Sbip020259.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439469.1:1856771-1878128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5 1.5e+02 3.5 0.3 1 18 207 224 207 229 0.65 2 13 0.1 6.2 7.8 1.1 1 20 283 302 283 304 0.94 3 13 9.4 5.6e+02 1.7 0.8 1 13 708 720 708 726 0.82 4 13 0.016 0.97 10.4 0.5 1 23 742 764 742 764 0.95 5 13 0.25 15 6.7 2.1 3 23 771 791 769 791 0.92 6 13 0.15 8.7 7.4 0.2 2 19 817 833 816 837 0.70 7 13 0.00025 0.015 16.1 0.2 2 23 892 913 891 913 0.94 8 13 2.3 1.4e+02 3.6 0.1 2 23 929 950 928 950 0.94 9 13 7.7e-07 4.6e-05 24.0 3.3 1 23 956 978 956 978 0.99 10 13 0.00016 0.0095 16.7 0.3 2 21 984 1003 983 1004 0.94 11 13 0.099 5.9 7.9 1.8 2 23 1018 1040 1017 1040 0.93 12 13 0.88 52 4.9 0.3 1 19 1045 1063 1045 1064 0.87 13 13 0.0019 0.11 13.3 0.4 3 23 1077 1098 1076 1098 0.97
Sequence Information
- Coding Sequence
- ATGTCTGAAGGCAGGAAAAGAAGCAGAAAGTCAAAATTGGAGGTTCGAGATGACGATTGTGAATTTGAAGTCATGAGTGAGCAGAATGAAACGACTTCGCATTTGCAGATTATATCAAAACTTGCTGAAACTGTATATCAGGTAGTACCAGTGCTATACAATGATCATGACTATTGCCTTATACATAGAACTTACCCAAAATCACAACGGCTCACAGAAAACTCAACTGTTGCTCTCCCGGTCTTAGTCAAAGTTGAGTCTCGCGATAGGAATCGACAGTTAACAGAGAAAAGGCCAAAAATGGCATcgaataaaaatcaaaaaatgaaaatgttagaaaatagaaaaactaATAATGCAAGAAAAACGCCAGATCCTAACACAATCAAACTATGCAAATACGTTCCTGATATACTTTATTCCATATCGAAAGAGATTTCATCGAGCTCGGACAGCATTGCAGACAAGATATTGGATATAGAGATGAGGAACTTGTGGGGTAACGTCTTGTATGCTCAAAATGTAGTCAGTCAACATGAGAGTCTGCTGCAAACGACTTTGGAACTTTGGCAAATTTGGTACTCAGCATCGAGGCTGGTCCGAGACTGCCCACTCTTCTACCAGTGTCACATTTGCGACCTCGCTTGGTGGAGACTACAGCCTTTCCGAGACCACATAAAAATACACGATGTGAAGACCTTAAAACTGTCTCTGAAGGAAAACGTCCATGAATGTATGTTGATAGCGAGCATCGGACCAGTCGACAAGTTAGTTTTCATCGATATAAATGAAGATTGTTGGAAATGTGGGAAAGATTTGGACTTCCACAAGTGTTCGGCTAAAGGTTACCGCTGCAGTCGATGCAAGAAAGGCCTCTACACTTGTTCGTCTCTCATTGAACACGAGTCAGTCTGCCTCTACTCAAACTACACAAGTTTCAACATAGCAAAGGAACGGCAATGTGtgatttgcaaatatttcctcgaCTCTATCCAGGATGTAGACAAGCATATGATTGAAGCCCATTCTGTTCGATCAGATCTGCTTGCTCCGGCTTCTTGCAAGTTATGTGCCTCTTGTAACAGTTCCTACTTCACTTTTAACAGGCATAATTGTAGTCGGAGCTCTAAGAATTCTTCCTGTGACTTTTGTATAAGAAAATACGCCACAAAACCTCTGGCCGTCGCTCACATGGTGTCTCCTCACAATGGTATGATTGAATGCAGAATTTGCAGCAAACAAATTGATAAGAAATGCCAGGAGTTGGAGCACATGGTGTTTGAACACACCAATAACTATCAGTTAGTGTACAAATGTACAATATGCTCGGACCAGGAGAATTTGTATCTGGATGAAATGTCCATTAGGACACATCGACAACTTTGGCATAACATGAAAGCTGATAAGAGAAGATCCTTCTTTGAAAtgATGCTGGTACCGAAGCTATGTTTAATGGTATGTGATACGGAGGAAATCACTTTACAAACAGatGCTCAAGAAACTACCGAAGCAGCTTCCAATATATTAGCTGATGTACAAGTCACCGTCGACGAAGTTGACATCAAAAAGGAACCTTTGGAATACAAAGAAAATGGCGAAATTGATTACGAAGAGATGCTGCACAACATGTTCAATCAAGACGAATGTAGAACAGATAAAGATAATGAGAAAGAATTGTTAGATAATGTTGTAGTTAAGGAGGAGATAGAGGTTACTGATAATGTTGTTGAAAATATCGTAGTGAAGTCTGAACCTATGGACTTTTATGAATATCAAAACGAAACTGTCGAAAATGAACATCAAAATGCAGTGGAACTCCAGTGTCAAGAAAATATATCGGATAATCAGATATTCCAGAATCAGGAATATCAAAATGTATCAATTAAAGAAGAACCTGAGACTTTGATAGTCAAAATTGAATCAGATTTAGACATAGACAACATTACAGAggacaatattataataaaaaatgaaatttcaGACGAATCTGAAGTCATAAAGTCACTTATTGGTCTAACAAAATCTCGTAAAACTACTAAAAAGGATCCAAGTTGGAAGAACACAGGCGAAATATCACTAAACGTAATCAATAGTAGCGGAATTTTTAAGAAGAAAAGGGTTTATTCTTGTCGAAAATGTGGATACACAGCCCCCCATAAGAAATATAAGCTACATATTACTTCAAAATGCAAAGTTTCACCCAGTATTGGCGGAAATGGGAGTTATGTGTGCTCTAAATGTGGCTTGACCTTTGCTATCTTTAGTAACTATGTGTTACACTTTGACAGCCATGGATATGAAGCTATGACTTGCATTAAGTGTGGGGAGACCTTCGATGTGCACGTAAAACTGATATCACATATGCACCAGCATATGAAAGCCAATTTTGTAGGGATCCATGTCTTGGATAAGGGCGGTATGGAGTCCAGGAAGTATATCAAGGATATCAAGTGCCAAGAGTGTGGTAAAATTGTATCTCGCAGAGACATGTTCCTGCATTGGGAGACACATCTCTCTCTCAAACCAAGCTCTCAGGCCACTACCCAGGTAAAAGAGGAGGCGCCTGAGTATACAATAGACTGTGAGCGAGTCActataaacagtaaaaattTGGGACCGTCCGCCTTAAAACTGGCTATAGatCACCTACAAGCCCCAACGTCTACAGAGAAGGAGTGTGTGATATGTTACCGCGCGTTCGCCCGCCGGTACGACCTCAAGAGGCATATCGTCGAACATCTGCTAATGGACGCACACGTTAAAAAACCGGACAACAAATGCCTGATGTGCCAGATCTGCGGCGCGCGCTGGGCGAGGCCGGAGCTGTATAAGTTCCACATGAGGGAACACGGCGCCATGCCGATATTCAAGTGCGAATTGTGCAACAAGACATTCAGTGACTCGTCTAACTTCGCTAAGCACAAGAAAACCCACAACGTGCGTGTTCTAGTTTGCGATATGTGCAATAAGAAATTCCACCAGCGGTCAGCGCTCATCAAGCACATCCAGGCAAGTCCGAATACTGACGATCACAGCAAACAAGCACCGATCCCATGCTCCTTCTGCGATCAGACGTTTATGAACAAGAAGAGATACAAAGTCCATAAGTACAGAATGCACGTCACAAAGAAGTTCAAATGCCTGCTCTGTGAGATCAGCTTCAGCAGCCTCCGTCAGAAATGGGACCACAACTGGGAGGTGCATAAAGAAAGGAAATGCAAAGCGGACTGCCCTATATGCAGCAAGTCGTTCCGCAAGTTCCAAGATGTCAGGATCCACGCGCGCTCCGAGCACAAAGTCGAGCTGTCCACCGTCAAGCAGATCATAAGGGGAAACGTCAATGTGTACCAAGTTAAGAGCATAGGAGAAGCTTTGAATATCCCCAAACATCAAGGATCGGAACATCAATTGTACCTCGGAGGCGATCAAAAAGTCGACGAACCTGAATGTGATGGACAAGGACAAGGTCAAGGTCAAGTTAAATGTCAAGGTCAAGTTAAAGGTCAAGGTCAGGGTAAAGGTCGAGCAGCGAGAAAAAAGCGAAAAAGAGAGCTTTAA
- Protein Sequence
- MSEGRKRSRKSKLEVRDDDCEFEVMSEQNETTSHLQIISKLAETVYQVVPVLYNDHDYCLIHRTYPKSQRLTENSTVALPVLVKVESRDRNRQLTEKRPKMASNKNQKMKMLENRKTNNARKTPDPNTIKLCKYVPDILYSISKEISSSSDSIADKILDIEMRNLWGNVLYAQNVVSQHESLLQTTLELWQIWYSASRLVRDCPLFYQCHICDLAWWRLQPFRDHIKIHDVKTLKLSLKENVHECMLIASIGPVDKLVFIDINEDCWKCGKDLDFHKCSAKGYRCSRCKKGLYTCSSLIEHESVCLYSNYTSFNIAKERQCVICKYFLDSIQDVDKHMIEAHSVRSDLLAPASCKLCASCNSSYFTFNRHNCSRSSKNSSCDFCIRKYATKPLAVAHMVSPHNGMIECRICSKQIDKKCQELEHMVFEHTNNYQLVYKCTICSDQENLYLDEMSIRTHRQLWHNMKADKRRSFFEMMLVPKLCLMVCDTEEITLQTDAQETTEAASNILADVQVTVDEVDIKKEPLEYKENGEIDYEEMLHNMFNQDECRTDKDNEKELLDNVVVKEEIEVTDNVVENIVVKSEPMDFYEYQNETVENEHQNAVELQCQENISDNQIFQNQEYQNVSIKEEPETLIVKIESDLDIDNITEDNIIIKNEISDESEVIKSLIGLTKSRKTTKKDPSWKNTGEISLNVINSSGIFKKKRVYSCRKCGYTAPHKKYKLHITSKCKVSPSIGGNGSYVCSKCGLTFAIFSNYVLHFDSHGYEAMTCIKCGETFDVHVKLISHMHQHMKANFVGIHVLDKGGMESRKYIKDIKCQECGKIVSRRDMFLHWETHLSLKPSSQATTQVKEEAPEYTIDCERVTINSKNLGPSALKLAIDHLQAPTSTEKECVICYRAFARRYDLKRHIVEHLLMDAHVKKPDNKCLMCQICGARWARPELYKFHMREHGAMPIFKCELCNKTFSDSSNFAKHKKTHNVRVLVCDMCNKKFHQRSALIKHIQASPNTDDHSKQAPIPCSFCDQTFMNKKRYKVHKYRMHVTKKFKCLLCEISFSSLRQKWDHNWEVHKERKCKADCPICSKSFRKFQDVRIHARSEHKVELSTVKQIIRGNVNVYQVKSIGEALNIPKHQGSEHQLYLGGDQKVDEPECDGQGQGQGQVKCQGQVKGQGQGKGRAARKKRKREL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -