Sbip020485.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439469.1:4341269-4345771[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.7e-05 0.001 19.8 2.4 1 23 171 194 171 194 0.98 2 23 0.0071 0.42 11.5 2.0 2 21 197 216 196 218 0.95 3 23 3.9e-05 0.0023 18.6 3.4 1 23 232 255 232 255 0.94 4 23 2.2e-08 1.3e-06 28.8 1.0 1 23 261 284 261 284 0.97 5 23 0.013 0.77 10.7 3.7 1 23 290 312 290 313 0.95 6 23 0.037 2.2 9.3 2.5 1 23 327 350 327 350 0.93 7 23 2.2e-05 0.0013 19.4 3.1 1 23 356 379 356 379 0.95 8 23 0.00016 0.0096 16.7 0.1 1 23 385 407 385 407 0.97 9 23 0.00066 0.039 14.8 0.5 3 23 440 460 438 460 0.96 10 23 0.052 3.1 8.8 0.9 3 23 473 494 471 494 0.94 11 23 1.4e-06 8.5e-05 23.1 0.3 1 23 500 523 500 523 0.97 12 23 6e-06 0.00036 21.2 0.5 2 23 530 551 529 551 0.94 13 23 0.013 0.76 10.7 2.2 1 23 569 592 569 592 0.93 14 23 4.3e-06 0.00025 21.6 2.0 1 23 598 621 598 621 0.98 15 23 0.003 0.18 12.7 1.3 1 23 639 661 639 661 0.96 16 23 0.0075 0.45 11.4 2.4 1 23 667 690 667 690 0.91 17 23 0.0085 0.51 11.3 1.0 1 23 696 718 696 718 0.95 18 23 0.0075 0.44 11.4 0.2 2 23 725 746 724 746 0.94 19 23 8.1e-05 0.0048 17.6 3.0 1 23 752 774 752 774 0.98 20 23 2.3e-05 0.0014 19.4 0.5 3 23 782 802 780 802 0.98 21 23 9.3e-05 0.0055 17.4 2.6 1 23 808 831 808 831 0.92 22 23 0.00013 0.0077 17.0 5.0 1 23 837 859 837 859 0.98 23 23 9.2e-05 0.0055 17.4 2.1 1 23 865 888 865 888 0.97
Sequence Information
- Coding Sequence
- ATGCctgattccctgtgtcgagTTTGTCTTGTGGATAACTTGAAAATGCACAAAATTAGCAGCTCCTGTTACAAGGACATGTTGGAGAAACTAACTGGAGAGACGCTGTTGTCGGGGGACGGTGTGCCGGATGTTCTCTGCTTCCTCTGCCACTCACAAGTGCTCAAGATGTGGAGGTTCTTCCAAATATCTCTTAACTCGGAGAGGAATCTCCGGAAGCTGCTCGAATGTGGCGTTCAGGTATCACGACTGTCGGTGGCGCTCATAGAGAGGCCGGTCGTCCACAACCTGGCTCTGACAGCTGTCACTCAGACATTTGACTGCACGATGGTCGAGGGACTGAAGGAGGAAGTCACACCTGTCAAAGTCGAGACTTTTGACAAGAGTGAGCTACTCAATCTAGAAGATGAAGAAGCATATGAGGATGATGACTCGGAGAACGACCCGCTGGAGTCTGTCAAAGTTGTCACTGTCAAACTGGAGAACGAACCGAAGCTGTCAGTCACGGCTTACTCCTGTGACATCTGTCAGAGGCGTTTCAACTCCACCACAGAACTTAATAGGCACAAACGAACTTCACATAAGAAGAAATGCAGCATCTGCGGAGAGATTTTCTTAAGGTCCAGTGAATTGAAGTTGCATTTGAGATGTCACGATGAAAAGGATACTTTAATAGTTTCCACTGGAGAGAAATTTGCTTGTGTGCTGTGCAAAAAGTGTTTCACTCAGAAGGGACATCTTAAAACGCATATAATGGGGGTCCATAAGGGCGAGAGGCCATATGCTTGTGCTATATGCGATAAGCGATTTGTACAGAAGAGCAACTTACGAACACACATGAGAACAACGCATACCGTATCAAAGCCTTTCACTTGTAAAATGTGTGATGGGATCTGTACCGATGAGGAGCATTTGAAGGAGCATATAAGTGAGCATCACGGAGACAACATTGAGCAAGATAGTGCTGGAACAAAGCCATTTGCTTGTGGACGCTGTTGCAAAACGTTCACGGCCAAAGCACATTTGAAATCTCATATAATGGCAATACACACTGGAGAAAGGCCGTTCGCATGTACTATGTGCGATAAGAAATACACGCAGAAAAGTCATTTGAGACTCCATGCGAGATTAACTCATGTTGTGGAGAAGCCCTTCGCTTGTGATGAGTGTGAGATGAGATTCGACGAAGCGGACGCGCTGAGGAAGCACGCAAGAACTCATGCTGAAAACTCGCTCGCCTGTGATGAGAGTGAGATGAAATTTGGGGACGCGGACGCTTTGAGAATACACCTGGGAAGTCATGATAGAAGCCTGGCCTGTGATACGTGTGATAGAGTTTTCCTAACTGAGAATAGCTTAAAGAAACATATGTTGAGACATAGTGAAAGTGTTATAGTGAGAGATAAGCCGTTCGGTTGTGTGTTGTGTAGCAAACGATTTGGATGGAAATCTCATTTAAAATCTCACATAATGGCCATACATACAGGGGAAAGGCCGTACGCTTGCTCGATGTGCGACAAGAAGTTTGTACAGAGAAGTAACTTGAGACTTCATGCTAGAATAGCTCACTCCATAGTCAAATCTCTGACTTGCGATCCGTGTGGGAAGGAGTTTAGAAGCGAAAGTAACCTTAAAAAGCATATGGTGACTCACGGTGAAGACACAAGGGACTACATCGAGAATGAGAAAGATAAATCCAAACCATATGCCTGCGCTCATTGCAGTAAGAGATTTGGATGGAAATCTCATCTTAAAACGCATGTCATGGCATTACATACGGGGGAAAGGCCGTTTCCCTGCTCTATATGTGAGAAAAGATGCGTTACCAAAAGCAGCTTAAGATTGCATATGAAAACAGCCCACCCCGGTGAAAGAATCACTCAAAACATGATTAACATAGGCACTGGCCGGCCTTTCACCTGTAAAATATGCTCAATAAAGTTTGCATACAAAGCTAACTACGATAAACACAAGGAACTCCATACGGACTCTCCCCCTTTCATCTGCCTCAAATGCGATAGAAAATTCAACACGAAAAAAGACTTGGATTCCCACAACACAAGCTTTCATGCTTCCGAGCTCCCATTTACTTGTAAAACTTGTAATTCAAGGTTTGAAGATGAGAACGGCTTGAAGAAACATGAGGAATTACACGTAGACTCTAAGCCGTTGTCTTGTGAAGTTTGCAACCGAACTTTCTTGGTCAGAAGCGCTTTGAGACGCCATGAAGCTATCCACAGCGATGAGAAACCGTTTTCATGTAAACTTTGCAAGAAAACATTCAAGCAAGATCGAGTTTTACGCAAACACATGCAAATACATACAGAGGAAAAGAAGTTTGGATGTGACTTGTGCGAGAGGAAATTCTACCAGCGTGGAAACTTAATAAGTCATATGAGGATCCACTCCGGGGAGAAACCGTTTGTCTGTGATCGTTGCGGGAACAGCTTTAACCAGAAAAGTCACTTAAAAACACATGTCCTGTTCATGCATTCGTCCGAGAAGCCATTTTCGTGTTCGCTGTGTAACAAGAGGTTTAGGCTTAAGAGTTGTCTGAGGAATCATCAGATGGTCCACACGGGGGAGCGGCCATATAGATGTGATAAGTGTGATAAGAAGTACTATAAGAAGGGGGAGTTAAAATCGCATGTATTGAAAATGCACTCTTAA
- Protein Sequence
- MPDSLCRVCLVDNLKMHKISSSCYKDMLEKLTGETLLSGDGVPDVLCFLCHSQVLKMWRFFQISLNSERNLRKLLECGVQVSRLSVALIERPVVHNLALTAVTQTFDCTMVEGLKEEVTPVKVETFDKSELLNLEDEEAYEDDDSENDPLESVKVVTVKLENEPKLSVTAYSCDICQRRFNSTTELNRHKRTSHKKKCSICGEIFLRSSELKLHLRCHDEKDTLIVSTGEKFACVLCKKCFTQKGHLKTHIMGVHKGERPYACAICDKRFVQKSNLRTHMRTTHTVSKPFTCKMCDGICTDEEHLKEHISEHHGDNIEQDSAGTKPFACGRCCKTFTAKAHLKSHIMAIHTGERPFACTMCDKKYTQKSHLRLHARLTHVVEKPFACDECEMRFDEADALRKHARTHAENSLACDESEMKFGDADALRIHLGSHDRSLACDTCDRVFLTENSLKKHMLRHSESVIVRDKPFGCVLCSKRFGWKSHLKSHIMAIHTGERPYACSMCDKKFVQRSNLRLHARIAHSIVKSLTCDPCGKEFRSESNLKKHMVTHGEDTRDYIENEKDKSKPYACAHCSKRFGWKSHLKTHVMALHTGERPFPCSICEKRCVTKSSLRLHMKTAHPGERITQNMINIGTGRPFTCKICSIKFAYKANYDKHKELHTDSPPFICLKCDRKFNTKKDLDSHNTSFHASELPFTCKTCNSRFEDENGLKKHEELHVDSKPLSCEVCNRTFLVRSALRRHEAIHSDEKPFSCKLCKKTFKQDRVLRKHMQIHTEEKKFGCDLCERKFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLKTHVLFMHSSEKPFSCSLCNKRFRLKSCLRNHQMVHTGERPYRCDKCDKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -