Sbip020147.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439469.1:353695-354762[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00023 0.014 16.2 4.2 1 23 71 93 71 93 0.96 2 10 0.00015 0.009 16.8 4.5 1 21 97 117 97 118 0.95 3 10 9.3e-06 0.00055 20.6 0.5 2 23 126 147 125 147 0.97 4 10 5.2e-05 0.0031 18.2 4.2 1 23 153 175 153 175 0.98 5 10 1.6e-07 9.8e-06 26.1 0.4 1 23 181 203 181 203 0.97 6 10 8.9e-05 0.0053 17.5 1.1 1 21 209 229 209 231 0.95 7 10 2.8e-05 0.0017 19.1 3.5 1 23 237 260 237 260 0.98 8 10 6.8e-05 0.004 17.9 1.6 1 23 266 288 266 288 0.98 9 10 3.1e-05 0.0018 18.9 0.8 1 23 294 317 294 317 0.92 10 10 1.8e-05 0.0011 19.6 1.7 1 21 323 343 323 344 0.91
Sequence Information
- Coding Sequence
- ATGCCAAAGGACTGTATGAACAATGAAATGGAAAGTAGAAACAACTATATATGCATTTACGAAGAAACTGCTGAAAAATATGCTGTTAAGGTGGAAGTCGATGTCAAACAGGAAACAGATGTTGACCTCGTTAAGACGGAGAAGATTCTCATTGAGGACTACGACATGGATATCGAAGAAGGATGTCTTATATCTAACAGTCAAGAAATGCACAATTGTAATGCATGTAGCGAGAAATTCTCAACAAAAAGTCAAATGAAAACTCATTTAAGATCTCACTCAAAACCTTTCAAGTGTGAAAACTGCCAAAAGACATTCTACATGTCTCACAATTTGAGGaagcataaaaaaaactgcatcgacaAACCTAACACGGTCTGTCCGACTTGCAACTTAACTCTATCCAACGTGGCCAACTTAAAGAAACACATGAAGACACATTCAGACGAACGACCGTTCATCTGTGATAGATGCAGCAATAAGTTTAAAACCCGGACTCACTTAAAAGTCCATATGAGGATCCACGGAGGTGAGAAGAAGTTTGCCTGCGAAGTTTGCGGGAAAGCTTTCACCCAAATATCCAACTTCAAAACCCACTTAAGAATCCACGAAGGAACAAAACGTTATGCCTGCGAAATATGCGGCAAAGCGTTTCTAACAAACGGGACTTTAAAGTCACATATGCGATGCCATACAAGAGAGCGTCCCTTTCAATGCAACACTTGTGGAATGACGTTCGGTTTCAAATGCAGTTTGAACCAGCACATCCGCAGATTGCACACAGAAGTCAAGGCTTATCCCTGTAGTCGATGCCATCTCTCGTTCAACCATGAAATAGGGCTATCTGCTCATATGAGGGTCCATACTGCAGAACGTTCCTTTCCTTGTGATAAGTGTACTAAATCATTTACTTCTGCTCGTAATCTTAAAGGGCATAACATGCAAGTCCACTCCGAGGAAAGGCCCCACGCCTGCGTTAAGTGCGGGAAGGCATTTAAGAGGCCGGAGCATTTGAGGCAGCATTTTAAGTCGTTCAAGTGCAAAGCTGTACAGCCAAATAATAAAtga
- Protein Sequence
- MPKDCMNNEMESRNNYICIYEETAEKYAVKVEVDVKQETDVDLVKTEKILIEDYDMDIEEGCLISNSQEMHNCNACSEKFSTKSQMKTHLRSHSKPFKCENCQKTFYMSHNLRKHKKNCIDKPNTVCPTCNLTLSNVANLKKHMKTHSDERPFICDRCSNKFKTRTHLKVHMRIHGGEKKFACEVCGKAFTQISNFKTHLRIHEGTKRYACEICGKAFLTNGTLKSHMRCHTRERPFQCNTCGMTFGFKCSLNQHIRRLHTEVKAYPCSRCHLSFNHEIGLSAHMRVHTAERSFPCDKCTKSFTSARNLKGHNMQVHSEERPHACVKCGKAFKRPEHLRQHFKSFKCKAVQPNNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -