Scos014542.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463302.1:7618463-7632116[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.8 3.2e+03 -0.5 0.1 19 26 83 90 79 93 0.87 2 18 7.7 1.4e+04 -2.5 0.0 18 27 110 119 105 125 0.81 3 18 0.019 33 5.8 1.8 8 30 142 164 135 173 0.72 4 18 0.0051 8.9 7.7 1.8 6 38 168 200 165 201 0.74 5 18 0.047 82 4.6 3.4 5 33 195 219 192 230 0.82 6 18 0.0025 4.4 8.6 5.6 18 38 235 256 223 258 0.89 7 18 0.017 30 6.0 0.6 16 32 261 278 257 284 0.76 8 18 0.02 34 5.8 2.1 6 33 276 307 275 313 0.68 9 18 0.022 38 5.6 3.7 5 38 307 340 303 341 0.78 10 18 0.0012 2 9.7 0.6 5 38 335 368 333 374 0.85 11 18 0.031 55 5.1 6.1 8 38 366 396 361 403 0.81 12 18 0.018 31 5.9 2.2 18 38 403 424 398 430 0.92 13 18 0.058 1e+02 4.3 1.0 17 30 430 444 423 453 0.72 14 18 0.0057 9.9 7.5 4.2 17 38 458 480 447 482 0.78 15 18 0.0066 12 7.3 1.9 5 33 475 503 473 508 0.81 16 18 0.0081 14 7.0 2.4 6 33 504 531 503 537 0.77 17 18 0.00033 0.58 11.5 4.2 6 38 532 564 531 565 0.85 18 18 0.0042 7.4 7.9 2.3 19 38 572 592 566 592 0.90
Sequence Information
- Coding Sequence
- ATGGGCATGGAAGGTGCCGTGGTGAAGATATCGGCGGGCGCGGGCTCCGAGCACGACCTGCACGCGATGTACAAAGTCAACGTGGAGGACCTCTCGCAACTCCTCGCCTACCATGAGGTCTTCGGAAAACTGAACGCCGAGGGACAACCACAAAATAAACAGCAACTGGAACAGGTAATAACTGAGGTAGAGGTCGAAGCGGGCACGAGCGCGGGCATGGAGGAGTCGTCGCCTGGACACCACTCGTGCGACCTCTGCGGGAAGATCTTCCAGTTCCGCTACCAGCTGATCGTGCACCGGCGCTACCACGGCGAGAGCAAGCCCTACACCTGCCAGGTGTGCGGCTCCGCCTTCGCCAACCCCGTCGAGCTGTCCAGGCACGGCAAGTGCCATATGGCCGGCGACCCGGCGGAGCGACACGCGAAGAGGATGACGCAGGACAAGCCTTACGCCTGCACCACGTGCCATAAGACGTTCTCCCGCAAGGAGCACCTCGACAACCACGTGCGCAGCCATACGGGCGAGACGCCTTACAGATGTCAGTTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACCAGGAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATATGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAATCATATGAGGTCGCACACGAACGATACGCCCTTCCGATGTACGCTCTGCGGCAAGTCCTTCACGAGAAAGGAACACTTCACCAACCACATTCTGTGGCACACTGGCGAGACCCCGCACCGCTGCGACTTCTGTTCCAAAACGTTCACCCGCAAGGAGCACCTGCTGAACCACGTGCGGCAACACACGGGCGAGTCGCCGCACCGCTGCAACTTCTGCTCCAAGTCGTTCACGCGGCGCGAGCACCTCGTCAACCACGTGCGGCAGCACACCGGCGAGACGCCCTTCCAGTGCGGATACTGTCCGAAGGCGTTCACGAGGAAGGACCATCTCGTTAACCACGTCCGGCAGCACACGGGGGAATCCCCCCACAAGTGCACGTACTGCACCAAGTCGTTCACGCGCAAGGAGCATCTGACCAACCACGTGCGGCAACACACGGGGGAGTCGCCCCACCGCTGCTCCTTCTGCGCCAAGAGCTTCACTAGGAAGGAGCACCTTACCAACCATATCAGACAGCACACGGGGGAGACTCCGCACAAGTGCACGTACTGCCCGCGCGCCTTCTCGCGCAAGGAGCACCTCAACAACCACGTGCGCCAGCACACCGGCGACGCGCCGCACACCTGCACCTACTGCAACAAGACCTTCACCAGGAAGGAGCATCTCGTCAACCATGTTAGACAACACACGGGCGAGACGCCGTTCAAGTGCACGTTTTGCGCGAAGTCGTTCTCGCGCAAGGAACACCTGACCAACCACGTGCATCTGCACACCGGCGAGACGCCGCACAAGTGCCCCTTCTGCACCAAGACCTTCTCCAGGAAGGAGCATCTCACCAACCATGTCAGGATACACACGGGCGAGTCCCCGCACCGGTGCGAGTTCTGCCAGAAGACGTTCACGCGCAAGGAGCACCTCACGAACCACCTGAAGCAGCACACGGGCGACACGCCGCACGCCTGCAAGATCTGCGCCAAGCACTTCACCAGGAAGGAGCATCTCATCACGCACATGAGATCGCACAGTTGCGGCGAGCGGCCGTTCAGCTGCGGCGAGTGCGGCAAGTCGTTCCCGCTGAAGGGCAACCTGCTGTTCCACGAGCGCTCGCACCAGAAGGGCGGCAACGGACCGCGGCCCTTCCGCTGCGATGTTTGCTCCAAAGATTTTATGTGTAAAGGACATCTCGTGTCGCACCGGCGGACGCACGCCGAACACGAGAGCGGCGAGCAACCCGCGGAAAGCGAAGATTGCGGCGACGGGGTCAAGTGCGAAAAGGAACCCGTGGATCGGAAACCCGAAATTAGAGCATCAACGGAAAACAGAGCAACGGAGCAAGCTACTGTCGCGCAGCATCAACAACAGAACGCGACACAACCTACAGTTATGCAAATAACGAGTCAgCAAGTTGTGCGCGCGGGCGTGCCGACGAACGGTGGCGCGGTGAACGCGGGtggcgcggcgggcgcgggcgcgggggcgggcgtGGCCACGTTCAGCCACGCCCCCGCGCCGCACGCCGCGCACCTCGCCGGCGTGCACCACCCCGTCACCGTCAACTACTAG
- Protein Sequence
- MGMEGAVVKISAGAGSEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQPQNKQQLEQVITEVEVEAGTSAGMEESSPGHHSCDLCGKIFQFRYQLIVHRRYHGESKPYTCQVCGSAFANPVELSRHGKCHMAGDPAERHAKRMTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCTLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCSFCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFSRKEHLNNHVRQHTGDAPHTCTYCNKTFTRKEHLVNHVRQHTGETPFKCTFCAKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDTPHACKICAKHFTRKEHLITHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHQKGGNGPRPFRCDVCSKDFMCKGHLVSHRRTHAEHESGEQPAESEDCGDGVKCEKEPVDRKPEIRASTENRATEQATVAQHQQQNATQPTVMQITSQQVVRAGVPTNGGAVNAGGAAGAGAGAGVATFSHAPAPHAAHLAGVHHPVTVNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337083;
- 90% Identity
- iTF_01337083;
- 80% Identity
- iTF_01337083;