCGCTCAAGTGCAAGCGCTGCGGCAAAGCCTTCCCGGACCGCTACTCGTGCAAGCTGCACAACAAGACGCACGCGGGCGAGAAGTGCTTCAAGTGCGAGCTGTGTCCGTACGCGTCGACCACGATGCGCCATCTCAAGTCGCACATCCTCAAACACACGGACGAGAAGCCCTTCGCCTGCGACCTGTGCGACCAGGCATTCCGGCAAAAGCAACTGCTCCGTCGGCACCAGAACCTCTACCACAACCCGGAGTACGTCCCGAAGCCGCCTAAAGAGAAGACGCACACGTGCCACAACTGCAAGCGCACGTTCGCGCGCAAGGGCAACCTGATCCGCCACTTGGCCATCCACGACCCGGAGTCGGGCCACCAAGAGAGGGCGCTGGCCCTCAAGATCGGACGCCAGAAGAAGGTCAAGTTCGTCGACGGACAGATGAAGACAGTCCGCGAGGAGGAGTCCGAGGAGGAGAGCGAGGAGGTGGTGAAGCTGAGCATGACGAGGAAGGAGCTGCGCCGCGGCGAGCTGGTGACCGTGTCGGACGGCGACGGCCAGCAGTACGTGGTGCTGGAGGTGATCCAGCTGGAGGACGGCACCGAGCAGCAGGTGGCGGTGGTCGCGCCCGACTACATAGAGATGTCGCACGaaatTGAAGAAGAGGCAAACGAAGAAGAAGTGATAGAGATACATGAGGAGGAGACATCCAACATTAATCTCGAGGGTGATGATGACCGGAATGTCAAGCTTGAGAAAGAGGTCAACGCCTGCTTCGGATTTGATgaaGAAGAAGCAGAAGATGATGAAACAGCTGAACAATTCGTAGTAAGCTTGATTTAA
- Protein Sequence
- MKCLKGPSASRTFSASTAPSNNDFRPPMGPSFPRTLAATVPRATSSQTMPPPDKKNSVKNKTTAATFLNTMDEPEPEASTAIGKFLVSYNKLIGSDSHPYGVVQKLECGHWADEAAEDDEAESGVTYYVDEEGRYYYQAAGADQNLVSLPSAVSDGDTEATPTQEEDPMMVENEAYQTVTLVPSDNGQGEVSYVLVVQEENNQPVVNINIKDEKGTEDVYTFEEEEEETVEQVDSEEDEVEEVVAPKPAKQTAAKRKYNMRPHFPCHFCNYITHRRYLLLRHMKSHSEARPHKCSVCERGFKTFASLQNHVNMHNGVKPHVCKYCSTPFTTSGELVRHVRYKHTHEKPHHCVDCDYASVELSKLRRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWRLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHKSEYPTWPLLYQCEICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLAHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLSNSLKAHKLVHNSEYTTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHKSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNSEYPTWPLLYQCDICKQCFSQSNSLKAHKLVHNVDEKPQFACELCPAKCGRKTDLRIHIQKLHTKSDMPLKCKRCGKAFPDRYSCKLHNKTHAGEKCFKCELCPYASTTMRHLKSHILKHTDEKPFACDLCDQAFRQKQLLRRHQNLYHNPEYVPKPPKEKTHTCHNCKRTFARKGNLIRHLAIHDPESGHQERALALKIGRQKKVKFVDGQMKTVREEESEEESEEVVKLSMTRKELRRGELVTVSDGDGQQYVVLEVIQLEDGTEQQVAVVAPDYIEMSHEIEEEANEEEVIEIHEEETSNINLEGDDDRNVKLEKEVNACFGFDEEEAEDDETAEQFVVSLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -