Sbip018545.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scotopteryx bipunctaria
Gene Symbol
-
Assembly
GCA_949320045.1
Location
OX439465.1:6676107-6687543[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.0001 0.0059 17.3 1.0 1 23 376 398 376 398 0.98
2 24 3.9e-06 0.00023 21.8 0.8 3 23 406 426 404 426 0.98
3 24 3.4e-07 2e-05 25.1 1.1 1 23 432 454 432 454 0.98
4 24 8.6e-06 0.00051 20.7 0.5 1 23 460 482 460 482 0.98
5 24 7.3e-06 0.00044 20.9 2.8 2 23 496 517 493 517 0.94
6 24 1.5e-05 0.00088 20.0 7.0 1 23 523 545 523 545 0.98
7 24 2.6e-06 0.00015 22.3 0.3 1 23 551 573 551 573 0.98
8 24 1.6e-05 0.00095 19.8 0.3 1 23 579 601 579 601 0.98
9 24 0.00038 0.023 15.5 1.0 1 23 607 629 607 629 0.95
10 24 3.9e-06 0.00023 21.8 2.4 1 23 635 657 635 657 0.99
11 24 2.4e-08 1.4e-06 28.7 0.7 1 23 669 691 669 691 0.99
12 24 1.9e-05 0.0011 19.6 3.9 1 23 697 719 697 719 0.97
13 24 0.00088 0.052 14.4 0.3 1 23 724 747 724 747 0.96
14 24 1.5e-05 0.0009 19.9 3.5 1 23 753 775 753 775 0.97
15 24 4.5e-06 0.00027 21.6 1.5 1 23 781 803 781 803 0.98
16 24 4.6e-06 0.00027 21.5 1.2 1 23 809 831 809 831 0.98
17 24 4.5e-05 0.0027 18.4 0.8 1 23 837 859 837 859 0.97
18 24 1.7e-05 0.001 19.8 5.4 2 23 872 893 869 893 0.92
19 24 0.00028 0.017 15.9 2.9 1 21 899 919 899 921 0.95
20 24 2.5e-05 0.0015 19.2 0.1 1 23 927 949 927 949 0.98
21 24 1.1e-05 0.00067 20.3 0.5 1 23 955 977 955 977 0.98
22 24 6.8e-05 0.0041 17.9 0.3 3 23 985 1005 983 1005 0.97
23 24 7e-06 0.00042 21.0 0.8 1 23 1011 1033 1011 1033 0.98
24 24 0.00033 0.019 15.7 0.4 1 23 1039 1061 1039 1061 0.98

Sequence Information

Coding Sequence
ATGTACAGTCGAGCGAGCACACACGTCCGGTCCGAGGCTGGAGTTACCGGCAAGTTCGATGTGGCTGTAGGTTTGCACCAGGGATCGGCTTTAAGCCCTTATCTGTTCCTCCTGGTAATGGATGCTCTGACATCAGACATACAGGAGGAGGCACCCTGGTGCatgctgttcgccgacgacatCGTGCTTGTCGGAGAAGATGCGCTTGAGGTCCAGAGCAGGCTGGGAAAATGGCGGGAGAGACTGGAAAATGTCGGCTTAAGGATTAGTAGGACCAAAACTGAACATCTGTTCTGTGACTTCGGTGGTCCTTCTAGTTTCTCCCCTATAGCCTTAGATGGTGTATTCCTGCCAGTCTGCTCCGATTTTCGGTACCTCGGCTCATCAATCCAAAACGACGGCGAGATCGATCGGGACGTTAAAAACAGAATGaatgcgggatggatgaaatggcgacaGGTCTCAGGAACAACATGTGATCGGCGAATGCCCCTTAAACTTATGGGGAAAATCTACAAAACGATCATAAGACCTGTCGcactgtatggatctgagtgttgggcaaccaaagcgGCGGATGAAAGAAAAGTGCATGCTACGGAGATGCGAAtgctgagatggatGGTGTGTTTACTTGGCAATGTTAGAATGCAATATATTCAAAGCCCTGAACTACGAGAGCTGTTTGAGTTGCTTGCGAATAATAAGCTGAGTACAGAAGATGGAAGACCAGAAACAATCTGCTTTATTTGCTACTCCCATTTGCTTAGATGTTACAAGTTCATGCAGACATCTCGGAAAGCTGAGAATATCCTTACACAACTGTTTTGTAACGGCTTAAAGATAACTCAAGAGATTGTATCTATATTAAATGGAGGTGAACCACTTATATTCTTGGCTACACAGCCCACatcctactacaactacttgTTTGACCAGAGTACTGCGGAGTACAGTTTGACAGGTGTCAAACTAGAGTCTGTGGAGGCGTATCCGATCCAATTTGAAGAGGATTACTGTCACGATGATGTGAAGTTGGATTTGGATGATTTTTGTGCAGAAGTTGATGAGGAGAACAATCAGTTGAAAAGACACATTAGTAGAATGCATGCTGCTTTAAAACCCTACGCTTGTGAATACTGTGATAAGAAATTCTATGAAAACAACAGGTTGCAAAGCCACATCAAGATACACACAGGGGAGAGGCCATTTGGCTGTGATGAATGTAAAAAGAGTTTCTCGGACAAACGCAGCCTGATTGTTCACTTGAGGAGTCACACAGGTGAAAAACCATATTCCTGTGAAGTTTGTGACAAGAAGTTCATCACTAACAACACTTTGAGAAACCATATGCGGATTCATACAGAAAATAAGAGTTTCCCTTGTGACAGATGTGATAAATCCTTTTCCGTGATAGATTACTTGAAAAGCCACATGAAAATCCACTCGGAAGCGAGAAGCAGACCTGATTCCGCTTACTCGTGCGCTTGCGACCGTTGCGGGAAAACTTTCTTTGATAAAAGcgttttaaaaaaacacatgaGAATCCATACTGGTGAAAAACCATTTGTGTGTGATATGTGCCATAGGACATTCACTGAAAAATGTAACTTAAAACGGCACTTACGAACCCACACAGAGGAAAGACCTTACGCTTGTGACATGTGCGACAAATCGTTTGCTGAAAGTGGGAATTTAAAGACCCATAAAAGAGTTCATACGGGGGAGAAACCATATTCCTGTGACGCGTGCGGGAAAGGATTCGCCCAGGCGAATTCTTTGAAGAAACATCTGACCACCCATACTGGAGAAAGACAGTTTTCTTGTATCATATGCTATAAAACCTTCACAGCAAAGAATAGCTTGAAAATTCACATGAGGATTCATAGCGGGGAGAAACCTTACTCATGTGATGTTTGTAATAAGACGTTCTACGAGAGCAGCTCTTTGAGTCGACATAAGAGAACGCATACGGGGGAGAATCCATACACTTGGGATGGACCTTATGTGTGCAGCATGTGCAGTAAATCATTTACTGATAACAGTGATTTGATAAAACACATGAGAATACACACTAGAGAAAAAGCATTTGCCTGTACTATCTGTGATAAGAAATTTCACGACAAATATAAACTGAATAATCACATGAAACTCCATGAAACGGAAGATTTCAGCTGTGATATGTGCGATGAGATATTTACCGAAAACCAACAGTTGGAAACGCACAGTAGTACAGTCCATGCGGGATTGAAGCCGTTTGCTTGCGAAATGTGCCATAAAAGATTTGCTTTTAAATCGAAATTAGACAGGCACATTCGAACCCACACAGAGGAGCGGCCGTACGCTTGCGACATGTGCCACAAAACATTCGCCGAAAGCGGCAATTTGAAGACTCACAGAAGAGTTCACACCGGAGAAAAACCATTTTCCTGCGAAATATGCCAGAAGCAATTCACAACAAACAACACCTTAAAAATACACATGTCGATACATTCAGGAGAGAAACAATTCGCTTGTGGCAAATGCGACAAATCATTCACCGCTATAGATTACTTGAAGCGTCACAGGAAAATCCACACAGAAAAGGACCAGTCCGACCCCACATTCACCTGTACCTGTGATCGGTGTGGCAAAACGTTTGTTGATAAATGTGCGTTGAGGAAACACATGAAAATACATACGGGAGAAAAACTTTTCGTGTGCGACATGTGTGATAAAAGATTCGCCGCAAAGTCCAAACTGAAAAGGCATGTTCGATGTCACACAGAGGAAAGGCCTTATGCTTGTAATCTGTGCGAGAAGGCGTTTGCTGAGACTGGAAGTTTGAAGACCCACATGAGAGTTCATACAGGGGAAAAACCATATTCCTGTGACGCGTGCGGAAAAGGATTCGCGCAGTCAAACTCATTGAAGAAGCACTTGACCACTCACACAGGGGAAAGGCAGTACGGCTGCGTCGTTTGCTTCAAAAGCTTCGCAGTAAAGAACAATTTAACAGACCACATGAGGATCCATAGCGGGGAGAAGCCATACATTTGCAGTATTTGCAACAGGGGCTTCGCTCAATCCAATTCGTTGAAGAAACATCTCACGACACACACTGGTGAAAAACAGTTCTCCTGCGTGATTTGCTACAAATCTTTTGCGGCTAAAAATACCTGGAAGATCCACATGAGGGTTCACAGCGGGGAGAAGCCCTACGCTTgtgatcaggccatcaagttggagaggatactaggcactccttag
Protein Sequence
MYSRASTHVRSEAGVTGKFDVAVGLHQGSALSPYLFLLVMDALTSDIQEEAPWCMLFADDIVLVGEDALEVQSRLGKWRERLENVGLRISRTKTEHLFCDFGGPSSFSPIALDGVFLPVCSDFRYLGSSIQNDGEIDRDVKNRMNAGWMKWRQVSGTTCDRRMPLKLMGKIYKTIIRPVALYGSECWATKAADERKVHATEMRMLRWMVCLLGNVRMQYIQSPELRELFELLANNKLSTEDGRPETICFICYSHLLRCYKFMQTSRKAENILTQLFCNGLKITQEIVSILNGGEPLIFLATQPTSYYNYLFDQSTAEYSLTGVKLESVEAYPIQFEEDYCHDDVKLDLDDFCAEVDEENNQLKRHISRMHAALKPYACEYCDKKFYENNRLQSHIKIHTGERPFGCDECKKSFSDKRSLIVHLRSHTGEKPYSCEVCDKKFITNNTLRNHMRIHTENKSFPCDRCDKSFSVIDYLKSHMKIHSEARSRPDSAYSCACDRCGKTFFDKSVLKKHMRIHTGEKPFVCDMCHRTFTEKCNLKRHLRTHTEERPYACDMCDKSFAESGNLKTHKRVHTGEKPYSCDACGKGFAQANSLKKHLTTHTGERQFSCIICYKTFTAKNSLKIHMRIHSGEKPYSCDVCNKTFYESSSLSRHKRTHTGENPYTWDGPYVCSMCSKSFTDNSDLIKHMRIHTREKAFACTICDKKFHDKYKLNNHMKLHETEDFSCDMCDEIFTENQQLETHSSTVHAGLKPFACEMCHKRFAFKSKLDRHIRTHTEERPYACDMCHKTFAESGNLKTHRRVHTGEKPFSCEICQKQFTTNNTLKIHMSIHSGEKQFACGKCDKSFTAIDYLKRHRKIHTEKDQSDPTFTCTCDRCGKTFVDKCALRKHMKIHTGEKLFVCDMCDKRFAAKSKLKRHVRCHTEERPYACNLCEKAFAETGSLKTHMRVHTGEKPYSCDACGKGFAQSNSLKKHLTTHTGERQYGCVVCFKSFAVKNNLTDHMRIHSGEKPYICSICNRGFAQSNSLKKHLTTHTGEKQFSCVICYKSFAAKNTWKIHMRVHSGEKPYACDQAIKLERILGTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-