Sbip019973.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scotopteryx bipunctaria
Gene Symbol
-
Assembly
GCA_949320045.1
Location
OX439468.1:3401597-3411281[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 2.5 1.5e+02 3.5 5.0 1 23 68 91 68 91 0.93
2 36 0.29 17 6.4 0.1 2 23 118 140 117 140 0.96
3 36 0.15 8.8 7.4 0.2 1 23 188 211 188 211 0.93
4 36 0.00099 0.059 14.2 1.8 1 23 217 239 217 239 0.98
5 36 0.00039 0.023 15.5 3.6 1 23 245 268 245 268 0.97
6 36 0.013 0.79 10.6 0.4 2 23 276 298 275 298 0.96
7 36 4.1e-06 0.00024 21.7 0.9 1 23 304 326 304 326 0.98
8 36 1e-05 0.00061 20.5 1.4 2 23 333 354 332 354 0.97
9 36 2.5 1.5e+02 3.5 6.1 1 23 468 491 468 491 0.94
10 36 2.8 1.7e+02 3.4 4.3 1 23 562 584 562 584 0.98
11 36 0.7 41 5.2 0.2 1 23 588 611 588 611 0.88
12 36 0.00026 0.015 16.0 1.2 1 23 617 639 617 639 0.98
13 36 0.00055 0.033 15.0 2.0 1 23 645 668 645 668 0.96
14 36 0.00088 0.053 14.4 0.2 2 23 676 698 675 698 0.96
15 36 0.00028 0.017 15.9 2.9 1 23 704 726 704 726 0.97
16 36 9.6e-07 5.7e-05 23.7 0.5 2 23 733 754 732 754 0.97
17 36 0.033 2 9.4 1.7 1 21 760 780 760 781 0.96
18 36 0.018 1 10.3 1.8 1 23 984 1007 984 1007 0.94
19 36 0.02 1.2 10.1 0.2 2 23 1036 1058 1035 1058 0.96
20 36 0.36 21 6.1 0.6 2 23 1081 1102 1080 1102 0.96
21 36 0.0041 0.25 12.2 0.1 1 23 1106 1128 1106 1128 0.95
22 36 0.093 5.5 8.0 2.8 1 23 1133 1156 1133 1156 0.96
23 36 0.086 5.1 8.1 4.8 1 23 1250 1273 1250 1273 0.96
24 36 0.023 1.4 9.9 0.0 2 23 1300 1322 1299 1322 0.96
25 36 0.055 3.3 8.7 2.7 2 23 1345 1366 1344 1366 0.98
26 36 0.0082 0.49 11.3 0.1 1 22 1370 1391 1370 1393 0.89
27 36 1.4 83 4.3 1.3 1 23 1566 1589 1566 1589 0.94
28 36 0.15 8.9 7.4 0.0 2 23 1616 1638 1615 1638 0.94
29 36 0.17 10 7.1 3.6 2 23 1661 1682 1660 1682 0.97
30 36 0.0078 0.47 11.4 0.2 1 23 1686 1708 1686 1708 0.95
31 36 0.48 28 5.8 4.2 1 23 1713 1736 1713 1736 0.97
32 36 0.0062 0.37 11.7 4.6 1 23 1742 1765 1742 1765 0.96
33 36 0.00013 0.008 16.9 1.0 2 23 1773 1795 1772 1795 0.96
34 36 0.0033 0.2 12.6 1.3 1 23 1801 1823 1801 1823 0.97
35 36 1.9e-06 0.00011 22.8 1.5 1 23 1829 1851 1829 1851 0.99
36 36 0.0067 0.4 11.6 3.5 1 23 1857 1880 1857 1880 0.98

Sequence Information

Coding Sequence
ATGGAAACAAAAATTGCTACAAAATCTAAGgcaaataagaataagaaagaAAGCTCTGAACCTGAGAAAGTGCAACCTCTCAAAATCAAACCATCAGCAAAAGCAGAGTTGTTGGACGTCCACAAACATCGGTATAACATCCGTGCGATATTGCAGTATTCAAATGCCACTCCTATTCGGGATCACTACGCTGGCAACGGTTATGCTTGCTGCTTTTGCAAGCAGTTCTTCCACAAGGCGGCCGAACTCAAATCCCACACCATACAAAcacacgatgaccaaacaaaaaaaaaatacatgcaaaAAGCCTTTCTGTCCAAGCTCTTCGTAAAACTAGATATTACGTTCTTACGCTGTAGCATTTGCACACTAGAAATGTCGAACCTTGACGAACTAATCGAGCATTTGAACTCTGTGCACCAAAAAGGAATCCACACCGATATTAAGAATCAAATCATGTGTTTTAAGCTAGACGATGAAGGCTTCCGTTGCTTTATATGCTCTGTTGAGTATCACAGCTTTAAATATTTGCTAgaacacgcacacacacactacAGGAACTTTGTCTGTGAAATGTGTGATGCTGGGTTTATTAATGGTACAAAGCTTTATGCTCACCTGTACAACAAACACAAAGGCGCAGGTTCTCACAAATGCAGCGCTTGCGAGAAAGTTTTCGACACGGCTGTCAAGTTGAAGACACACAAGCGTATCCACTCCGGGCCGGGACTATACAAATGCCATGAATGCGGCAAGAAATTCCCGAAGAGAACTGAAAAGAGAGACCACATGATAAGCTTTCACGGCGTCGAGTTCTCTCAGATCAAATGCACAGCTTGCGAAAGGACGTTCTTAAGCAAAGATTCCTTAAATGTCCATATAAACAGAGACCATTTGATGGACAGACGCTATCAATGCGAGCTCTGCGGGAAGAGCTTTTTCAAATCCTCGCTCTTAAGAGACCACATGGTGTCTCATTCTCTGTTAAGGGAGATTCAATGCAGTAAATGCAGCAAGAGTTTTGCGAGGAAGAGAGCGCTACGAGAACATATGAAGTTGCATGCTAAGGATAAGAGATTTAAATGCTGTTATTgTATCGTCATCAGTGACGTGAAACCCATTAAACTGGAAATAGAATGGGATTTAGAAAGAAATATGGAAGTAAAAACAACACGCATAAAAGAAGAGAAAATGGCGTCTAAAAGTAGAAAAAGAGAAAAAGGAATTACTTCAAAACGTGCGGCAAACCGGAATAAGAATGAGTCTGAGTTTAAACCGCTCAAAATCAAACCACCAGCTAAAGCAGAGCTTTTAGACGTGGATAAGCATCGATATAACGTGCGCGCGATATTACAATATTCAAATGCCACTCCCATCAGGGCTCACTACGCCGGCAACGGCTATGCCTGCTGTTTTTGCAAACAGTACTTCCACAAAGCGTCCGAACTCAAATCCCACACCTTACAAACACACGACGATCAAAccaaaagaaaatacatgCAAAAAGCCTTTCTGTTCAAGCTCTTCGTAAAACTTGATATCACCTTCTTACGCTGTAGCATTTGCACACTAGAAATGTTGAACCTTGACGAACTAATCGATCATTTGAACTCTGTACACCAAAAAGGCATTCACACTGACGTTAAAAATCAAATCATGTGCTTCAAACTAGACGATGATAGCTTCCGTTGTTTCATATGCTCAGTAGAATATCATAGCTTTAAAAATTTGCTAGAACATGCACACACGCACTATAGAAACTTCGTGTGTGATGTGTGTGATGCTGGGTTTATAAATAGATTGAAACTTTACGGCCACGTGTACAACAAACATAAGGGCGCAGGCTCTCACAAATGCGGCACTTGTGAGAAAGTTTTTGACACCCCAATCAAACTAAAGACGCATGAACGTATACACTCTGGGTCAGTACTGTACAAGTGTCATGAATGCGGCGAGAAATTCCCGAAGAAGAAAGAGAAGAGAGATCACATGATAAATGTTCACGGTGCTAAGTTTGCTCAGATCAAATGCACGGCTTGCGAGAAGATGTTCATTAGTAAGGCGTCTCTGAGCGTGCATATAAATAGAGACCATTTAATGGACAGACGCCATCAATGCGAGCTCTGCgagaaaacatttttcacaTCCTCATTCTTGAGAGATCACATGGTGTCTCATTCTCGGGTTCGGGAGATACAGTGTGATGAATGCCCCAAGACGTTCGCGAGGAAGAAAGCGTTACGCGAACACATGAAATCTCATACTGGGGATCGGAGGTTCAAATGCACATACTGTGACATGGCGTTCTTACAGAAATGTAGCTTGAAAGGTCATTTGCgTGTCGACGTCAGCGACCACAAAGCtataaaatcagaagtagAGAATTCTTGGGGAGTTACTATAGTTAAAGTAAAAGGTCCGAAAGCTGACGAAGACCCGACAAAAACTAAAAGTGAACTTAAAACATCGCAATCTAAACGCCAATCAAAGaaggattttaataaatgtaatgtGACCTCACTCAGAAAAGTTAAAGTGGGTacatcaaaaatattaaacaatgAACAGGTGACGGTTGACAAAATGTACAGCCCAGACATGGTTACAAATAAAGcattaaaattgaataaaagtCTTTTACGAAAAGGGGCTTTAAAATCTAGTGAGACTCCTCCGTCTCAAAGAATCATCATAAACCCTCCACCAGACCTAGATTTTACGAAGCAAATTAAAACCATTAAACCTGGTGAAGCTAAAGTcgccaaacaaaaaaaaattcaacctacaaaaaaagaaaCGCCGAAATCAAACGAACCAGTTCAAAGAATCAAAATCATCCCTCCCCCTGATATGGATTTCATGATGGAGCTTGATAAGCACAGGTTTAACATCCGCACTGTGATGCAGAACTCGAACGCTACACCGATCAGGAATCACGTTAAGAGCGGATTTGTCTGCTGCTTCTGCGATGCGCACTTCCCCAGACCAGGTGACCTTAAACTTCACACTATACAGAGCCATGCTGACGacgagagtaaagaaaaattctTTAGAAAAAAGGCCGTTCTGTACTCATTTATGGTGAAACTTGATATAACATCCCTAACTTGCAACATTTGTCATCTCTCAGCGGACACCCTCGATCAACTCATCGAACACCTAAACAGTATACACCAGAAAGGCTTGCACACAGACATCAAGAACCACATTGTATGCTTTAAATTCGACAGCGAAGTAATGAGATGTCTGGTGTGCCTGCTGGAGTTCAACAGCTTCAAGCTCCTATCTGAACACATGAACCAGCATTACACGAATTTCGTGTGCGACGAATGCGGAGCAGGGTTTATCAATCGAAGGCAGTTGTTGTTGCATTCAGACAAACACAAAGTAGGCGCACACAAGTGCGGTTCTTGCGACAAAGTGTTCCAGTCCTTGAAAAGGATGAGGACCCACGAAAGGATAACACATTTATACAACTCTGGACTCGGTGTCCACACCAAGGACCACAAAGCTATAAAAAAGGAACTAGATGTTTCCTGGGAAGTAACTATTGTAAAACTCGAAGATGCAAATGATAAATCTAAAGCCAGAAAGATAAAACTTGATGAGATCCCTCAAAGAtctaaagtaaagaaaaaggaaCCTTCTCCAGAGGCGTCTGAGCTTGAGAAGCACAGATACAACGTCAGAACGCTCTTGCAGTGTTCAAATGCCACTCCGATTCGTACCCACTCCATCGCGACTGGATACTCCTGCTGTTTTTGCAAAGAGCATTTTTCCAAAGCGGCAGAACTTAAAATGCACACAATTCGGAACCACGACGATGGCACGAAAGGCAAATTTATGCATGGAACTACTCTATTCTCGTTTATCGTAAAACTCGACATAACATCCCTTACTTGCAACATTTGCAACATGGTTATCGACAACCTCGAACAACTCGTTGATCATCTCAACACTGTACACGATAAAAGACTCCACGCAGACGTTAAAAGCTACATAGCTTGCTTCAAGCTCGACGGTGAAGAAATGAAGTGCCATATTTGCTCTGCAGAGTACAAGAGCTTCAAGTTTCTGCTAGAACACATGAATAAACATTCTACAAACTTCGTCTGCGATGAATGCGGGGCAGGGTTTATAAATCTCGGCCAACTCAAGTATCATTcagataatatacatacagtgGGCGAATACAAATGCAACCATTGTGCCATCTTCAACACCTGCCAACTTGTTAAAATCGAGTTAACTGAAGTGCCAACGGTGGAAGTGCCACTGGTAAAAGTTGAAGCTGCAAATGATGAGCCTGCTCCAAGCATCCAAACCTGGGAAAGGCCAACAGAGCCAGCATCGTCTCAAACAGAGACAGATACAACGACTCAAAGACTATTAATAATACATCCTCCAGCTAAACGGAGAAAACGAACAATTCAAAGAATTAGAATAAAACCACCGACTGAACCGGCGCCTAtgagacaaataaaaataaagcccCCAacaactggaccaccagttCAACCAACTCGgcgaaaaataattaaaaatgaccCCCCGCTTctgaagaaagaaataaagataGAGCCTCCGTCCAGCATGCCGAAAAATTATGAGCTCGACAAACATCGTCATAACATCCGGACCATACTTAAATGTTCGAACGCCACACCTATCCGATGCCATTACATCGGCAGCGGATACGTCTGCTGCTTCTGCAAAGCAAGCTTCCTCAAAGCTGCGGATCTTAAGAGCCACACAATAAACGATCACGACGATGCCGTGAAAAGCAAATTTATGAAAGGCATCCACCTGTTTTCGTACATCGTTAAACTCGACATAACGTCATTGTACTGCAGCCTTTGCGATACGCCAGTCGACACCCTCGAGCAGCTGATGGATCATCTGAACGAAGCACATCAGAAAGGTCTCCATACAGACATCAAAAGTCACATAGCTTGCTTCAAGCTCGACGATGACGCGATGACTTGCCACATTTGTTCGACGAAGTATcaaagttttaaacttttattccTGCACATGAACCAACACTTCACGAATTTCATTTGCGCGGAATGCGGATCGGGCTTCATCAATCGGAACCAGCTCAAGAATCACTCAACTATACATAATGTTGGGGAATTCAAGTGTGAATCGTGTGACAAAGTGTTGAATTCGATGAAGAAGCTGAGGTGTCATATGCGCCAGACGCACACCGGTATATCTTTGTACAAGTGCCATCAATGCGATGAGAGGTTCAAAACTAAAAATGCTAAACACAACCATATCCAAGAAGCCCACGGTATAGTGCTAACGGAACTACAATGCGATGCCTGTGACCGCACCTTCAAAAACAACGACGCTCTTCGTACCCATAAGAAAAGGGACCATTTAATGGAAAGGCGTTTCGAATGCGATATATGCGGCCATAAATTCTTTGGATCAGGAACATTGAAGGATCACAAAGTGACTCACACTGGGCTACGTGACTTTAAGTGTGAGCTGTGTTCCAAGTCGTACTCCAGGCGAGATGGTTTAAGGGAACACATGAGGTCACACACTGACGACCGTAGATTCAAATGCACGTACTGTGGAATGGCGTTCTTGCAGAAGTGCAGCTTGAAAGGGCATTTGCGCAGTCGACACGATGCAGAATTAGAgtga
Protein Sequence
METKIATKSKANKNKKESSEPEKVQPLKIKPSAKAELLDVHKHRYNIRAILQYSNATPIRDHYAGNGYACCFCKQFFHKAAELKSHTIQTHDDQTKKKYMQKAFLSKLFVKLDITFLRCSICTLEMSNLDELIEHLNSVHQKGIHTDIKNQIMCFKLDDEGFRCFICSVEYHSFKYLLEHAHTHYRNFVCEMCDAGFINGTKLYAHLYNKHKGAGSHKCSACEKVFDTAVKLKTHKRIHSGPGLYKCHECGKKFPKRTEKRDHMISFHGVEFSQIKCTACERTFLSKDSLNVHINRDHLMDRRYQCELCGKSFFKSSLLRDHMVSHSLLREIQCSKCSKSFARKRALREHMKLHAKDKRFKCCYCIVISDVKPIKLEIEWDLERNMEVKTTRIKEEKMASKSRKREKGITSKRAANRNKNESEFKPLKIKPPAKAELLDVDKHRYNVRAILQYSNATPIRAHYAGNGYACCFCKQYFHKASELKSHTLQTHDDQTKRKYMQKAFLFKLFVKLDITFLRCSICTLEMLNLDELIDHLNSVHQKGIHTDVKNQIMCFKLDDDSFRCFICSVEYHSFKNLLEHAHTHYRNFVCDVCDAGFINRLKLYGHVYNKHKGAGSHKCGTCEKVFDTPIKLKTHERIHSGSVLYKCHECGEKFPKKKEKRDHMINVHGAKFAQIKCTACEKMFISKASLSVHINRDHLMDRRHQCELCEKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTYCDMAFLQKCSLKGHLRVDVSDHKAIKSEVENSWGVTIVKVKGPKADEDPTKTKSELKTSQSKRQSKKDFNKCNVTSLRKVKVGTSKILNNEQVTVDKMYSPDMVTNKALKLNKSLLRKGALKSSETPPSQRIIINPPPDLDFTKQIKTIKPGEAKVAKQKKIQPTKKETPKSNEPVQRIKIIPPPDMDFMMELDKHRFNIRTVMQNSNATPIRNHVKSGFVCCFCDAHFPRPGDLKLHTIQSHADDESKEKFFRKKAVLYSFMVKLDITSLTCNICHLSADTLDQLIEHLNSIHQKGLHTDIKNHIVCFKFDSEVMRCLVCLLEFNSFKLLSEHMNQHYTNFVCDECGAGFINRRQLLLHSDKHKVGAHKCGSCDKVFQSLKRMRTHERITHLYNSGLGVHTKDHKAIKKELDVSWEVTIVKLEDANDKSKARKIKLDEIPQRSKVKKKEPSPEASELEKHRYNVRTLLQCSNATPIRTHSIATGYSCCFCKEHFSKAAELKMHTIRNHDDGTKGKFMHGTTLFSFIVKLDITSLTCNICNMVIDNLEQLVDHLNTVHDKRLHADVKSYIACFKLDGEEMKCHICSAEYKSFKFLLEHMNKHSTNFVCDECGAGFINLGQLKYHSDNIHTVGEYKCNHCAIFNTCQLVKIELTEVPTVEVPLVKVEAANDEPAPSIQTWERPTEPASSQTETDTTTQRLLIIHPPAKRRKRTIQRIRIKPPTEPAPMRQIKIKPPTTGPPVQPTRRKIIKNDPPLLKKEIKIEPPSSMPKNYELDKHRHNIRTILKCSNATPIRCHYIGSGYVCCFCKASFLKAADLKSHTINDHDDAVKSKFMKGIHLFSYIVKLDITSLYCSLCDTPVDTLEQLMDHLNEAHQKGLHTDIKSHIACFKLDDDAMTCHICSTKYQSFKLLFLHMNQHFTNFICAECGSGFINRNQLKNHSTIHNVGEFKCESCDKVLNSMKKLRCHMRQTHTGISLYKCHQCDERFKTKNAKHNHIQEAHGIVLTELQCDACDRTFKNNDALRTHKKRDHLMERRFECDICGHKFFGSGTLKDHKVTHTGLRDFKCELCSKSYSRRDGLREHMRSHTDDRRFKCTYCGMAFLQKCSLKGHLRSRHDAELE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-