Sbip010465.2
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439452.1:4085006-4094251[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 6.2 7.8 1.1 2 20 165 183 164 187 0.93 2 11 0.00051 0.031 15.1 0.3 1 23 198 220 198 220 0.94 3 11 0.0072 0.43 11.5 1.5 1 23 226 248 226 248 0.98 4 11 4.7e-07 2.8e-05 24.7 0.2 1 23 256 279 256 279 0.97 5 11 3.4e-06 0.0002 22.0 2.1 1 23 302 325 302 325 0.97 6 11 1.3e-05 0.00078 20.1 3.4 1 23 331 354 331 354 0.97 7 11 0.034 2 9.4 0.9 2 23 361 383 360 383 0.93 8 11 0.027 1.6 9.7 1.2 3 23 482 501 480 501 0.96 9 11 0.0047 0.28 12.1 1.9 1 23 507 529 507 529 0.98 10 11 7e-05 0.0041 17.8 0.2 1 23 537 560 537 560 0.97 11 11 3.6e-06 0.00022 21.9 2.6 1 23 570 593 570 593 0.98
Sequence Information
- Coding Sequence
- ATGActtcacttttattattaaagtccATGTTGATGGCTAATGCGTTATCAAAAAGcaagaagaaaaagaagaaactGCTGCTAAAACCgaaatcaataaataaactatacaaGGGAGCGCATAATACGAAATGTAGAATTTGTGATGAGGAAGATGGTGAAATACCaatatttaacaattttatacaTCCAAACTTATCTGAGGAAATACACAATTTCTCAGGTGTGCGGGTGGAGAATTCTGATGGCTTACGAAAACACATGTGTCGAAACTGTTTAGATCTACTCAATGGATGCATTATGTTCAGAGAAATGtgtcaaaaaacaaacaaaaagatAATTGAAATGGGTATCAAAAAAGAAATGAATGTGGAACCTGCAGCAGACTGCAATGATTACACAAAAAACAATGATATTGACCAGCATGTGGAAAGTGACAGTTCATACAACATTCCTTCTCCAAACTACTCTGAAGAGTGCACTGTAGAAGTCCGGTGCACATTTTGTGACAAAGAATTTCCTGACATGgccGCATACAATACACATAGACCACAATGCCACAAAGATCAGCCATGTACCCCTAAGAAAAAGTTTCTATGCGATGTTTGCGGAAAAACTTCAAAATCTAAAGCAAGTCTCTTGGTTCacaaAAGTATccatgaaaatatatttccaTTCAAATGTGACAAATGTCCATATAAAGGCCGGTCTATGGATCTCCTGAAAACTCATAAAATGTCACATCTGTCGGAGGCCGAATTGCCGTACAGATGCACACAGTGTCCCAAAGCAACAACCACAGCCAGTAATCTCGCTAGGCACATGCGAGGAGTGCATGGGAGGCGGACAGTGGATCTACTgaaagtgcacaaaaggtCACATCTAACTGAGGCTGAGAGGCCATATAGATGTCCTCACTGTCCGAAGGCCACCACTTCTGCCAGTAATCTATCTAAGCACGTTCGGCATGTGCATAGTGCGAATAAAGCTTACAAGtGTACTTATTGCGAGAAAGCTTTTTCATTCCAACATGATATGAAGAGACACATTAAAGAAATACATCTAAGACAGGGCACGGTTGAATGTGATATCTGTTTCAAGAAATTTAATACTAAaaaaatattACGTGGTCACCAATACAAAATACACAAATTAAAAGGCGAAAGACAAGGTCGCATACCAGCATATTTACAAGTTCAACAGATGGAACCCTATAGTTATTTGGGACCAGTAGATGAATACAGTGATTTCAATGATTTTGATGATACTGATGAATGTCCATACAGTCCTATTCCAAATTACTCTGAGGGGGGCATGGAAAAGAACTTGTCAGAATCTGATAAGAAACTTCTAATCAACTTTgcACTAAATAAGAATAAGCGCCGACCAAATACCCGGCGCCGCCGTCGCAAAGATCAAAGCACGCGATTCGATTCATGCCTTTGTGATGTCTGCGGAAAGTCAATCAAAAAGTCTTCCTTAGCCCAACACAGAATGATTCACGTGAACATATTCCCACACAAATGCGACCAATGTCCGTACAAAGGGCGCACTGCTGATCTTCTGAAAACGCATAAAATGTCGCATCTGCCGAAGGATGAGTTGCCGTACAAATGCACACAGTGCCCAACCGCCATGACCTCTTCTAGCAACCTCGCTAAGCATATCAGAGGAGTGCATGGACGCGCGAAAACAATCAATAGAGCTTACAAgtgtACTTATTGCGACACATCATTTGTATACAAGTATGACATGACAAGGcatataaaagtaaaacataTAAATGCGAAGCAAAACACTATAGCATGTGAACTCTGTTTCGCTCAATTCAGctctaaTTTTGATCTTCCGCGAAAGTGTAGCTCTGATGTAAGTATAAACAATGATCACTATAATGTTTCTGAGAGCTACCACATCGGCACCGATGTTGTGCCGACGGACGCACACTACGACACCTTTGGGAATTTGTTTTACGTAGAGTCTATTCGTGAAGACAACGGATACCATTTTAACATCAATGTTGTGAAGCCCAGAAGTACTACACCGCAAAAAGTTCCAGGTTTGCCTGAAGGAGTCAGCTATTCGATTGCTGTGGACGTAAGGAAAACAAAAGTCTACTTCGGAACTGGAAAGGGAATGTATTTGTACAACTACGACTCTCTAACAGCCATCCCTGTAACCAACTCTTCCTTAAAACTGGACATGATCTTCATCGACAAAAACAGCAATAAGTACATTATCGAAAACGTTGATGGCATTGAAGAATTCTACCTTTTAGATGGCGACAACAAAATTCGTTGCCAAAGTTTGGAAGCTTTGAGTGAGATGGCAATTGATAACAAGaacaacttttactttataagAGAGGACAAATTATATGTTTTGAAAGCGAAAGCTGAAACACCTACTTGCATCAGCGATGTGAACTACGACGGTAACGCTCAAATCTCATTTCACAAGAACAATGTTTTCATAGCCAGCGATAAGTTATCTTACTTTCATGAAAACGACAGCGGGAATCTGAAAGTAGTGGACAATGTTCCCGGCAGTGTAACAGCCATAGCATTTGACCAACAAGGCGAATTCGTACTGGGTATTCAAGGAAAGTTACTGAAGTACAAGAAAAATGAATGCTATTTGCGCAAAAATAGAGTTATAGATGAATACTCTACTGCTTTGTAA
- Protein Sequence
- MTSLLLLKSMLMANALSKSKKKKKKLLLKPKSINKLYKGAHNTKCRICDEEDGEIPIFNNFIHPNLSEEIHNFSGVRVENSDGLRKHMCRNCLDLLNGCIMFREMCQKTNKKIIEMGIKKEMNVEPAADCNDYTKNNDIDQHVESDSSYNIPSPNYSEECTVEVRCTFCDKEFPDMAAYNTHRPQCHKDQPCTPKKKFLCDVCGKTSKSKASLLVHKSIHENIFPFKCDKCPYKGRSMDLLKTHKMSHLSEAELPYRCTQCPKATTTASNLARHMRGVHGRRTVDLLKVHKRSHLTEAERPYRCPHCPKATTSASNLSKHVRHVHSANKAYKCTYCEKAFSFQHDMKRHIKEIHLRQGTVECDICFKKFNTKKILRGHQYKIHKLKGERQGRIPAYLQVQQMEPYSYLGPVDEYSDFNDFDDTDECPYSPIPNYSEGGMEKNLSESDKKLLINFALNKNKRRPNTRRRRRKDQSTRFDSCLCDVCGKSIKKSSLAQHRMIHVNIFPHKCDQCPYKGRTADLLKTHKMSHLPKDELPYKCTQCPTAMTSSSNLAKHIRGVHGRAKTINRAYKCTYCDTSFVYKYDMTRHIKVKHINAKQNTIACELCFAQFSSNFDLPRKCSSDVSINNDHYNVSESYHIGTDVVPTDAHYDTFGNLFYVESIREDNGYHFNINVVKPRSTTPQKVPGLPEGVSYSIAVDVRKTKVYFGTGKGMYLYNYDSLTAIPVTNSSLKLDMIFIDKNSNKYIIENVDGIEEFYLLDGDNKIRCQSLEALSEMAIDNKNNFYFIREDKLYVLKAKAETPTCISDVNYDGNAQISFHKNNVFIASDKLSYFHENDSGNLKVVDNVPGSVTAIAFDQQGEFVLGIQGKLLKYKKNECYLRKNRVIDEYSTAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -