Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463295.1:1180980-1183388[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.6e-08 1.5e-05 25.8 0.0 3 35 16 48 14 54 0.91

2 2 0.34 3.4e+02 2.3 0.1 19 29 352 362 351 363 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.6e-08	1.5e-05	25.8	0.0	3	35	16	48	14	54	0.91
2	2	0.34	3.4e+02	2.3	0.1	19	29	352	362	351	363	0.85

Sequence Information

Coding Sequence: ATGGCGTCATCAGAAAAAAAACCAGTTCGACAGCAATGGGACAAGGACTGCATGACTATGGCTATTTTAGCTgtgcgagaaaaaaaaatgggataCTTAAAAGCATCCAAAACCTTTGGTGTTCCTAAAACTACACTTATAAGATTATCACAAAAAAGTAAGCAGCCACTGGGAGAGATAACTAACATGAAACTAGGAAGGAAAGCTACGCTACCACCTGAATTAGAAAATGATTTGGCAGACTATGCCCTTAAAATGGAGGCAGCGGCATTTGGTCTAACTCGAAGTGACCTTAAAACTTTAGCTTATCAATtagcagaaaaaaataaattagatcaCAATTTTTCAAAAGATAAGCAGTCGGCTGGTAAAACTTGGCTACGTTTGTTTTTGAACCGCCACCCAGAACTTTCATTTCGTCGACCTACAGGGACATCTGTTGCAAGACTGAAAGGTTTTAACAAAGAAAAAGTCGATGAATTTTTCAAGTTGCTGGAAGAGGCTATGAATAAAAACAAGTATACCCCGAACAACATATATAATGTCGACGAAACTGGCATTACTGTTGTGCCTGGAAAAATGCCAGAGGTATTAGCTCGAAAAGGCAAAAGGCAAATTGCAGCTGTAACCTCGGCCGAAAGAGGTTCTACTGTTACTTGCGTGATGTGTATGAATGCAAGTGGGACATATGTCCCACCCATGATGATATTTCCTCGTAAACGGGACAACCAACTACTGATGAGAGGTGCTCCGCCTGGTGCAATCCACGCCTGCCATCCTTCAGGCTGGATTCAGACTGATCTCTTCACAAAATGGTTTAAACACTTCTTGCGATTCGTAAAACCTACTGCTGAATCTCCAGTCTTATTAACCTTAGATGGTCATGCAAGTCATACCCGGAATATAGAACTAATTGATTTAGCTCGAGCGAATCATGTACAACTTCTGTCATTGCCCCCACATTCAAGCCAGAAAATTCAACCTCTTGACCGTACATTCATGGGtccttttaaaaagtattttactgAAGCAACCCGCCAATGGGTAAACAGCAACGCCAAAGCGGCATCTATATTTGATATTGCTGAACTATTTGGCCGTGCTTATGTAAGAGCACAGCGTGCTGATTTAGCCATCAATGGTTTTCGTGTAACTGGGATATGCCCTATAGATAGAGGTGTTTTTCAAGACCATGACTTCATTGATGATGAGCCAGTTGATTTAAATACTAACTCCACAGAaaagcacacacacacaagcaCACAGTTGGCTATAGAAAACTCGGATGATTTGAGTGATGATGACATCGACATGATTAATCCCCCGACCCAGTCAGTTCACCATACAGAAGACATATTGGATTCTAATAACCGTGCTGAAGATCATGATTCAGACCAAACTTTTTGTGAAGAACTGAGTAATTCTTCAGTGAATGCAGACAAAATATTTGCTCCCTCAACCATCGAAGTTCCAAGTTTAGTTAATTTAGCCCTAAAGACCGCTTTGCTTGCTTGTAAAATCGCTGTTTATGCTCACAAGACCAAGCCCTTAGGAGCGAACTCTGACAATTTAGTGGCCTATCCTTCAACGTCTAATGATTGCAGATCTCCCAGAAATTATGATGCATTTGAAGAAGTGTTAGCAGGTCCATCTACATCAGCCAGTTATAATATCTTCAGTACAAATGCATCCCATACCACGCCTACAAAACAAACGAGTAACAAAGGAAGAAAGGGAACCAAACCTATGCCCTTAGTAGCGAACTCTGACGCTGTTCATTTAGAGGCCTGTCCGTCAACGTCGTCTAATGAGTTACCAAAAAATATAGTGCCTCAGAATTGCAGTTCTTCCTATACGTCTGCCATTTATATATCTCCAATACAATTGCGTCCCATACCAcgcctacaaaaaaaaacgagtaaCAGGGGAAGGAAGGGAACCAAACCTATGCTTTTGACTTCATCACCTTATAAAATTGATTTAGAGACATCAATCAAAAAAAGGGAAGAAACAgaggcattaaaaaaaaagaagattttcaACATTGAATTAGACAAGCAGAACCTAAAAGGGAAAACGAAGAAACCTGGAAATAAGAGAAAACtgaaaagtaaagaaaaacaaaagaaaacaaaaggaAAGAAAAGCAAAACTACAACTGCAGTACGCCAGTCAACATCCAACTCTGAAGATGaagacaatgagttttcagttaatgatgaAACTGACGAAAGTCCAGATCGTAGCCAAAGTGAAAACgctaaatgtttttattgtgaCGGGTTATTTTCAGAGGACACTCGTGGGGAACTATGGGTCCAATGCGTTTCTTGCAAGAGATGGGTCCACGAAGAATGTGCAGGTGTTGACAATGGCACATTTGTGTGTGAATTTTGTCTGTCTGATTAa
Protein Sequence: MASSEKKPVRQQWDKDCMTMAILAVREKKMGYLKASKTFGVPKTTLIRLSQKSKQPLGEITNMKLGRKATLPPELENDLADYALKMEAAAFGLTRSDLKTLAYQLAEKNKLDHNFSKDKQSAGKTWLRLFLNRHPELSFRRPTGTSVARLKGFNKEKVDEFFKLLEEAMNKNKYTPNNIYNVDETGITVVPGKMPEVLARKGKRQIAAVTSAERGSTVTCVMCMNASGTYVPPMMIFPRKRDNQLLMRGAPPGAIHACHPSGWIQTDLFTKWFKHFLRFVKPTAESPVLLTLDGHASHTRNIELIDLARANHVQLLSLPPHSSQKIQPLDRTFMGPFKKYFTEATRQWVNSNAKAASIFDIAELFGRAYVRAQRADLAINGFRVTGICPIDRGVFQDHDFIDDEPVDLNTNSTEKHTHTSTQLAIENSDDLSDDDIDMINPPTQSVHHTEDILDSNNRAEDHDSDQTFCEELSNSSVNADKIFAPSTIEVPSLVNLALKTALLACKIAVYAHKTKPLGANSDNLVAYPSTSNDCRSPRNYDAFEEVLAGPSTSASYNIFSTNASHTTPTKQTSNKGRKGTKPMPLVANSDAVHLEACPSTSSNELPKNIVPQNCSSSYTSAIYISPIQLRPIPRLQKKTSNRGRKGTKPMLLTSSPYKIDLETSIKKREETEALKKKKIFNIELDKQNLKGKTKKPGNKRKLKSKEKQKKTKGKKSKTTTAVRQSTSNSEDEDNEFSVNDETDESPDRSQSENAKCFYCDGLFSEDTRGELWVQCVSCKRWVHEECAGVDNGTFVCEFCLSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -