Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463316.1:3763054-3768626[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.3e-10 4.2e-07 30.8 0.0 5 41 1 37 1 41 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.3e-10	4.2e-07	30.8	0.0	5	41	1	37	1	41	0.90

Sequence Information

Coding Sequence: ATGCAAAGTGCCATCGCTGCAGTGCGAGAAGGCAGGTTTAAAGTGAGAGAAGCTGCTCGCCATTTTGGTGTGCCACATAGCACactaataaacaaattaaaaggcAGAGTTCCTGAGTATCGAAAAATGGGACGGgacacatattttaaaaaaccagAAGAAAATCTTCTATCAAAATACATTCTAGCAAATGCTAAGAAAGGCATACCCTTTAAAAGAAGTACATTGATcgaaacagtaaaaaaaaatttggacgATGACCAAAGGTTCACACCCTTTAAGAATAATCGGCCAGGAAGAAAATGGATTGATTTATTCTTGAAACGTCATCCggaaattacagaaaaaaaagcgGAGGGCATTTCCACTGCAAGGGCAAACGTTTCTATTGATGATTTAAAGAGGTGGCACAAGTCTCTTGAAGTttacttgaaaaatgaaaatgcgATAGATATTCTTGAGGAACCCGAACGCATTTTTAATGCCGACGAGTCGGGCTTTCAAACGTGCCCCGAATCTGGCAAAGTCCTAGGTCCAACTGGCATGAAAAacttttatcaaattaaaaccGGCAAAGAGAAAGAGCAGTTAACGGTCATGGTGGCGATTAATGCAGCCGGCCAAGTTGTGCCGCCCATGATCGTTTATCCTCTAGTAAGGATATCTAAAGACATAACTATGAATGTGCCAGAAGTCTGGGGCATTGGCAAATCTAAGAAGGGATGGATGACAGGACCAACTTACTACGAGTACATAGCAAATATATATGATCCATGGCTCaaagcaaataatataaaaagaccAGTTTTACTCTTAATAGATGGACATCGTTCCCATATGACTTTACAAGTTTCTCAGTATTGCGCTGATAATAAGATATTAGCCTATGCTCTGTTCCCGAATTCGACACACATCACACAACCGGCCGATGTGTCTGTTTTTAAATGTCTTAAAAGTGGATGGCAAAATACTGTAGCTGAGTACAAACATAATACTGGAAATAGACAGATAACACGCGCCGGATTTGCACCGTTGTTAGCTAAAGTAATTAAAGACAAAGTGACTACAGATGTCGTTAAAAACGGATTCAAACGTTGTGGGATTTATCCCTTCGATATCAATGGAATCGATTTTACCAAATGCATGGACCATGACACAAGAACAATTGCACCAACATCCGAGCCCACAGATGAGGTAGGAGTTGAAACTCTCTTGCTGCTTGAGTCCTTCATGAGACGTGGCCGAGCAGAGCAATTTCGAACAAGTGACGAACAGTGGGATGGAGAAGAATCAGCAAAAGAACTGTTTTACGTCTGGAAAAAATTTCGCCAGCATTGTCTGTGCCCCCCAAATAAAGAGTGGCAAAATTCATCACAGCGTACGGCTGTTTCATCTCCGTCAGTTTTAGAAATAATGCCAGACATTTGCAATACAGTTGACGTGCCTTCAAGGCTTGATGTTCCCAACCCGAATTTGTTACGAGAATCAACGATACCATTGCCACAAAATGCTGCAGATTTCCCAACTGAGTCCAGAACGTCAACTAGGTCTGGAACTCCTGTTTCAAAAAGTCCAGAAATTACACCGCACATAGAGGTATTTGAGCCGAAAACATGGTTTTCGGGTCAAATACCTCTTAGTGCACCGTCTGATGCTGCAGATTTTCCAACTGAGTCCAGAACTTCAACTAGGCCTGGAACACCTATTTTAAAAGTTCCAAAAATTACACCATCCGATGCAGCAGATTTTCCAACTGAGTCCAGAACTTCAACTCGGCCCGGAACTCCTATTACCAAAAGTCCGGAGATTACACAGACCCCGAAAAATAATCAAGATCTTTCAGCCCTAACTGAAAAATCAACTATGCTAAAGATTGTtgctttaaaacaaaaacaaataagccCTGCTTTTGGACATCATATAATATGGCCTTCGGACTCaccaataaaaaagaaaaaaacagaacGATTGCCTTTTGCTGTTACTTCAAAAAAATACCAAGCTTATTGGATtgcgaaagaaaaagaaaaggaagAAAAAGTCAAGAAAGCAGAACAGAGAAAAATTTACCGTGAagaacagaaaattaaaaagtccACCAAAGTAGCTAAAAGAAAAGTACTAAAAAGTGATAGTGATTCGAATGACGAAGGCAAGAAAGCTGGacagaaaaaagaaaatctcgaagaaaagaaaaagttcaCAAGAGTGACAAAGAAAAGAGTACTTAGTAGTGGTAGTGATTCGAATGGAGAATCGCCAGAGAGAGAAGTACAACctatagaagaagaaaataaaagaaccAGACATAGAAGAAGAGTACTCGATGACAAGGAATCAAAGCAAATAATGCGTATCAAGAAAAGAGTAATTAACATCAGTGATTCGGAAGAAGAAGTACAGGAatcttttaagataaatttggatACAGACAGCTATAAAGATACAGAAAATGTAGAATTGCTGTCTTTTAATGCTGAAAATTGTAAAGAAGGagattttgttatatttatttatgaaggaACGTATTTTGTTGGCAAAATTGATTCTATAAATGAAGAAGGAGCATTGATAAAATCGATGGTACAATCTTTAAAAAACTGGAAATGGCCAACAAAAGAAGATCTAAATTTATACGCTCTTTCCGAcgttaaagaaaaaattgagaatCCAAAACTGATAAACGCTAAGCGTGGCATTTATGAAGTTCAAGAATTTGATAAATATAGGGAATTTATCtaa
Protein Sequence: MQSAIAAVREGRFKVREAARHFGVPHSTLINKLKGRVPEYRKMGRDTYFKKPEENLLSKYILANAKKGIPFKRSTLIETVKKNLDDDQRFTPFKNNRPGRKWIDLFLKRHPEITEKKAEGISTARANVSIDDLKRWHKSLEVYLKNENAIDILEEPERIFNADESGFQTCPESGKVLGPTGMKNFYQIKTGKEKEQLTVMVAINAAGQVVPPMIVYPLVRISKDITMNVPEVWGIGKSKKGWMTGPTYYEYIANIYDPWLKANNIKRPVLLLIDGHRSHMTLQVSQYCADNKILAYALFPNSTHITQPADVSVFKCLKSGWQNTVAEYKHNTGNRQITRAGFAPLLAKVIKDKVTTDVVKNGFKRCGIYPFDINGIDFTKCMDHDTRTIAPTSEPTDEVGVETLLLLESFMRRGRAEQFRTSDEQWDGEESAKELFYVWKKFRQHCLCPPNKEWQNSSQRTAVSSPSVLEIMPDICNTVDVPSRLDVPNPNLLRESTIPLPQNAADFPTESRTSTRSGTPVSKSPEITPHIEVFEPKTWFSGQIPLSAPSDAADFPTESRTSTRPGTPILKVPKITPSDAADFPTESRTSTRPGTPITKSPEITQTPKNNQDLSALTEKSTMLKIVALKQKQISPAFGHHIIWPSDSPIKKKKTERLPFAVTSKKYQAYWIAKEKEKEEKVKKAEQRKIYREEQKIKKSTKVAKRKVLKSDSDSNDEGKKAGQKKENLEEKKKFTRVTKKRVLSSGSDSNGESPEREVQPIEEENKRTRHRRRVLDDKESKQIMRIKKRVINISDSEEEVQESFKINLDTDSYKDTENVELLSFNAENCKEGDFVIFIYEGTYFVGKIDSINEEGALIKSMVQSLKNWKWPTKEDLNLYALSDVKEKIENPKLINAKRGIYEVQEFDKYREFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00178081;
90% Identity: -
80% Identity: -