Basic Information

Insect: Scotopteryx bipunctaria
Gene Symbol: -
Assembly: GCA_949320045.1
Location: OX439450.1:7550676-7557089[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.1e-05 0.0048 17.6 5.5 1 23 169 191 169 192 0.96

2 12 0.0017 0.1 13.5 0.8 1 21 199 219 199 221 0.90

3 12 3.4e-06 0.0002 22.0 1.0 2 23 228 249 227 249 0.97

4 12 2.7e-06 0.00016 22.3 0.4 1 23 255 277 255 277 0.98

5 12 1e-06 6e-05 23.6 0.9 1 23 286 308 286 308 0.95

6 12 0.00047 0.028 15.2 0.1 1 23 314 336 314 336 0.96

7 12 0.00095 0.057 14.3 6.6 1 23 342 364 342 364 0.98

8 12 6.8e-09 4.1e-07 30.4 0.8 1 23 370 392 370 392 0.99

9 12 0.00013 0.0076 17.0 1.7 1 23 398 420 398 420 0.98

10 12 3.2e-05 0.0019 18.9 1.3 1 23 426 447 426 447 0.97

11 12 0.016 0.94 10.4 0.8 1 23 453 475 453 475 0.92

12 12 0.0043 0.26 12.2 0.2 1 21 481 501 481 502 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.1e-05	0.0048	17.6	5.5	1	23	169	191	169	192	0.96
2	12	0.0017	0.1	13.5	0.8	1	21	199	219	199	221	0.90
3	12	3.4e-06	0.0002	22.0	1.0	2	23	228	249	227	249	0.97
4	12	2.7e-06	0.00016	22.3	0.4	1	23	255	277	255	277	0.98
5	12	1e-06	6e-05	23.6	0.9	1	23	286	308	286	308	0.95
6	12	0.00047	0.028	15.2	0.1	1	23	314	336	314	336	0.96
7	12	0.00095	0.057	14.3	6.6	1	23	342	364	342	364	0.98
8	12	6.8e-09	4.1e-07	30.4	0.8	1	23	370	392	370	392	0.99
9	12	0.00013	0.0076	17.0	1.7	1	23	398	420	398	420	0.98
10	12	3.2e-05	0.0019	18.9	1.3	1	23	426	447	426	447	0.97
11	12	0.016	0.94	10.4	0.8	1	23	453	475	453	475	0.92
12	12	0.0043	0.26	12.2	0.2	1	21	481	501	481	502	0.95

Sequence Information

Coding Sequence: ATGGAAACTAAAGGATATATAAATCTTGAAGAGGACAAAGATGATCATGTCGAATTTGAAATTCCTCTAACGCTGCTCCAGTACTTAGGTTCAGAAGAGTgcaatttacaaaacatttgtCGAATATGCCTTTTAACCAGTAATGAAGTACAATATCCACTTTCATCCAACAAAGAATACAGTGTTTTGGCTGATATGTTTGAAGCTATGACATCTATTCAAGTAAGTCCAGAAGATGATTTTCCAAACAGAATATGTTCAAACTGCCAAACCCAAGTAGTCCACTACTTCAAGTTCAGAACGAAATGTGAAAAATCTGATTACATACTGAAATCTATCCTGAAAGGACAATTTTCTATCAAAGATGAGCCCAAATCTGATTGTGTAGAAGTGGATACTGAAGATCAATATGTCaaaaatgaagaaaataatCACCTTATAGATCCTAGCTCCCTACTAACTGAGATAATAGTATCAAGAGCTAAAAAGGAGAAGAAGCCTAAATATGTGTGCTCTTATTGCACTAAGgtaTTCCATCAATTGAAACTGCTGAAGGCCCatcaaaataaacatcatGGAACCACAGATGACCCATTTCCATGTAATGAATGCAATGAAACTTTCATCTCTGAAAATGATCTCAAATTACACTGCATTGTACACAACAAGGGGCCCCCCTGGAAATGTACTATTTGTGATAAAGATTTTAAAGAAAGAACAGCGCTGCGAAGGCACATCCAGCGTCACATGGACTCTAAGCGGTTCTCCTGTGAGGTCTGCGGGAAGATGTTCGTTGAGAGGTACGCGCTGAAACGACACTCGCGCGTACACACTGGCGAACAGGCTGAGAAGAAACATGCTTGTCCCGACTGTGGCAAAAGATTCATCGACAACGCCCAGCTGATGGCGCACATGACTCACCACAGCGGCAAGAAGCCGTTCCAATGTATAGTCTGTGGCAAGGCCTTCCCGTCGCCGCGACTGTTGTCGTCCCACCGCCTTGTGCATTCCGATCTCAAGCCTTATGCCTGTGTATACTGTGATAAGCGTTTCCGCCACGAGTCTACTCGCAACACCCATCACCGGACTCACACGGGGGAGAAGCCGTACGTGTGTTCCATTTGCGGCAAAACATTCATACAGAGCTCCAACATGCGCCTGCATATGCGAACGCacacagGCGAGAAACCTTACCCGTGTTCCCACTGCGATAGCAAGTTCTCATCGGGCTCATCGCTGAAAAGTCACGAAAGGATCCACACAGGGGAACGTCCTTACAAGTGCAAAGTTTGTGGCAAGAGCTTCGCCCGTCTAAATCTAAAGTTGCACATGCGTCTGCATTCTGGCGAGAGACCGTTCGCTTGCAGCGCCTGCCCCAAGAAATATGTCAGCGCCTCGCTACTACGTGACCACTGTCGCGCACACACtggtgaAAAACCATTTGAATGTGCCAAGTGTGAGTCCAAGTTCGCTTCAAAAGCCCTCCTCATAAAGCATCTAAAAAACTTCGAAAACAAtaaatcaaagaaaaaacactcCAAAGATAATGTTATCACTGCCCGTCCACCAGTTCCAAAGAACAAGGTAGCTGCAGATCAAAACGAAGTTGTAACAGTGCCGTTGCAAGAGATCGAAGACATTCCAAATGCTATCATGGAACTAACCCTCGGTACACACGAGAGCTATGATGTGAGCCAAGAACTAGTATATCAAGAGAACAACGTCAAAACCCACTTGATTGTACTAGGAAGCAGCAATACAGTCAGCTTTGTGAGCAACGAAGATGGTGGGGCAAGCGAACTGAATATTGTCACTGTTAATGAGATTGGAGTTACCATGTCTGCAACAAATTCTGAGAGTTGA
Protein Sequence: METKGYINLEEDKDDHVEFEIPLTLLQYLGSEECNLQNICRICLLTSNEVQYPLSSNKEYSVLADMFEAMTSIQVSPEDDFPNRICSNCQTQVVHYFKFRTKCEKSDYILKSILKGQFSIKDEPKSDCVEVDTEDQYVKNEENNHLIDPSSLLTEIIVSRAKKEKKPKYVCSYCTKVFHQLKLLKAHQNKHHGTTDDPFPCNECNETFISENDLKLHCIVHNKGPPWKCTICDKDFKERTALRRHIQRHMDSKRFSCEVCGKMFVERYALKRHSRVHTGEQAEKKHACPDCGKRFIDNAQLMAHMTHHSGKKPFQCIVCGKAFPSPRLLSSHRLVHSDLKPYACVYCDKRFRHESTRNTHHRTHTGEKPYVCSICGKTFIQSSNMRLHMRTHTGEKPYPCSHCDSKFSSGSSLKSHERIHTGERPYKCKVCGKSFARLNLKLHMRLHSGERPFACSACPKKYVSASLLRDHCRAHTGEKPFECAKCESKFASKALLIKHLKNFENNKSKKKHSKDNVITARPPVPKNKVAADQNEVVTVPLQEIEDIPNAIMELTLGTHESYDVSQELVYQENNVKTHLIVLGSSNTVSFVSNEDGGASELNIVTVNEIGVTMSATNSES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -