Sbip001408.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439441.1:2048067-2061105[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00081 0.048 14.5 0.2 2 23 262 283 262 283 0.96 2 12 0.18 11 7.1 0.2 1 22 288 309 288 312 0.91 3 12 0.002 0.12 13.2 1.6 2 23 416 438 415 438 0.93 4 12 0.00072 0.043 14.6 0.0 1 23 444 466 444 466 0.96 5 12 0.026 1.6 9.7 0.1 1 23 475 498 475 498 0.89 6 12 1.5e-06 8.8e-05 23.1 3.4 1 23 503 525 503 525 0.98 7 12 5.3e-05 0.0031 18.2 2.4 1 23 531 553 531 553 0.97 8 12 2.2e-05 0.0013 19.4 2.9 1 23 559 581 559 581 0.98 9 12 6.7e-08 4e-06 27.3 0.3 1 23 587 609 587 609 0.98 10 12 0.002 0.12 13.2 3.8 1 23 615 637 615 637 0.98 11 12 0.0012 0.073 13.9 1.0 1 23 698 720 698 720 0.97 12 12 3.6e-06 0.00021 21.9 2.1 1 23 726 749 726 749 0.95
Sequence Information
- Coding Sequence
- ATGGAAGTCGTATTGTATAATTCTACTGTTTGTAGATTATGTGGAGAAGAAAACGATAATGGAACATTCTTATATTCAACTGaagaaaataatcaaaacaTTAGTGACCTAGTGAACGCATATTTGCCAATCAAGGTTTCCGATGATGGGCAGCTGCCGCGTACTATTTGCCCAGGATGCACGATCCAATTGGAAGCTACAGTCGAATTCATTAACTTGATAGTCACTGGCCAGAAAGCACTAAGGAGTCTCCATCAGAGGGAGAAAGAATACAAGAAAAATTTAGGCAAAACTGCTAATAATACATCTGATGGTACTATCATTGTTGAAGTGGACCCGAGTGGAGCTAATGGAGCATATCAAGATGAGCATCCCATCTCCCTGCAAGTGGCCGGATTGGACAAACCAAAGCGCAAACGCGGCCGTCCTCCCAAAAAGATAAAGACTCCAGAAGAACAGGCCTTAGAGGCTGCGGCTTTCGAGAAGGAGGTTAAAACCAAGCAGAGAGATGAGGAGCCAACCGGCAAGAGGAGGAGAAAGACTCCTGAGAGATTCAGAGAAGTTGTACAGGGCAAAGAACTTGATCAGATATTTAAAGAGGAAGGAATGACAGATGGTGAAGAGAGTGAGGATGAGCTCAAACCAGAGAAGAGCAAGTCTCCTAAAGACCAGGTCCCAAAGGTGCCGGAAGTTATTGGCCACACAGTGACGGGGGAACTTGTTGTGGTAGTGAAGGGAAAAGGCAGAGGCAGGCCTAAAGgacgCACGAAACAAACCCAAGAGACGTGCGCCATCTGTGGCAAACAGTTCTCAAACTCTGGTCGGTACATGTCGCACATCGCTCAGCATGGCCCCGTGCTCTACCAATGCCAGCTGTGCGCCGAGACCTTCCCCATCCGACTGGACTTCAACAATCATCAGCAGGAGACTGGCCATGAGGGACTCACTGTTCTACCAGGCGtcaaggaagatgatgatgaaaatatcGAGCCAGAACCTCCGGAACTGGCCACCCCAAGCGACCCCCTGCCGCCAACAGAGCTGTTCTCAACTCCTGACCTGGTGGAGAAGCTGGAAGACAACATGGTCTCTATGGGATCCTTGCCCGACCTGAACCCGCAGCCCGAAGCCGACGAGGAGTTCCTGAAGGATTTAGAGGATGGAGCTGATGATGAATCCAAGAAAGATCTTAAACCTGACTTCCAGGAGGTTCCAAATGATGATATGCCCAGAAAGCTCAAGCTGAAGTGTCCGCACTGCGACAAGAAGTATAGCAGCAAGCAGGCAAAGTCTATGCACATCAAGGCAGTACATAAAGGTGAGCGGCCATATATCTGCAACGAATGCGGCGCGTCGTTCGCGTATCCGCGCGCTCTCTCTCTGCACACGCTGGCACATCGCCGGAGGCACACCTCTAAAGGATTCGCTTGTGATCTCTGTGGGAAGGTTCTAAACCATCCGTCGTCAGTAGCGTACCACAAGGAAGCTGAGCACGCCAACCAACAGTACGTCTGCAACAAGTGCGGCAAGAACTTCAAGCATCGTCAACTGTTACAGCGGCATCAGCTCGTGCACACGCAGCTGCGGCCCTTCCACTGCAAGGTTTGTAACGCGAAGTTCAAGACGCGAGCGAATCTGATCAACCATCAAATGTTGCACACCGGCGTTAAGAAGTTCTCCTGCGACGAATGCAAGCAACGCTTCGCACACAAGACCAGCCTCACACTGCACATGCGCTGGCATAGAGGTCAAAAGCCTTATGCGTGCAAGGTTTGCGACAAAGCGTTCACACAGAAAGGCAATCTGTCGGAGCACATGCGTATACATACGGGAGAGAAACCGTTCCAGTGTGCGCTCTGCCCTCGCAAGTTCACCACCTCCTCGCAGCACCGCCTGCACCTGCGGAGACATGAACCCAAAGCTagGTTCAACCCTGTTCAAAGAATGCAATCAAACGAAGAGTCAACGACCACCTTTGTAAGCGATGATGGAAGCCTTATTCACTTCACCATCAACTCCAGTGACGTCACGAGCAACACTGATGACACCGCCACGAATGTTACAAACTCCGAAGGTAACAGCAGTCCAGTGCACAAGTGCGCGTGGTGCGGGCGCGTGTGTGCGTCGCGCTGGGCGCTCGCCAAACACTCGCGCCTGCACACCGGCGAGAGACCCTTCCACTGCCCGCACTGTCCGCGCGCCTTCGCAGACGCATCCAACCTCAACAAGCACAAGAAGCAAGTCCACAAACAAACTTCCCTTCTCGCTGTCCAGCCATCGGCCCTCGCACACAAACCTATCGAGTATCCAGAAGTCAGCTTGTCTGAGGAGCAGTACGTGGTGGAAACTGAGGAAGACGACGAACGGGTCATCTACGTTACGTATGATGTTGATTCGCAATCGTCTGACTACCAGGTCATGGAAGAACAGATTATTTATTCTACAGATTTGTATTCGTTTCAGACTGAGGTGGAGTTGGAACCTCCGAAGGATTGCGAGCTGTACTCTGGTGAATCTCTACTGCTGCAGCCCAAAATGCAAGAAGTGTCCGAACACATGTCTGTGACCGATGAGCAAGGTAACCCGTTACATTTCACAATGCAGGATGGAACGAGACTCGCCATCACGTCTCTAGATGGACAGTCTTTGCagGTCATAACACAGGATGGACAGACGATACCTGTTGAAATTAATGGATTCACTCAGGATGGAGAggaATCTCCAATGCAAGATGTTTCCTTTCAAGAGCTGGAACCAAAAGAAGATGACCCCAGCTCTCCAGTCACGCATTACTACACGATAGTTTAG
- Protein Sequence
- MEVVLYNSTVCRLCGEENDNGTFLYSTEENNQNISDLVNAYLPIKVSDDGQLPRTICPGCTIQLEATVEFINLIVTGQKALRSLHQREKEYKKNLGKTANNTSDGTIIVEVDPSGANGAYQDEHPISLQVAGLDKPKRKRGRPPKKIKTPEEQALEAAAFEKEVKTKQRDEEPTGKRRRKTPERFREVVQGKELDQIFKEEGMTDGEESEDELKPEKSKSPKDQVPKVPEVIGHTVTGELVVVVKGKGRGRPKGRTKQTQETCAICGKQFSNSGRYMSHIAQHGPVLYQCQLCAETFPIRLDFNNHQQETGHEGLTVLPGVKEDDDENIEPEPPELATPSDPLPPTELFSTPDLVEKLEDNMVSMGSLPDLNPQPEADEEFLKDLEDGADDESKKDLKPDFQEVPNDDMPRKLKLKCPHCDKKYSSKQAKSMHIKAVHKGERPYICNECGASFAYPRALSLHTLAHRRRHTSKGFACDLCGKVLNHPSSVAYHKEAEHANQQYVCNKCGKNFKHRQLLQRHQLVHTQLRPFHCKVCNAKFKTRANLINHQMLHTGVKKFSCDECKQRFAHKTSLTLHMRWHRGQKPYACKVCDKAFTQKGNLSEHMRIHTGEKPFQCALCPRKFTTSSQHRLHLRRHEPKARFNPVQRMQSNEESTTTFVSDDGSLIHFTINSSDVTSNTDDTATNVTNSEGNSSPVHKCAWCGRVCASRWALAKHSRLHTGERPFHCPHCPRAFADASNLNKHKKQVHKQTSLLAVQPSALAHKPIEYPEVSLSEEQYVVETEEDDERVIYVTYDVDSQSSDYQVMEEQIIYSTDLYSFQTEVELEPPKDCELYSGESLLLQPKMQEVSEHMSVTDEQGNPLHFTMQDGTRLAITSLDGQSLQVITQDGQTIPVEINGFTQDGEESPMQDVSFQELEPKEDDPSSPVTHYYTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267436;
- 90% Identity
- -
- 80% Identity
- -