Basic Information

Insect: Scotopteryx bipunctaria
Gene Symbol: -
Assembly: GCA_949320045.1
Location: OX439453.1:9354914-9370627[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.1 3e+02 2.5 0.1 3 20 263 280 261 281 0.89

2 9 0.00082 0.049 14.5 1.6 1 23 336 358 336 358 0.97

3 9 0.22 13 6.8 0.0 1 18 364 381 364 381 0.91

4 9 2.1e-05 0.0012 19.5 2.4 1 23 382 405 382 405 0.97

5 9 0.00082 0.049 14.5 0.5 1 23 549 571 549 571 0.96

6 9 3.8e-05 0.0023 18.7 0.1 1 23 577 599 577 599 0.99

7 9 2.4e-06 0.00015 22.4 0.3 1 23 604 626 604 626 0.98

8 9 0.00013 0.0078 17.0 1.2 1 23 632 655 632 655 0.97

9 9 8.5e-05 0.0051 17.5 0.1 3 23 664 685 662 685 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.1	3e+02	2.5	0.1	3	20	263	280	261	281	0.89
2	9	0.00082	0.049	14.5	1.6	1	23	336	358	336	358	0.97
3	9	0.22	13	6.8	0.0	1	18	364	381	364	381	0.91
4	9	2.1e-05	0.0012	19.5	2.4	1	23	382	405	382	405	0.97
5	9	0.00082	0.049	14.5	0.5	1	23	549	571	549	571	0.96
6	9	3.8e-05	0.0023	18.7	0.1	1	23	577	599	577	599	0.99
7	9	2.4e-06	0.00015	22.4	0.3	1	23	604	626	604	626	0.98
8	9	0.00013	0.0078	17.0	1.2	1	23	632	655	632	655	0.97
9	9	8.5e-05	0.0051	17.5	0.1	3	23	664	685	662	685	0.94

Sequence Information

Coding Sequence: AtggatgctgatgatgatatgattCTAATTATTGTTGGTGAAGAAAATATCAGTAAGAAAAATCTTCCTTTTGCTCTGCCGAACCACATCAAAGAAGATTTGGATGATGGCGATGATGTAGCAATCTATTTCAAAGAAGAACCTGATGATGACCAAGAAGGAACAATCCATTTCAAAGAAGACTCTGATGATGATCATAAAGGAACAAACCATTTTAAAGAAGATTCAGATAAAGAGCATGAAGTAACAATTCGCATTAAAGAAGATTTGAATCATGACTATAAAGGAACAATCCATATCAAAGattttgatgatgattttattgaaactgaATCAGATGTAGATTTTATTGATGACGATAACTATGGAGAGTGTGTCAGTGAGTTAAAAGTAGAATATTATGATCATGAACATTTGGAAGATGATTGTGATAGAAAGGTACAAGATGAGCCTGTTCTTAAAAATCAGCAATTCAAACGTAAAAAGCGTAAGGCAGCGACTTCCCAAAATAAAAGCATTGATGATGGTGATAACGTCACAGAGATGCCTCGGCAGTCTTACATCGCAAAACTGCTTAAAAACTTCCCAAAAATTCGCAGAGATGAGGATTATCTTGTGGCGCATTTGACCGAGATGATGAGACAAACCATACCTCCCGTACCACCAAAAGATTTCTGCTTCGAAGTAAAGAATATGCTTGTATGTTCATACTGTAAATTTGAAAGTGCCACACTGCCCATTGCTTGTCGTCACTTCCAGAAGAAGCATGGCACTAGGTACCTGATCTGCTATGCTTGTGGAGCTAACTTTAAGACGACCTTGGGTTTGTACAAGCATGAGAAATGTTGCCGCGCGCCGAGCGCCAACATAGTGCTGAAGGCACGCGGCAGGTACCTCGGCCGGAGGGGACGGAAACGACCCTATCTCACACAGAACAAGTTTGAGCCGTGGTCTCTGGAAAAAAAGGAATCAAGTGCGGCGGGGGGCGGGCCGCCTGTTCCCAGATTCAACTGCTCGGAATGTTCTGCTAGCTTCAACCACAACGTCCTTTTGAAATCCCACGAGAACATGCATCGTGGGATCCGGCCTTTCCAATGCGACAAGTGCCCCCTCGCCTATACTTCTGCCATAGCTCTGCGCAAGTTCTCGTGTGATCACTGCAAGCGTCGTTACGCACAGAAGGAAGGTTTGCAGCGTCATATTAACAGGGACCACCTCAAACTCCCACCGCCCCAAGCCTGCCCAGTCTGTTCTAATAGGTCCTCCCGGGGCATGGCTGCTTCGGAAGATATCTGTGTCGAGTGGCACGTCGTAGCCAACGATGGAATGCCACCACTGCGGGGCGGCGAGAGACACGGTAGGTGCTCATACTGTAAAGCTGAAAGTGCCACACTGCCCATTGCTTGTCGTCACTTCCAGAAGAAGCATGGCACTAGGTACCTCATCTGCTATGCTTGTGGAGCTAACTATAAGTGTACAACAGGTCTTTACAAGCATGAGAAGCGTTGTCCGGCGCCGGGCGCGTCTTTAGTACTGAAGGCACGCGGCAGGTACCTCGGCCGGAAGGGACGACAACGACCCTATCTCACGCAGGACAAGTTCGAGCCTTGGTCTAAGAGGAACAAGGAAACTACCAAGAAAAGATACTACTGCTCGGAATGTACTGCTAGCTTCGGCCAAAAGGAGGCTTTGAAATCCCACGAGTACATGCATCGCGGAATCCGGCCTTTCCAATGCGACCAGTGCCCCGTCGCCTATACCTCTGCCATCGCTCTGAAGcgcCATCTCCAGACGCACTCAGGCGTGCAGTACATTTGCGATGTTTGCGGACGCTCattcaaaatcaaaacatcGCTTGTAGTCCATATGAACACGCATTTacCTCAACGCAAGTATCCGTGTGATCGCTGCGTGCGTCGTTTTGCACAGAAGACAGCTTTGCAGCATCACATTAACAGAGACCATCTCAATCTCCCGCCGCCTCTAGCCTGCCCAGCCTGCCCTAAAAGGTTTCCGCGCGTTTCAAGTCTCAATGCACACATGAAGGCCAAGCATGGATTGACGCTAATGACTCGTAGGATGTTTTTCAAAGCGCTGCCTTCAATGCAAGAGACGGAGCTAAAAAAGGCGACAATTGTGTTCAATAAAGAATTGAATAGCAGCGATGAGGAATCCAAAACAGTGTCGGAACCTTCGGATGAAAAGGTGGCCAAAACAATGCAGTACAAAAGGAAACTGTTTGCTATAGATACAGATGTTGAAAGGCACACTGTAAACCAAAATGGAGATATTCGAAAGGTACTCGATAAAGTTGTACATCCTGCAAATATTCAATCTGAGACGATCGACGAGATTAGAAAAGCAGTTATCGATCTAAAAGAATCTTGCAGAAAGGAAAGATGGTCTAATAGAGAGCTGTGA
Protein Sequence: MDADDDMILIIVGEENISKKNLPFALPNHIKEDLDDGDDVAIYFKEEPDDDQEGTIHFKEDSDDDHKGTNHFKEDSDKEHEVTIRIKEDLNHDYKGTIHIKDFDDDFIETESDVDFIDDDNYGECVSELKVEYYDHEHLEDDCDRKVQDEPVLKNQQFKRKKRKAATSQNKSIDDGDNVTEMPRQSYIAKLLKNFPKIRRDEDYLVAHLTEMMRQTIPPVPPKDFCFEVKNMLVCSYCKFESATLPIACRHFQKKHGTRYLICYACGANFKTTLGLYKHEKCCRAPSANIVLKARGRYLGRRGRKRPYLTQNKFEPWSLEKKESSAAGGGPPVPRFNCSECSASFNHNVLLKSHENMHRGIRPFQCDKCPLAYTSAIALRKFSCDHCKRRYAQKEGLQRHINRDHLKLPPPQACPVCSNRSSRGMAASEDICVEWHVVANDGMPPLRGGERHGRCSYCKAESATLPIACRHFQKKHGTRYLICYACGANYKCTTGLYKHEKRCPAPGASLVLKARGRYLGRKGRQRPYLTQDKFEPWSKRNKETTKKRYYCSECTASFGQKEALKSHEYMHRGIRPFQCDQCPVAYTSAIALKRHLQTHSGVQYICDVCGRSFKIKTSLVVHMNTHLPQRKYPCDRCVRRFAQKTALQHHINRDHLNLPPPLACPACPKRFPRVSSLNAHMKAKHGLTLMTRRMFFKALPSMQETELKKATIVFNKELNSSDEESKTVSEPSDEKVAKTMQYKRKLFAIDTDVERHTVNQNGDIRKVLDKVVHPANIQSETIDEIRKAVIDLKESCRKERWSNREL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -