Sbip020541.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439470.1:179290-186579[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-05 0.0081 16.2 0.0 7 35 47 74 43 79 0.88 2 2 0.036 24 5.1 0.0 7 34 291 317 288 328 0.84
Sequence Information
- Coding Sequence
- ATGGACCACCACGGTGTGCCGCTCAATATCCACGCGCGACCGCGCATCGTCGGCCGAAGACCCAACGCCATCGTCAACATCGAAACAGACGTGTTCCAAGAGAAATCCTACAAGCAATACTCCTCCCAACACCTCCGTGATGCACTAATAGCAGTGAAGAAAGGTTACAGTGTCTACGCGGCTTCGAACAAATATGGCGTCCCGAGAAAAACTTTGCGTAATTGGATGGAGAAGTACGACATAAAGAGTCAGTTCTCGAAGGGACGCCGCGGCACGCGGACGTCTACGCAGATATTGGATCCGCTGAATTTGCTCGCTGAAGCTAGAGGGGAGAGGTTTGAAGACTGGGCGATATCCAACGTGCAATGCCAATACGACAGCGGATCAGAGACGGATGCAGGCGCCGAGTCGCGCGAGGAGATGTTACAACTGGCGCGAGGAGTCTCGACGCCGCGCGAGGAAATGTTACATTTAGCGCGAGCAGCGTCGACGCCGCGCGAGGAAATGTTACATTTAGCGCGAGCAGCGTCGACGCCACGCGAGGAAATGTTACATTTGGAGCGAGCAATTTCGGCGCAGCGCGAGGAGATGTTACATTTGGAGCGAGCAGTGACGGCGCAGCGCGAGGAGCTCAGCGACGACCACACGTACGGTGCGAGGAGCTACGAGCCTCCCGCCTTTGTTATACGACAGAGCCAGGTCCCATTGCAGCTGTCGGGCTTCTCCGAGATGCGGCCGAAGATCATGACGCTGGGGCCGGGCTTCCAGGCGCTGAATGTAATCCACGTGGGAGATCAGCCGCCGCCCAGCTCGGCTGCGCCAGAGTTGAGCATAAACAAACGCATCCGGCGCAGCGAGGTGGTGCTGCGCCAGGCCGCCGACTGCGTGAGCCGCGGGCTCACCTTCCAGACCGTCTCCGAGCAGTTCAACATCCCTATCTCCACTATACGtTTCTTCATGGCGAGGAAGGGCATCTTGCCCAGGCGAAGACGAGGTCGAACCACACAGGCGCCGCCATCAATAAGTCCGGAGCCGCCGTACCACATCCAGCACTTCAAACTGCCACCCATGGCGGGGCTGCGCGCCGACGACGAGGGCAATGACCCAGAGGCCAAGGAGACCAGCAAAGAACAATTGTAA
- Protein Sequence
- MDHHGVPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRRGTRTSTQILDPLNLLAEARGERFEDWAISNVQCQYDSGSETDAGAESREEMLQLARGVSTPREEMLHLARAASTPREEMLHLARAASTPREEMLHLERAISAQREEMLHLERAVTAQREELSDDHTYGARSYEPPAFVIRQSQVPLQLSGFSEMRPKIMTLGPGFQALNVIHVGDQPPPSSAAPELSINKRIRRSEVVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRTTQAPPSISPEPPYHIQHFKLPPMAGLRADDEGNDPEAKETSKEQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -