Scos031054.2
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- clz9
- Assembly
- GCA_949820665.1
- Location
- OX463314.1:9137662-9142846[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-08 2.1e-05 25.4 0.0 2 38 9 44 8 49 0.87 2 2 2.9 2.9e+03 -0.7 0.0 25 35 643 653 642 658 0.83
Sequence Information
- Coding Sequence
- ATGGCACCCAAACGAGATTATTCCAAAGAACAAATGAGTAGAGCAATCGATGAAGTACAGAAAGGAGAAAAGGTATCTGTCGCGGCTACAAAATACGGTGTCCCCAGAATAACTTTGAGGAACAAAGTTAAGGGGATAAGCCCGCTGGACTGTAACTTAGGGCCTTCCACAGTGTTGCCCttagcagaagaagaagtattggtCAAATGGGTTTTATATATGGCTGAAAACCATTTTCCAGTCACGAAAGACCATTTATTGGATAGTGTACAAAAAATTATTCGGgacaaaaaaatagaaaactgTCCATTCACAAATAATCGCCCAGGAAAAAAATGGTTCAGTTCGTTTTTGAATCGTCATCCAGAATTGGCACAAAGAACGGCACAAAATTTAACTAAGGCTAGAGAAGATGTAACTGAAGAGGAGTTGAACCAATGGTTTGAAACCATAAATAATTACCTAGAAGATAAAGGGTTGTCAAATGCACTAAAGGACCCCATAAGGATATACAACACCGATGAAAGTGCTTTTTATTTGCAGCCTAAAGCAGGCAAAGTCCTAGTGCGTAAAggtgaaaaaaatgtttatagttCCTCTGGCGacgaaaaagaaaacttaactGTTTTAATTATTGCCAATGCTGCAGGAGTTATAGCTCCACCTATGATCGTGTATCCATATGAGAGAATACCACCAAACATTGTCCAGAGTGTTCCTCGTAGGTGGGGTATAGGGCGGTCGGAAACGGGGTGGATGACTGCAAAGACATTCTACGAATTTATCGCCAATGTTTTCAACCCATGGCTTATACGAGAAGAGATACCAAAACCAGTGATTTTTTTTCTGGATGGGCATAAGTCCCACATGTCACTGCATCTTGCAAACTTCTGCAGAGATAATGGTATAGAGTTAATTGCACTTTTCCCCAACTCCACTCACCTAATCCAGCCAATGGATGTTGCGGTCTTTCGCCCACTCAAAACTTCCTGGAGAGTGCAGGTCATGAAATGGAAGGCTGAAAATCCAGGCGCACGTTTGAAAAAGGAAGATTTCGCGCCAAATTTGCAAGAGGCTTTGAGAAGCATTACTACTGAAACCATAAAAAACGGTTTTCGTAAAAGCGGCCTTCACCCATTTAGCTCGGAGTATGTCGATATGACCAAAATTGCTTCCGCAAATCGCACAATAAGATCTGAAGCACACCAGACGGAAGATACAATAAAAAGAACGCAGTTTATGCAAACTTTAGAAGCAGAGATacagaaagtatttttatcagaaaaaaatactcttttCAACAAACTGTACTTCATGCCTAGAAGTGAAGTTGAAAATCTACTGCCTGACGAAGATCAATCTCTTTATATTATATGGGCTAAgaccaaaaatattttgactGGAAAACTTCCCGTTTCACCAGCTGATAATGATGAAACCGAATTTGATCTGGTAACATCCATTGGATCAAAAGATTTACCACATAATATAGATGATTCTAACGCAGCTACGGCTACATCTACAAAAACACCAGATATGTTAACACCACCGTTAAGAAATAATCAAACCCCCAAACAGTCTGcatatgaaactgaaccacttggTGATGACCCATCATCTTTTAAAAGAGCTTTGACTTTCAACGAAAGTCTCCCACTGAACACCGGTCAGCTTAATGAGGCTTTGACAACAAGCAAACCCTCCAAATCATCTGCAATTAAAATCACACCAAACAGTGACCTTTCACCGCCTTCGCCTCAAAAACAAGCTTCCTGCCGTAAAATGCCACCTCCCACAACTGTAACCGAATCTGGGCAACCAACTTCCACTTTATCTAAAAATACACCAATAAGTGGTCTACCATCGCCTTCGCCACATAAAAAAACTGCCACATGTCTTAAACTGCCACCTCTCGCTACTGACACTGAATTTGGCCAACCAAAATCCACTTTATCAAAAAGTAAGCCGCTTACTACAGATGGTTTCAATGCGATTGCAGCCACAACCTCGTCAGATTTAAGTACACCGCATAAATCCAATCAATCTTCCAAATTATCCTCATCTACGCCAATTGGTGATATTCCGTCACCCTTTAAACGAGCCTTTTACTGGCCCGAACCAGAGATTAAAAAACGCCGGACTAAGGAGAGACTGCCGTCGGCTATTACCAGTGACCCCTACATAGAAtacatagaaaaaaaagaaaaggaaaagaaacaaaagatagaagaaaaagaaaaacgtgcaaaagaaagaaaagaaaaacagttAGTACGAGAAAAACTAATGCAAGAAAAGAAAGTTAATAAGGAAAATAAGAAAGGCAAAGTAAATACTAAAGCAGCAAAGTTAAAGAGGAAACATAAATCAAGTTCATCATCGGATGAAATTAATACTGATGTTGAATATCAAGATAGTGAATATGATTTGGAAGATGACCTGTCTAAATCAGAATCTGAAGAAGACAACATACCTTTGAAAACATTAGGACTGTCACAGAAGAGggaaaagaaaagtaaatacgTAATAATACAATATGAAGGAGAATATTTTCCTGGCATGATTAAGAAAGTTGAGGGTAATCAATATGAAATAAGTACAATGGCGATATCAAAGGGTAAATACATTTCGTTGGCCAGACCCCATAGACCAAATATGATCTCGTGCTACCTAGTCTGCCGCAACGTGCAAAGCGCGTACATCCTGGCCGCACGGCACGAGCGCACCAAGGACCTGCGCCGGGTGCTGCAGGAAGCTGAACGGCTGAACAACGAGCACGTTCGTAGTGCTGCGCTCAAGCGACTCGCAAGCAAGAGTGGACACTCGTGA
- Protein Sequence
- MAPKRDYSKEQMSRAIDEVQKGEKVSVAATKYGVPRITLRNKVKGISPLDCNLGPSTVLPLAEEEVLVKWVLYMAENHFPVTKDHLLDSVQKIIRDKKIENCPFTNNRPGKKWFSSFLNRHPELAQRTAQNLTKAREDVTEEELNQWFETINNYLEDKGLSNALKDPIRIYNTDESAFYLQPKAGKVLVRKGEKNVYSSSGDEKENLTVLIIANAAGVIAPPMIVYPYERIPPNIVQSVPRRWGIGRSETGWMTAKTFYEFIANVFNPWLIREEIPKPVIFFLDGHKSHMSLHLANFCRDNGIELIALFPNSTHLIQPMDVAVFRPLKTSWRVQVMKWKAENPGARLKKEDFAPNLQEALRSITTETIKNGFRKSGLHPFSSEYVDMTKIASANRTIRSEAHQTEDTIKRTQFMQTLEAEIQKVFLSEKNTLFNKLYFMPRSEVENLLPDEDQSLYIIWAKTKNILTGKLPVSPADNDETEFDLVTSIGSKDLPHNIDDSNAATATSTKTPDMLTPPLRNNQTPKQSAYETEPLGDDPSSFKRALTFNESLPLNTGQLNEALTTSKPSKSSAIKITPNSDLSPPSPQKQASCRKMPPPTTVTESGQPTSTLSKNTPISGLPSPSPHKKTATCLKLPPLATDTEFGQPKSTLSKSKPLTTDGFNAIAATTSSDLSTPHKSNQSSKLSSSTPIGDIPSPFKRAFYWPEPEIKKRRTKERLPSAITSDPYIEYIEKKEKEKKQKIEEKEKRAKERKEKQLVREKLMQEKKVNKENKKGKVNTKAAKLKRKHKSSSSSDEINTDVEYQDSEYDLEDDLSKSESEEDNIPLKTLGLSQKREKKSKYVIIQYEGEYFPGMIKKVEGNQYEISTMAISKGKYISLARPHRPNMISCYLVCRNVQSAYILAARHERTKDLRRVLQEAERLNNEHVRSAALKRLASKSGHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -