Sbip020492.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439469.1:4411810-4428762[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.029 1.7 9.6 2.7 1 23 344 366 344 366 0.97 2 15 0.33 20 6.3 0.4 1 23 373 396 373 396 0.90 3 15 0.0034 0.2 12.5 1.2 1 23 427 449 427 449 0.98 4 15 0.94 56 4.8 0.4 2 23 457 479 456 479 0.95 5 15 0.038 2.2 9.2 0.1 2 23 492 514 491 514 0.91 6 15 0.0054 0.32 11.9 0.6 1 20 521 540 521 545 0.94 7 15 2.5 1.5e+02 3.5 0.2 3 10 621 628 620 631 0.93 8 15 2.5 1.5e+02 3.5 0.2 3 10 649 656 648 659 0.93 9 15 1.9 1.2e+02 3.8 0.1 3 10 677 684 676 689 0.91 10 15 2.5 1.5e+02 3.5 0.2 3 10 721 728 720 731 0.93 11 15 1.9 1.2e+02 3.8 0.1 3 10 749 756 748 761 0.91 12 15 0.0045 0.27 12.1 0.1 3 23 793 813 792 813 0.98 13 15 0.0079 0.47 11.4 0.6 1 23 819 841 819 841 0.95 14 15 4.5e-05 0.0027 18.4 7.0 1 23 846 868 846 868 0.98 15 15 0.0029 0.17 12.7 0.4 1 23 874 897 874 898 0.96
Sequence Information
- Coding Sequence
- ATGGTCCTGAATTCAAGATTCAAGACGTATGAGAACCAGAGCCTGAAGTACTGCCGTCTCTGTGAGCACCAGCTCCGCAAATGCTATAACTTCAAGCAGCGCTGCCTCCGAGCCAATGCACTCATTAAAGCATGGCGGAAGAAGAAGCTCGcgTTATTCCCGAAGAACCTGCACGTGCTTCTGCCCCCCTCACCCCTCGCGCCGTGCTCCCCCGCCGCCCGCCATCAGACCACAGAGTATATATACTCGGACCACGGCCCATCGGCCGTACAACGAGATACCTTCACAAACCTCATTAATGAGAACGAACTGAccagtgatgatgataatgatggacAAGAGGACATCCCGCTTAGCAATATACAGATGACTGATATGGACCTGGAGCTGAAAGATCTGGCGTTGGGGTTGAAGGAGGAACGAGACATGTCCTCGGAGGCGCCCTACAGCGACGACAGCGACTTGGAACATGTTCTAGACAGGTACATTAAAACGGAGAAAAAACCCAACACACGATCGAAAAGTAAAACGAAAGTTCAGAAATCTAAGAAAAACGACCTCAAAGTTGAGAagaagaacaaaattaaggcGAAAATTGAGTTCGCTGATGTTGACGGCAATACTATGAGTAAAGATACACAAGTTGTCACTCAAGATACTCAGGTTGATACTCACGTGGATGATGATAAATCGCCTCAAGCTAACAAAAAGTACATTAATATAAAGCAGAAAATACTGGAAATATTCGACAAAGGGGAAGTAAACGAGCTGGGAGACAGTTCTAAAATGAATAAGgatgtatttttgaaaatttacgACAAGTTTTTGCTTTCCGACATGAGAATGTTGTCCTTGAAGAAAGactcACAAGGACAATATCACAAGTTAAAAAAAGCACTTCAACATTTACTGAAGAAATACAACCCCGACTATGAAACAGTATTTGATATTGAATATCTAGACACAGAGGAGAAGAAACTGAACGAGTTCAACCGAAGGAAGGACAGCAAGAGCTACATGGACGCCACCTACAAGTGCGAGCTGTGCTATAGAGGTTTCGAGAAACAAACGCAATTCCAGTATCACAACAAGTGGCATACGCCAGCGGCCGGCGAGTTCCTCTGCGGGATCTGCGGGATGAGGTTCCAGTCTCTCAAGACGCGCGCCTCGCACCGCGCCTCCTCGCACTCCGCCGTCTACACCTGCCGCATGTGCCCGCTCGTCACCTACCACTACCCCGTGATGTTGAATCACTACGAGCAACACAAAGGCGTTGAGTACTCCTGTCCGACTTGTCTCAGCGTCTTCGAGAATAAAACGACGTTCATGAACCACCAACGCGACCACAACGCTGACAAGAAGAAGTCCACCTGCTCCTCCTGCGCCATGACCTTCATCTCGGACGTCGGGCTCATGCTGCACAGGAAATCGAAGCACACGGACGCCTTGCCGGTGAATCCTGGCGTGCACTCCACCTGCCAGGAGTGCGGGATCACCTTCGACTCGACAGAGGTCTACATGAAGCACGTCTCCCTCGCGCACACCAAGAAGATTGAGTCGTACCGATGTGCTTACTGCCACATCCGCTTCGGCACTCTTGAGGAGTTGAGGAGCCACAAGGTGGAACAAGGCCACCAGCGCGCCTCCAAGAAGTACGCGCAGCGCTCGCAGAGGTCCAACGACCCCAACCCCGTCAAGAAGATCAAGATCAACACGCCGGACAAGCCCTTCGTCAAGTGCGAGCTGTGTCCAGCCATGGTGTCCACCGCGTACACTTCATGCATGTACAAGCATTTCCTCAAGGAACATCCCGACATCCCCTACTCGTCGGTCTACTCGCAGACCGCCAGGAGACTGCTCTGTGACCTCTGCGGGAAGACCTTCATGGAACATCCCGACATCCCCTACTCGTCGGTCTACTCGCAGACCGCCAGGAGACTGCTCTGTGACCTCTGCGGGAAGACCTTCATGGAACATCCCGACATCCCCTACTCGTCGGTCTACTCGCAGACCGCCAGGAGACTGCTCTGTGACCTCTGCGGGAAGACCTTCATGGTGAGTCCACTGTGGgcagtatgtttgtatgtacaaCCAGTTCTCAAGGAACATCCCGACATCCCCTACTCGTCGGTCTACTCGCAGACCGCCAGGAGACTGCTCTGTGACCTCTGCGGGAAGACCTTCATGGAACATCCCGACATCCCCTACTCGTCGGTCTACTCGCAGACCGCCAGGAGACTGCTCTGTGACCTCTGCGGGAAGACCTTCATGGTGAGTCCACTGTGGgcagtatgtttgtatgtacaaCCAGTTCTCAAGGAACATCCCGACATCCCCTACTCGTCGGTCTACTCGCAGACCGCCAGGAGACTGCTCTGTGACCTCTGCGGGAAGACCTTCATGGACCCGGCGTTCTTCGCCGACCACGCCAACATGCACGTCGGCGTGAAGCCGTACCTGTGCACGGTGTGCCCGGCGCGCTTCGCCACGCGCCGCCACCTCGGCCTGCACGCGCAGCGGCACGGGCCCGCGCGCCACGTCTGCAACCACTGCGGCAAGCGCTTCCACAGCGCCGCCAACCTCTTCAACCATAGGAAGACGCACATCGGCGACCGTCGCTTCAAGTGCGAGATCTGTTCTAAGGGCTTCCTGCACGCCGCCACGCTCAACGAACACGTCAGGGGagtacatcatcacatccggAAACACAAACCGCCCAGAGACCGCAAGATATCCTACTGA
- Protein Sequence
- MVLNSRFKTYENQSLKYCRLCEHQLRKCYNFKQRCLRANALIKAWRKKKLALFPKNLHVLLPPSPLAPCSPAARHQTTEYIYSDHGPSAVQRDTFTNLINENELTSDDDNDGQEDIPLSNIQMTDMDLELKDLALGLKEERDMSSEAPYSDDSDLEHVLDRYIKTEKKPNTRSKSKTKVQKSKKNDLKVEKKNKIKAKIEFADVDGNTMSKDTQVVTQDTQVDTHVDDDKSPQANKKYINIKQKILEIFDKGEVNELGDSSKMNKDVFLKIYDKFLLSDMRMLSLKKDSQGQYHKLKKALQHLLKKYNPDYETVFDIEYLDTEEKKLNEFNRRKDSKSYMDATYKCELCYRGFEKQTQFQYHNKWHTPAAGEFLCGICGMRFQSLKTRASHRASSHSAVYTCRMCPLVTYHYPVMLNHYEQHKGVEYSCPTCLSVFENKTTFMNHQRDHNADKKKSTCSSCAMTFISDVGLMLHRKSKHTDALPVNPGVHSTCQECGITFDSTEVYMKHVSLAHTKKIESYRCAYCHIRFGTLEELRSHKVEQGHQRASKKYAQRSQRSNDPNPVKKIKINTPDKPFVKCELCPAMVSTAYTSCMYKHFLKEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMVSPLWAVCLYVQPVLKEHPDIPYSSVYSQTARRLLCDLCGKTFMEHPDIPYSSVYSQTARRLLCDLCGKTFMVSPLWAVCLYVQPVLKEHPDIPYSSVYSQTARRLLCDLCGKTFMDPAFFADHANMHVGVKPYLCTVCPARFATRRHLGLHAQRHGPARHVCNHCGKRFHSAANLFNHRKTHIGDRRFKCEICSKGFLHAATLNEHVRGVHHHIRKHKPPRDRKISY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -