Sbip013677.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439457.1:467513-470610[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00039 0.023 15.5 0.2 1 23 66 88 66 88 0.96 2 18 6.9e-07 4.1e-05 24.1 1.3 2 23 158 179 158 179 0.97 3 18 0.00028 0.017 15.9 0.1 5 23 188 207 186 207 0.95 4 18 0.26 16 6.6 0.1 1 23 213 235 213 235 0.92 5 18 0.0019 0.11 13.3 1.8 1 23 241 263 241 263 0.98 6 18 0.00039 0.023 15.5 0.8 1 17 268 284 268 284 0.95 7 18 0.00076 0.045 14.6 0.1 1 23 425 447 425 447 0.97 8 18 1.4e-05 0.00085 20.0 0.5 2 23 454 476 453 476 0.92 9 18 0.0062 0.37 11.7 0.2 3 23 484 504 483 504 0.98 10 18 1.2e-06 7.4e-05 23.3 1.7 1 23 510 532 510 532 0.99 11 18 0.0028 0.17 12.8 0.0 1 23 538 560 538 560 0.95 12 18 0.33 20 6.3 0.1 6 23 570 587 567 587 0.95 13 18 3.9 2.3e+02 2.9 0.0 1 19 593 611 593 613 0.92 14 18 3.7e-06 0.00022 21.8 0.0 3 23 628 649 626 649 0.96 15 18 9.1e-06 0.00054 20.6 0.6 1 23 655 677 655 677 0.95 16 18 0.0084 0.5 11.3 0.4 3 23 685 705 684 705 0.97 17 18 0.015 0.87 10.5 0.6 3 23 709 731 708 731 0.89 18 18 0.012 0.72 10.8 1.1 5 23 740 758 737 758 0.96
Sequence Information
- Coding Sequence
- ATGGAGCTCGTCTGTCTGGAGTGCAACTCGAAAACTTCCCGCGAGGACTTCCCCCACCATTTGAGTTCTAAACATTGTTTGACAAGTCAAGAGGACGTAGAGGCGTTTGTGAGAGATCACGTGACATTTGACGAGAGGCTAGATTCAGAAGACGACACGTCATTCGTCTCAACCGAAGCTTTTGATGGCCAATGCTTTGACTGTCCTATCTGTAGCACAGCATTCCCGTCTCGCTCTCGACTTTCCCAACATCTCACCATACACGACGTAAGTACTGATAGTACATCGTGTGGTGGCGGCGGAAACAACACTGAACTCATAGCCAACTCAAAAAAAGATCCAACTAACCCTTTACAATGCAAAAGCTGTTCCCACCTCGCATCAGATATGACCGCGTTGGTCACTCACACCACCCACTGCACGAACGATCCCCACCCGAGAGACGAGACCAACCAGAAGCGGATCCCTGCCGTGTGCCCGGACTGCAACCGGACGTTTTCCAACAAATACAACATGCTCACGCACATGAAAAGTCACAGGGAGACGAGGAAGTTCGATTGCGAATGCGGAAAGAGTTACAGCACTCGGGGGAACTTGCTTGCGCACGCACGGATAGCGCACTCGGGACGGCTGGTCCATGCGTGCTCGGAGTGCGGGGCGGGCTTCCCGAGCCGCGCCGCTCGCGACGTGCACTCTCGCCTGCACTCCGGCGCCCGACCCTTCGTCTGCGCGCACTGCGCTCGCTCCTTCCGCGCCAAGAACTCGCTGGACAGGCATCGGGAGACGCACGAGCCGCGTCGCCACGAGTGCCAGCTCTGCGGGAAAAAGTTCCGACGGAGGTCGCACCTCAGATGTCGCTCATCGTTTGACTTTCGGGCTACGCGCTATAACTGCGCTTGCGCGCAAACCGATTCGGATGAAGACGAGCTATTGTTGCGTAGGTCCGCGGAGAGCTCGAGGGAGGACTCGCCCGCGCGCGCCTCCGACGACTCCGAGTCGGCGCCGCTCGCCCCCCGCCCCGCCGACCCGCTCGCTCCCCTGCGTCACGCCTTGCGCACCCTGCGCGACCACTACGCCGCGCGACACGCGCACCCGGCCCCCGCGCCCGCGACTGCCCCCGCCAGCGGCGAGGAGGAAGAAGAGGAGGAGGGCGAGCGCGACCCGGACCGCTACGACGACCTCTCGTGCGATAACATGCGCCGCGACCGCTTCGACGAGGCGACGCGCCGCGCGCTCGACGAGGCACGCATCCGTGTCGACGGCCGCACGTTGTACGCCTGCGCCGAGTGCGGCCGCCGCCTCGCCTCGCCGCACGCGCTTCTCAACCACGCGCGCATCCACTCCGGCGAGCGCCCGCAGGTCTGCCACGTCTGCGGCAAGCGCTTCCGCTTCCCCAGCGGCCTCGCGCGGCACCTCGCCGAGACGCAcgagcgccgccgccgccgcgcctgcCCGCGCTGCCGCGTCACGCTCGCCAACGACGCAAACCTGCGCCAGCACCTCCGCACGCACACCGGCGAGCGCCCCTTCCAGTGCGCCACCTGCGGCAAGCGGTTCGCGCAGAGCGGTTCGCTGCACGCGCACCGCCGCACGCACGAGCCGCGCCGCACGCACGCCTGCGCCGACTGCGGCGCCGCCTTCCGCCTGCGCGCCggcctcgcccgccacgcgcGCGCTCACGCCGGCCACCGCCCGCACCGCTGCCCCTGCGGCCGCGCCTTCGCCGCGCCGCACGAGCTGCGCGCGCACGCCGCCCTGCACGCCGAGCGCGCCCCGCACGCCTGCGCGCTCTGCCCCGCCGCCTACAAGCTGCGCCGCGCGCTGCGCGACCACGCGAGTCCTCGAGCAGAGGTTCCCGCGCGGAAACGACGACGATTCGGCTGCCCGACGTGCGGGCGCGTGTTCACCGACGCGGCCAACCTGGCCCGCCACGTGCGCGCGCTGCACGCGGCGCGGCGCCCGCACGCGTGCGCAGAGTGCGGGCGCGCCTTCACCCGCGCGGAGCACCTGCGCGCGCACGCCCTGCGGCactcggcgccggcgccgctgcTGTGCGAGGCGTGCGGCGCGCGTTGTGCCTCGGCGGCGGCGCTGCGCTCGCACCGGCGCACGCACGCGGCGGCATGCCACGCCTGCGCGTGCGGCGCGCGCTTCCGCCGCGCGGGGGAGCTACGCGCGCACGCCTCGGTGCACGGCGGAGCAAGACCTCACGCGTGCGGCTGCGGCCGCGCCTTCCGCCTGCGCGCGCAGCTCAACATGCACGcgcgccgccacgccgccgccgccgccggggaGGACGACGACCCCGCGCCCGACCACTGCGCCGACTTCACCCGCCCCCGCCAGCCGAACGTCCCGATGATCCGAGATCCGTTCATTGATAACCTTGACTTTGACCGAATCGCTCGTGATGTAGCTGacatCGTACCTGGGCAGCGGCGGACTTACATCTTGCTGCACTTCGTGGACCTGACGGATTCGTCCTCGGAGTCGGGCTCGGGCTCGGAGTCGgaggcgccggcgccggcgtcggCGCcggcccgcgccccgcgcccctgA
- Protein Sequence
- MELVCLECNSKTSREDFPHHLSSKHCLTSQEDVEAFVRDHVTFDERLDSEDDTSFVSTEAFDGQCFDCPICSTAFPSRSRLSQHLTIHDVSTDSTSCGGGGNNTELIANSKKDPTNPLQCKSCSHLASDMTALVTHTTHCTNDPHPRDETNQKRIPAVCPDCNRTFSNKYNMLTHMKSHRETRKFDCECGKSYSTRGNLLAHARIAHSGRLVHACSECGAGFPSRAARDVHSRLHSGARPFVCAHCARSFRAKNSLDRHRETHEPRRHECQLCGKKFRRRSHLRCRSSFDFRATRYNCACAQTDSDEDELLLRRSAESSREDSPARASDDSESAPLAPRPADPLAPLRHALRTLRDHYAARHAHPAPAPATAPASGEEEEEEEGERDPDRYDDLSCDNMRRDRFDEATRRALDEARIRVDGRTLYACAECGRRLASPHALLNHARIHSGERPQVCHVCGKRFRFPSGLARHLAETHERRRRRACPRCRVTLANDANLRQHLRTHTGERPFQCATCGKRFAQSGSLHAHRRTHEPRRTHACADCGAAFRLRAGLARHARAHAGHRPHRCPCGRAFAAPHELRAHAALHAERAPHACALCPAAYKLRRALRDHASPRAEVPARKRRRFGCPTCGRVFTDAANLARHVRALHAARRPHACAECGRAFTRAEHLRAHALRHSAPAPLLCEACGARCASAAALRSHRRTHAAACHACACGARFRRAGELRAHASVHGGARPHACGCGRAFRLRAQLNMHARRHAAAAAGEDDDPAPDHCADFTRPRQPNVPMIRDPFIDNLDFDRIARDVADIVPGQRRTYILLHFVDLTDSSSESGSGSESEAPAPASAPARAPRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -