Sbip019645.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439468.1:518413-522744[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.89 53 4.9 0.3 1 20 114 133 114 135 0.93 2 26 0.089 5.3 8.1 0.1 1 23 165 187 165 187 0.98 3 26 0.00053 0.032 15.1 4.1 3 23 193 214 192 214 0.95 4 26 0.14 8.3 7.4 3.1 3 21 219 237 217 238 0.92 5 26 0.0033 0.19 12.6 0.3 1 23 247 270 247 270 0.93 6 26 0.00023 0.014 16.2 6.4 1 23 276 298 276 298 0.98 7 26 5.5e-07 3.3e-05 24.4 1.5 1 23 305 328 305 328 0.97 8 26 0.018 1.1 10.2 1.0 2 20 442 460 441 462 0.91 9 26 4.5 2.7e+02 2.7 1.0 2 23 467 488 467 488 0.92 10 26 3.2 1.9e+02 3.2 1.7 2 23 494 516 493 516 0.94 11 26 0.00016 0.0098 16.7 0.5 1 23 521 543 521 543 0.98 12 26 0.62 37 5.4 5.2 1 17 546 562 546 567 0.88 13 26 0.00086 0.051 14.4 0.5 1 23 579 602 579 602 0.93 14 26 0.0011 0.065 14.1 1.4 1 23 608 630 608 630 0.97 15 26 0.1 6.1 7.9 2.0 5 23 640 658 638 658 0.97 16 26 0.0069 0.41 11.5 1.4 1 23 664 687 664 687 0.96 17 26 0.019 1.2 10.1 0.3 3 20 697 714 696 716 0.95 18 26 0.00012 0.0069 17.1 0.1 2 21 827 846 826 847 0.94 19 26 0.025 1.5 9.8 0.1 3 23 882 903 881 903 0.98 20 26 0.23 14 6.7 0.1 2 23 909 930 908 930 0.95 21 26 0.013 0.75 10.7 1.5 2 20 934 952 933 954 0.93 22 26 6.2e-05 0.0037 18.0 1.1 1 23 980 1003 980 1003 0.95 23 26 0.001 0.06 14.2 0.8 1 23 1009 1031 1009 1031 0.93 24 26 0.0076 0.45 11.4 0.1 1 23 1037 1059 1037 1059 0.98 25 26 0.0063 0.38 11.7 0.3 1 23 1065 1088 1065 1088 0.94 26 26 0.00048 0.029 15.2 0.4 1 23 1094 1117 1094 1117 0.95
Sequence Information
- Coding Sequence
- ATGGATCTCTCCTCTAACGTCCCGGAGCAACTCTGCCGCGACTGTGTGTCGCAAGTCACCGCCTTCCTGCCTTTCATAAAACTTTGCCAAGAATCAGCCGTGCACTGGACTTATATATCAGAACATCTACTAGATATGTCGATGGAAAAATCTAACACAGCCTTCATTTTTGTAACAGACGTGGGAATTAAAACTGTGGTAGAGCAAAGGGATAGACGGAAAAATCTAGATATTAAGAAAGTAGCTTTTCGAATAAATCGCCTTGGTAAGGATATTGAAAAGCGACAGAATGGGATGCCAGGGTCTACAGAACAGATAGAGAAAGGTACATCGAAGCCTTATACTTGTGGGGAGTGTGGATCGAAGTATGGAAAGTTGAAGAAATTTAATCTTCATTTAGCCAACCAAAACAAGCAGATCTGCGGTCAATGTCACAAAGTAATCGAGCTCAAGATGTTTGGGGATCACTTACAAACTCACAGTATACCTTTCTTTGAATGCGAGATATGCCTACTACCTTTCGAGTTAGAGGAGCAGTTAGATAAGCACAAAAATGTGCATAGGGGAAGGAATATGTGCGGGGAATGCCATAAGACTTTCTCTACCCAAGATATGCTGACTCTGCACGTACACAGACGACACCAGGCAGACATCTGCTACACTTGCAGCAAGAAGTTTTCAAATCGTATTTGTTTGTACAAGCATAGAAGCAAATGTAGGTCGAAGATACTGAGAAAATTTGTTTGTGATTATTGCTCAAAAGTATTCAACGATAGGACCGTGATCAAATCTCATATAACACTTATTCATGCTAAGAAATTGATGCATCAATGCGAGAAGTGTGGAAAAAAATTTAACAGCGCATGCCACTTGGAAGAACATTATGAGACCCACGATGTTATTCTAGACAGATACGTCTGCCAATACTGTGGGAAGACGTACAGCACTTCCGGAGGCTATCGGCGGCACATGAGACTTAAACATTACAGAATGAACCCTGAACTGAAGAGGAGGTACTCGTGTGAAGTCGACGAAGACGCCATACTCCCGCCGGGGCTCTGCCGCGGTTGCTACGAAGACGTTGTTATCGCCGCCAACTTCAAACACCTCTGCGACAAGTCGACCCAGCGCTGGAACGAGGCAGCCACCTACCTCTCCAAAATCAACTTCCAAACGGAAGACAAAACGCTGTTCTACTTGTGCGAGGATAACGACATGATTCTATGCGAGAAGAAGATAGATACAGTCCAATCCGCGGTTAGAACTCTAGCATGCTACAAAAGAACTGGAAAGAAGAAGATACGAAGAAAGGAGATGGTCTGCTCTTGTCCGTACTGCAACAAATCGTTCCAAGCGTTGGCGCTCCTCAACGACCATTTGGAGCACGGCCCTAAAAGAGTCTGCTGTGAATGCGGCATGTTTCTCAGCAAGTCTGAGATCTCGAAACACCTGAACTACGCTCATCAGATCGAGACTGTGCCCTGCACGATTTGCCACGACCTGTTCAATAGTTTCCACGATGCAAAGTGGCATATGATGCAATACCACGGACCCAATAGCTTCACCTGTGAGACCTGCGGACGCGGGTATAAGACAGAGAGAGGGCTGAAAGCACATTGGTACACCCACACGCTCTTCTGCTGCAATAAATGCGGGACAAGCTTCGAAAATAACCGTTGTCTCCGATTCCATGCTACCACCTGCACGGCTAACGCGAAATCCGAGTTCAGCACTTACGAATGTCACGACTGTGGCCTGATATACGATAAAAAACCATCCCTGAAGATACACATAGTTCAAAAGCACTTGAATGTGCTACCGTTCGTCTGCCAGGCTTGTGGTAAGCGAACGTCGACTTTGGCGCATCTGAGATCTCATTCCAAAGTCCACGACAAGGATAGGAAGACATTGCAATGCCACTGCGGGGCGAAGTTTCGGACAGAGCTGGGTTATCGTCTCCACATGCGTATGCACAGCGGTCTGAAGCCATACAAATGCAGCCAGTGTGATGAGAGCTTCATATCAGCGTCTCGACGCTTAGACCATACCAAAAGAAGGCATAAGAGTACGAAGGACTTGGCTCATGGGTGCGATCAGTGCTCCGCGAGGTTCATACGGCCCTGGCAGCTGAGGAAGCATTATTTGCACTTATTGTGTTTTTGGTTCCAGATAAAAGAAGAAAGCTTATGTCCCGCGGGAGTCTGCGTGACTTGCGCAAGCGCCGCACTCGCCGCTGAAGAGTTCAGATTGCTCGTTCAAAGCGCACGTCGCTTGTGGTTACGAGCAATCGCTAACTTACACACCTTGCCTCTAGAGTATTCCGACAATGCAAAGTCCATCTGTGGTTTCATCTCTGAAACCGATGGCGCGATCCAGATCTACAAAGACTTCACCGGCGCTGAACCAAGCGTCGTCGtcaacagaaataaaaaggTCCCGAAACGTGAGAAGAGGGTACCTCGCTCTGGACCAATGGTCTCTTGTCCAGATTGTCCTAAGCAATTTGCCAACCCTCATCTTCTAAGGGTGCATTTGCAGAACAGCGAGCAGAAAGATGCTTGCGGTATCTGTGGGGTGGTTAAAGCTAGGGGAGCAGAAATGAAGGATCATTTGGAGACTGATCATCAACATACTGCGTTGCTTTGCAAGGACTGTCCGACGCTGTTCGGGACTGAAGCAGAGCTAAATTTGCATGAAAGGAAAGCGCATAAAATAGGGGGGTTGACGTGCaacgcgtgcgggaggggttTCAAATGGCCCAGTGCGTTTGATCAACACGCGCAAATGCACGTGGTCTTAACATGTAGACGTTGTGGAACTCAATTTACAAACAGAAGTTGCTACAGAGCTCATCGCGCCGTTTGCGAGCCTGACGCTAAACCTAAACCTAGTAGCGTACCACGTCTCCAACGCTCCAATCTCCGCGATCCGGGGACTTTCGAATGTGATTACTGCAACAAGGTGTACCACACACGTCCGCAATTGAAGAACCACATCCTCTGGATACATTTAGACCACCGCCCTCACCAATGTTCTTGGTGCGGTAAGCGGTTTTACACAGCTGCTCGTCTCACGGAGCATTCTGTGGTCCATACGCGTGTGAGGAAATTCGAATGTGACATTTGCGGTGCCAAATTGGTCTCTAAAAGTGCTGCGATCTATCACAGACGAAGGCACACTGGGGAGAAACCCTACGTGTGCGATGATTGTGGCGCCAGCTTCATCTCCTCGTCGAGGCGATCGGAACACGCTAAGAGGAAACATAATAAAGGAGTAAAGTTTCAGTGCTTGAATTGTCCAGCTAGTTTTGTCAGAAGACGTGAGTTGGAGAAGCATGAAGAGAAGAATCACAAGAAGATGGCCACGCTGTTGTTAGCTGTACCGATAAATTAG
- Protein Sequence
- MDLSSNVPEQLCRDCVSQVTAFLPFIKLCQESAVHWTYISEHLLDMSMEKSNTAFIFVTDVGIKTVVEQRDRRKNLDIKKVAFRINRLGKDIEKRQNGMPGSTEQIEKGTSKPYTCGECGSKYGKLKKFNLHLANQNKQICGQCHKVIELKMFGDHLQTHSIPFFECEICLLPFELEEQLDKHKNVHRGRNMCGECHKTFSTQDMLTLHVHRRHQADICYTCSKKFSNRICLYKHRSKCRSKILRKFVCDYCSKVFNDRTVIKSHITLIHAKKLMHQCEKCGKKFNSACHLEEHYETHDVILDRYVCQYCGKTYSTSGGYRRHMRLKHYRMNPELKRRYSCEVDEDAILPPGLCRGCYEDVVIAANFKHLCDKSTQRWNEAATYLSKINFQTEDKTLFYLCEDNDMILCEKKIDTVQSAVRTLACYKRTGKKKIRRKEMVCSCPYCNKSFQALALLNDHLEHGPKRVCCECGMFLSKSEISKHLNYAHQIETVPCTICHDLFNSFHDAKWHMMQYHGPNSFTCETCGRGYKTERGLKAHWYTHTLFCCNKCGTSFENNRCLRFHATTCTANAKSEFSTYECHDCGLIYDKKPSLKIHIVQKHLNVLPFVCQACGKRTSTLAHLRSHSKVHDKDRKTLQCHCGAKFRTELGYRLHMRMHSGLKPYKCSQCDESFISASRRLDHTKRRHKSTKDLAHGCDQCSARFIRPWQLRKHYLHLLCFWFQIKEESLCPAGVCVTCASAALAAEEFRLLVQSARRLWLRAIANLHTLPLEYSDNAKSICGFISETDGAIQIYKDFTGAEPSVVVNRNKKVPKREKRVPRSGPMVSCPDCPKQFANPHLLRVHLQNSEQKDACGICGVVKARGAEMKDHLETDHQHTALLCKDCPTLFGTEAELNLHERKAHKIGGLTCNACGRGFKWPSAFDQHAQMHVVLTCRRCGTQFTNRSCYRAHRAVCEPDAKPKPSSVPRLQRSNLRDPGTFECDYCNKVYHTRPQLKNHILWIHLDHRPHQCSWCGKRFYTAARLTEHSVVHTRVRKFECDICGAKLVSKSAAIYHRRRHTGEKPYVCDDCGASFISSSRRSEHAKRKHNKGVKFQCLNCPASFVRRRELEKHEEKNHKKMATLLLAVPIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -