Sbip019981.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439468.1:3447064-3449732[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00069 0.041 14.7 0.5 1 23 26 49 26 49 0.97 2 22 0.00023 0.014 16.2 0.3 1 23 54 77 54 77 0.93 3 22 3.3e-06 0.0002 22.0 3.5 1 23 81 104 81 104 0.97 4 22 0.00091 0.054 14.3 1.1 1 23 109 132 109 132 0.98 5 22 1.8 1.1e+02 4.0 7.3 1 23 138 161 138 161 0.95 6 22 0.029 1.7 9.6 1.7 2 23 168 189 167 189 0.97 7 22 3.1 1.8e+02 3.2 0.8 1 23 237 259 237 259 0.90 8 22 0.2 12 6.9 0.2 3 23 285 306 283 306 0.95 9 22 0.014 0.85 10.6 2.7 2 23 328 350 327 350 0.96 10 22 0.017 0.98 10.4 4.5 1 23 355 378 355 378 0.97 11 22 0.0093 0.55 11.1 5.3 1 23 382 404 382 404 0.98 12 22 8.6 5.1e+02 1.8 3.8 3 23 407 429 406 429 0.91 13 22 0.04 2.4 9.2 2.0 2 20 436 454 436 456 0.91 14 22 0.00056 0.033 15.0 4.2 1 23 503 526 503 526 0.97 15 22 2.5 1.5e+02 3.5 0.2 3 13 556 566 555 577 0.77 16 22 0.072 4.3 8.3 1.0 1 23 598 621 598 621 0.94 17 22 6.1e-05 0.0036 18.0 1.2 1 23 626 649 626 649 0.95 18 22 3.3e-05 0.002 18.8 0.4 1 23 654 677 654 677 0.94 19 22 0.016 0.96 10.4 1.5 2 23 683 705 682 705 0.94 20 22 0.0023 0.13 13.1 2.5 1 23 709 732 709 732 0.97 21 22 0.0019 0.11 13.3 0.6 2 23 739 760 738 760 0.97 22 22 0.00085 0.051 14.4 2.2 1 23 766 788 766 788 0.93
Sequence Information
- Coding Sequence
- ATGTCCACTCACAACTTTGAATATGATAAATCGTTTTCTGATACTATTGAAACCTTCAAACTTAGCAACGATGAGTACACATGCCATGTTTGCGGGGAAGATTTCGTCTTCTTCAAAGTACTGGTCAGGCATATCCGTGCTGTGCACGTACCTAGCGAGTTCGTTTGTGATTTATGTGGAAAGAGGTTTGTTAGAAACGCATCCTACTTGATGCATAGAGATTACGCTCACGGCCCAGGTTTTACTTGCAAGGAGTGTGGGAAAACTTTCTGCAGTACCTCTAAACTCAGAACTCATATCGCCAGAGACCATGATGGGTATACATACAAATGCTCTGAATGTTTGAGCGAGTTTTCCTCACCATATCAAAGGAAAAAGCATATGATTACAGATCATAGTGCTACATCGTTGTTTTCGTGCCCTCATTGCGAAAAGTTTTTCATTTGTGCGTCTCACAGATATTACCATATCAAGAAGGTGCATCTAAAGGAGAAGAATTCTAAGTGCCCTATCTGCCAGGAGGAGGTTTTCGATCGACACCGCTTAAGGCTTCATATGACGAAGCACTTGCGAGAGAAGAACCATGTCTGTGATATCTATGTGAATCCTGAAGGAAAAACGCAATTCACTGCGACTGAATGCAGACGGAGGAATCTCCAAGCATTAGTCAACAACACAACGGTTATACCCTTCAAGTGGAgaggaaaatatttatgtttctttTGCGGAATAGATAAAGAAAATTACCAAGATTTGAAAGAGCATACTAAAACACACGTTCCATGCTCAACTACTGAACCAGCAATTAAACGTCTGAAAGATGAGACGAAAGTAGATGTCTCAGAAACGAATTGCAACGTTTGTTCAGAGCAGTTCCTAAATATCGACGATTTGATATCACATTTGAAGGTAAAACACGATCTATGGTTTGACGAAGACGATGATAACTTTACTCTAGTGACATACAGACTGGCTGATCTGAAATGCTTGGTTTGCGACCAgaattttcaatatttctgTTACCTAATTCGACATATGAATAGCAGCCACCCGTACAATTGCTTTCAATGCAACTTATGCTCCCGGAAGTACAATAAGAAGCGAGATTTCTCTCAGCACTTCCGAATATATCACAAAGAGGAGTACAGATGCCAGAAATGTTCTCTAACATTCACAAAATTTGAAGATTTTCAGAAGCACAAAACAAAGCATTCGTCTTGTTGCATCCTTTGCTTTCAGAAGTTTTCGTCGAATAGGAAAAGATTAATTCACATGAAACAAGAGCATGAAGTAGATTATGGAGGTGAATGTGCATTTTGTCAGAAAAAGTTTCGTACAAAGCACAGCTTTTTAGATCACGCCACCAGATGCAAAGTTTCATCCTCTATAGACGGATCGATTGTTATGAGCAACGATAAGAATAACAAGGTTCATGATCTCAGAAACAGTATAGCCTACATCATCAACATGACCACAGCTATGCCCTTCAAGTTCTTTCACAGTAAATTCAGATGTTTCTACTGCCCAAAAGACTTCACGACCTGCAATGATCTTAGACTGCATACAACAACGGAACATCCTATATGTGAAACCACCTCTCGCGCGATGAAGCTGCGCGGGAGATCGGATGGGGTCAAGATCAAAATCGACATATCCTCCCTACTTTGCAAGATTTGTTCGGAAAAGTTTACCAATTTCATTATAGCGATCAATCATTTGGAAACTGAACACAAAGCAGTAATAAAGAAATGCGTCGATATGTTCATACCTTTTAATTTAGTTCACGATAAGTTCACTTGCCTATTTTGCAGCGTAGAGTTCAGATATTTCAGTTTACTACTGCAACATGTAAATGCTAAACACTCTGAGAATGAATATGTTTGTACTTTCTGCGGTAAGACGTTCCCTTCGTATCCAAATCTACGCGGACACATCTCTCATAACCATTTGGCTGCCAGATTCAAATGTAGCATTTGTGGTCTAGGATTTTCTACAAATGACAGCATGAAACTGCACATGGGTAACACGCATGGGAATAAAGTCATCAGTTGCGATCAGTGCTCGGAGAAATTTATCTCCCGATACCATAAAATGCGGCATATTGTCAAAGCCCACGACGGAGGTCATAAATGCCCTTACTGCAGCTTAGCGTTCATAAAATACTCGTTTATGACTAACCATGTTAGACGGTTGCATCTTAAAGAGAAAAATGTTCAATGTACTCTTTGTAGCGAAAGGTTTTTTGACGCAAGTCGCCTGAAGATGCATATGGTCAGGCACGTGGGTGACAGGTCTTTCAGTTGTGACCATTGTGGGAAGCGATTTCTGAGGAAGAAGAATCTGAGAGGACACGTGGGTCTTCATCTTAAGAACAGTGCTGTATCTTGA
- Protein Sequence
- MSTHNFEYDKSFSDTIETFKLSNDEYTCHVCGEDFVFFKVLVRHIRAVHVPSEFVCDLCGKRFVRNASYLMHRDYAHGPGFTCKECGKTFCSTSKLRTHIARDHDGYTYKCSECLSEFSSPYQRKKHMITDHSATSLFSCPHCEKFFICASHRYYHIKKVHLKEKNSKCPICQEEVFDRHRLRLHMTKHLREKNHVCDIYVNPEGKTQFTATECRRRNLQALVNNTTVIPFKWRGKYLCFFCGIDKENYQDLKEHTKTHVPCSTTEPAIKRLKDETKVDVSETNCNVCSEQFLNIDDLISHLKVKHDLWFDEDDDNFTLVTYRLADLKCLVCDQNFQYFCYLIRHMNSSHPYNCFQCNLCSRKYNKKRDFSQHFRIYHKEEYRCQKCSLTFTKFEDFQKHKTKHSSCCILCFQKFSSNRKRLIHMKQEHEVDYGGECAFCQKKFRTKHSFLDHATRCKVSSSIDGSIVMSNDKNNKVHDLRNSIAYIINMTTAMPFKFFHSKFRCFYCPKDFTTCNDLRLHTTTEHPICETTSRAMKLRGRSDGVKIKIDISSLLCKICSEKFTNFIIAINHLETEHKAVIKKCVDMFIPFNLVHDKFTCLFCSVEFRYFSLLLQHVNAKHSENEYVCTFCGKTFPSYPNLRGHISHNHLAARFKCSICGLGFSTNDSMKLHMGNTHGNKVISCDQCSEKFISRYHKMRHIVKAHDGGHKCPYCSLAFIKYSFMTNHVRRLHLKEKNVQCTLCSERFFDASRLKMHMVRHVGDRSFSCDHCGKRFLRKKNLRGHVGLHLKNSAVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -