Sbip019710.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439468.1:1333165-1348475[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.11 6.3 7.8 0.0 3 23 194 214 192 214 0.96 2 14 0.0025 0.15 12.9 1.5 1 23 292 314 292 314 0.99 3 14 2.9e-05 0.0017 19.0 0.6 1 23 320 343 320 343 0.96 4 14 0.084 5 8.1 5.5 1 23 348 371 348 371 0.93 5 14 2.3e-07 1.4e-05 25.6 1.3 3 23 533 553 532 553 0.98 6 14 0.00018 0.011 16.6 1.3 1 23 559 581 559 581 0.98 7 14 0.037 2.2 9.3 6.6 1 23 648 670 648 670 0.96 8 14 0.0039 0.23 12.3 2.8 1 23 705 727 705 727 0.98 9 14 4.1e-06 0.00024 21.7 0.9 1 23 735 757 735 757 0.98 10 14 0.027 1.6 9.7 2.2 1 23 766 788 766 788 0.98 11 14 0.00011 0.0068 17.1 0.9 3 23 847 867 846 867 0.98 12 14 0.0065 0.39 11.6 5.6 1 23 884 906 884 906 0.97 13 14 1.9e-06 0.00011 22.7 0.7 1 23 912 934 912 934 0.98 14 14 7.4e-05 0.0044 17.7 5.2 1 23 940 963 940 963 0.98
Sequence Information
- Coding Sequence
- ATGGAGATGGATCCGCTGAGCTCATATGGGCAATACAGCACATACCAACCACCGTTTCATCCCCAAACACAGCCCAACATACCCCATCCAGAGCCCAACATACCTCACACTCAGCCCAACATAACTCACTCACAGCCCGACATAGCACATACACAACCTAACATTCCCCATACACAACCCAATAACCCCCAACCACAACCTAACATCCCCCATACACAACCTGACATCCCCCATACGGAACCTAACATTCCCCATTCACAGCCCAACATATCCCATCCACAACCCAACATCCCCTATCCCTATAAAGATTTCTACCCACAACTACCATATAACCAAACCTTACCAAGCAATAACAAGCCCTTAAGTCAAGATGCACCAAATGGTGAAAATGAAGTTCTTAACGGGCAAATGGATACTTCTAATGTTACCGAAGAAAATAATACCCAACCTAATGTTAACGAAGAAGATATAAAACCTGATATATCGAAGATTAAACTTAAGAGAGCCCGGAAACCCAAAGGAAAGACAAGCAGTTACTGGAATAAGAAGATATTGGATAaagattttaagttttatggcTGTTCCGTTTGCAACATCGCGTTTCAAGATCTCACAGAACTTGATGCACATGTAACAATACATAGCAATCGGATAACTAGCTATGATATCCGAGTGCAGAACTTGAAGAAGAGGAAACGCCTCAGGaaagagaagaagaagaagaagaaagatGCTAAAATAAAGAAGGAAGCAGATATTGAAATCAAACCAGAAGACGGCTACATAGGGACTGAGAAAGCTGAGGATTTTGAGAATAAGATAGAGATTGGGAAGAAGATCTCTGAAGCAAAGGAGAAGGGTAAAAATGAGGTGTATAAGTGTTTTGCTTGTAGCAAACAGTTTGCTTTGAGCtattacttaaaaatacatgtCCGATCGCATACAgATGAAAAGCCATATATCTGTAATTACTGTGGCCAGACATTCATAACAGCGAGTAAGCTCGGGAGGCACAACAAGAGAATTCACCTAGCTGTCCGACATCAGTGCAGGATATGTTTCCAATTCTTCAGCAGatTTGAGCTACTAACGAAACATTTTGACAAGAAACACGCTGAACAAAAGTTGGATGGAGAGCCCTATGATTACAACGCCATTCTGCCATATCTAACGGAGCTAGAGGAACAGTTAAAGCTAGAAGTTGAAGCCAAGAAGCCAAAGACCGAGGAGCCCTGGGAGTGGGCCCCGGAGAAACCAGAGACCAAGGTCGAAGGGACAAAGATGGAGGACATGGAAGATTCAAAGATGGTCCCCGTAAAATTCGAGTTTGCTGAAGAGAAGGTGGAAGTGGAAGTCAAGAACGAGCCGGAGGATGAGGATACGGAGACTGTCGATCCTTATCCGGAGGTGGAGGTCATCAACGACGTCTTCGAGCAGGACTCTGATCTGGATGATGTTGATCTGAAGGAAGAAAGACTTCTCTCCACAGACGACGAAGAGGAATACTTCCCCCCCGGCGGGTGGGCCAGGTCTCCCCCCCCTGACTCCCCCCCTCCGCCGCCTACCCCCCCTAAGACTAGGGGGGGAGTGGGCGCCTGCGATCTATGCAACAGAAGCTTCAGTAGCAAATCCTATTTGAAAGTCCATATGAGAACACATACAGgGGAAAAACCGTTTTCGTGCTACGTGtgtggtcgtgggttcataaCCGCCAGCAAAATGCATCGGCACGTTTTAACGCATGATGAGACCTGGCTCGGTGAAGATAGAATCAAGCCAGAGGGCGCTGACATCAAATCGGAAGCAGAAGATGAGGATATGGACACTAAAGAACctattaaGTCAAAGACTACATCCAAGATCGAGAAGGCGAAAGTGAAGCTTCTTAAGAAACCAAACAAGAGGATGGATCCTGAGCTGAAGAAGGGAAGGGGCCGTCCACACTGCTGTGAATACTGCgggaaaaaGTTCCTCCACATTGAAACCCTGCAGGTCCACCAGAAGTCTCATGATGGAGAGGAACTCATCATCAAATGCAACTTCTGTCTGGAGCCACAGCTGAATCAGGAAGCCAGGGCGGAGCACGAGGCAACGCATACGGGACCAAAGCCCTATTACTGTACTTTGTGCGGACGTCATTACAAAGATAAAGGCGCTATGGTGTACCATAGAAAAAACCATAAGCCAAGTGATGAGAAGCGGTTCATCTGTGATATATGTTCTAAGAGATTCAACTCACAGACGAAGCTCGCGAGGCATATACTTACGCATTCTAGCGAGAAGTTCTTGCTGCGGTACGAGTGCCCTGTGTGTGCCAACATGTTTCACACCCGCTGGCATGTTCAAATGCATCTTAAATCCCACCAGAAGGAGGGCTTAATCCTGGAAGAGAATCGGAATGCAGTTCTTGCGATGGTACTTCAGAACGCTCGCAAGATCCCTAAGAACCCCTCCGCCCCtgcccccgcgcccgcgcccgcgccccccgccgccCTGCCCCCGCTGCCTTTGCCCCCGCAGGACGAGAGATCTCGGATATGCAATATATGTGGACAGgtgTTCCAACATTTCTACTATTTGGAGGAGCATTTGAAAACGCACGGAAATAAAATAGCAGTCGAAGATTTGGACAAAGAGGAAGAGAAGAAATATACTTGTCAgatATGTTCAAAATCGTTCAAACTCCACTACTACCTTAAACTGCATAGTTTCACGCACACCAAAGAGAAGCCTTTTATATGCCAGCAGTGTGGAAAAGGCTTTATAACTAAGGGCAAGTTGAAACGACATCTGGAAACTCACCAGGGGTTGAAAAAGTATCAATGTCATATTTGTTGTAAATTTTTCACAAGGCCGAGCTATCTAAGGATACATGTAAGGACGATACATGGAACCCAGGATTATAACTTCAGGGATTATGGGGTTGGGGTGCCGTTGGGGTTAGGTGGGGTTCCTTTGGGGCAGATTACGGATAATAGTATGTAG
- Protein Sequence
- MEMDPLSSYGQYSTYQPPFHPQTQPNIPHPEPNIPHTQPNITHSQPDIAHTQPNIPHTQPNNPQPQPNIPHTQPDIPHTEPNIPHSQPNISHPQPNIPYPYKDFYPQLPYNQTLPSNNKPLSQDAPNGENEVLNGQMDTSNVTEENNTQPNVNEEDIKPDISKIKLKRARKPKGKTSSYWNKKILDKDFKFYGCSVCNIAFQDLTELDAHVTIHSNRITSYDIRVQNLKKRKRLRKEKKKKKKDAKIKKEADIEIKPEDGYIGTEKAEDFENKIEIGKKISEAKEKGKNEVYKCFACSKQFALSYYLKIHVRSHTDEKPYICNYCGQTFITASKLGRHNKRIHLAVRHQCRICFQFFSRFELLTKHFDKKHAEQKLDGEPYDYNAILPYLTELEEQLKLEVEAKKPKTEEPWEWAPEKPETKVEGTKMEDMEDSKMVPVKFEFAEEKVEVEVKNEPEDEDTETVDPYPEVEVINDVFEQDSDLDDVDLKEERLLSTDDEEEYFPPGGWARSPPPDSPPPPPTPPKTRGGVGACDLCNRSFSSKSYLKVHMRTHTGEKPFSCYVCGRGFITASKMHRHVLTHDETWLGEDRIKPEGADIKSEAEDEDMDTKEPIKSKTTSKIEKAKVKLLKKPNKRMDPELKKGRGRPHCCEYCGKKFLHIETLQVHQKSHDGEELIIKCNFCLEPQLNQEARAEHEATHTGPKPYYCTLCGRHYKDKGAMVYHRKNHKPSDEKRFICDICSKRFNSQTKLARHILTHSSEKFLLRYECPVCANMFHTRWHVQMHLKSHQKEGLILEENRNAVLAMVLQNARKIPKNPSAPAPAPAPAPPAALPPLPLPPQDERSRICNICGQVFQHFYYLEEHLKTHGNKIAVEDLDKEEEKKYTCQICSKSFKLHYYLKLHSFTHTKEKPFICQQCGKGFITKGKLKRHLETHQGLKKYQCHICCKFFTRPSYLRIHVRTIHGTQDYNFRDYGVGVPLGLGGVPLGQITDNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -