Basic Information

Insect: Scoparia ambigualis
Gene Symbol: ush
Assembly: GCA_963921215.1
Location: OY992505.1:34866192-34869559[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0062 1.5 11.7 0.1 1 20 147 166 147 168 0.94

2 9 0.0001 0.026 17.3 0.9 1 23 206 228 206 228 0.98

3 9 0.027 6.6 9.7 0.6 2 20 258 276 258 278 0.93

4 9 0.023 5.7 9.9 3.9 2 21 518 537 517 538 0.95

5 9 0.0081 2 11.3 0.2 3 20 567 584 565 586 0.91

6 9 5 1.2e+03 2.5 0.0 2 23 614 635 613 635 0.93

7 9 0.01 2.5 11.0 1.3 1 23 641 663 641 663 0.99

8 9 0.42 1e+02 5.9 0.6 1 23 702 725 702 725 0.95

9 9 0.22 54 6.8 0.7 2 20 760 778 760 780 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0062	1.5	11.7	0.1	1	20	147	166	147	168	0.94
2	9	0.0001	0.026	17.3	0.9	1	23	206	228	206	228	0.98
3	9	0.027	6.6	9.7	0.6	2	20	258	276	258	278	0.93
4	9	0.023	5.7	9.9	3.9	2	21	518	537	517	538	0.95
5	9	0.0081	2	11.3	0.2	3	20	567	584	565	586	0.91
6	9	5	1.2e+03	2.5	0.0	2	23	614	635	613	635	0.93
7	9	0.01	2.5	11.0	1.3	1	23	641	663	641	663	0.99
8	9	0.42	1e+02	5.9	0.6	1	23	702	725	702	725	0.95
9	9	0.22	54	6.8	0.7	2	20	760	778	760	780	0.92

Sequence Information

Coding Sequence: ATGGCGGGCGGCGCAAGCGCACCAATCGTCGCGTCCATCGCGCTGTCGTGCCCATATAATGATCTTCACAGGAGCAGGAGAATGAAGTTGAGCCTCTCATTAATTGGCGTTTTGAGTCGAGATCGTGAAGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCTGTAGAACCGCGCACACCGAGCTCTGGGGGTGAGCGGGCGGCGTCCAGCGGGGGGGCCTCGCCGGCCTCGGGGGGCTCGCCCGAAGCGTCGCCGCCGCGGCTGCGCCTCAACACCAGCCTCGCTACCGACCCTGCGCTGGCGCCGTCAGCTGCACCTCTCAAACTAGAACCTCCTTCGCCGTCGCCGCCGCAACCGCCTTTACCGCAAACGAGGGACTTCCTCGCTTTGTCTGCTACATTCCCGGCACTGTTCCCAGCAGCAACCGCCCCGGGATACGTGTGCACGCCCTGCGGCATTCGCTATTCTTCACTGAGTACACTGCAAGCGCACCAAGAACATTACTGTTCTAACAGAAGGCCGAAAACGGCGGAAGGATCTGACACGCCAGCGGACGCTGCGGCGGATGAGTCCAGTAGCGACGCAAAAACTCCCCGCCCGCCGGGAAAGCAATATGCTTGCACTTATTGCTCGTACAGCGCGGACAAGAAAGTTAGTTTGAATCGTCACATGCGCATGCATGCATCGTCGCCAGTGAGCAGCGGGACGCCGGCGCCTACGCCGACGCCCAACGGCGAAGTCACTGAGGGTCCGCCGCAACAGGACCGTTACTGTACCGACTGCGACATACGTTTCAGCTCAATCAAAACGTATAGAGCGCATAAAGCGCACTATTGTAGTACTAGACAAGTAGTAAAGCAAGCGCTGGCCGCGGTGAGAGCTGGATCAGCCACCTCAGGCTCGGCTCCGCCGTCCCCAGGCGCGACGCCACCAGCTCAAGCACAATATGCCCTCGCGTTGCCGACAAATCCAATCCTCATAGTTCCATACTCGATACTACGGAGCGCCAGCACGCTTCCTGGAACTACTTTGCCCGATCCCGACACGCCCTGTTTTTTGTTACCAAATGGAACATTCCAGCCTCTTAGCCGCGCTTTACCAAACATGAATAACGATGGAAAGGAAACGGAAGTTCTCAAATCTGCAAACAGGCCTCGGGAGCCATCCAGGGACGGTGCCACACCACTGGATTTGAGCGTGCGTCGTACACCAGAATCCGTCACTACGGATGAACACGAAAAAGAAAATAGGATACGGTCGACAACTCCCGAACAGATAGTATGTGCGCCATCGCTGCCAGGGTCGCCGGGCACACCATCTCCTTCGCGGAGGTCCTCGTCTCCAAGTGCGGAGAGTTCACCAAAAAGACGGCGGCGGAACTCCCGAGGTCCTACGCCAAAACCGCCAAGCGCACCATCACCGCCCGAAGAGAAATTCACTCCGGCAGTGCCACCTCCCATGATCACTTCCGCTCTGGCGTTACGACTGGCGAGCGAACTGCCCATCACAGCAGCTTCACCCCAAGTGTTAGTCAAGCAAGGCGTTTCTAAATGCAAAGAGTGCAACATCGTTTTCTGTAAATACGAGAACTACCGCATCCACAAAAGGCATTACTGTTCAGCCGGTGGGGGTGACGAAAGGGCCAGTCCCGCGCCTCCGGAGCCCGGTCCGCCGCCGCAGTACCGGCAACTAATTTGCTTAGCGTGTGGAATTCACTTTAGTTCGCTAGATAATTTGACTACTCACCAGTCATTTTACTGTACGAAGAGGGAGACTCGGTCGCCTCGGAGCGTGCCAGAGGTGGCGCGGCCCTCGCCCGGCGCGGAGGGCGGATGGAAGTGCCCGTGCTGCGAGGTGGTGTCGCCGACGGCCGCGGCGGCGCAGCGCCACATGGAGGCGCACGCGGGCGTGAAAGCCTTCCGCTGCACCATCTGCCGGTACAGAGGCAACACCCTCAGGGGAATGCGCACGCATATAAGGATGCACTTCAACAATAAGAAACCTGCAGATTTACAGGAGGAGAGCTACATAGCTTGCGTGCTTGAGGAAGACAGCCGAGAGGCGACTTCTCCGAGCCCAGTGGCGGGCGGCGAGCGGGTGCACCGCTGCGGCAGCTGTGCGTACACATCCACGTACCGCGGCAACGTGGCCCGGCACGCGCGCCTGGTGCACGCCGCAGACGACCCTGAACCAGACCAGACAGAGCAGACCTCCCCCATCCCCACCGTCGACATCAAAAAGGAACCAGGCACGGAGACCGAGGAGACACCCAACTACTGCAAGTCTTGCGATATTTCCTTTAAATATGTGAACACTTATAAGGCCCACAAGCAGTTCTACTGCACCGCTAACAACCAGGACGCGGCCGCTAACAACAATGTTCCGCCACCGCCCGTCAGGGTCACCGATACCCCCGTATGA
Protein Sequence: MAGGASAPIVASIALSCPYNDLHRSRRMKLSLSLIGVLSRDREDEEWGNESEAMPVEPRTPSSGGERAASSGGASPASGGSPEASPPRLRLNTSLATDPALAPSAAPLKLEPPSPSPPQPPLPQTRDFLALSATFPALFPAATAPGYVCTPCGIRYSSLSTLQAHQEHYCSNRRPKTAEGSDTPADAAADESSSDAKTPRPPGKQYACTYCSYSADKKVSLNRHMRMHASSPVSSGTPAPTPTPNGEVTEGPPQQDRYCTDCDIRFSSIKTYRAHKAHYCSTRQVVKQALAAVRAGSATSGSAPPSPGATPPAQAQYALALPTNPILIVPYSILRSASTLPGTTLPDPDTPCFLLPNGTFQPLSRALPNMNNDGKETEVLKSANRPREPSRDGATPLDLSVRRTPESVTTDEHEKENRIRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSAESSPKRRRRNSRGPTPKPPSAPSPPEEKFTPAVPPPMITSALALRLASELPITAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGGDERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKRETRSPRSVPEVARPSPGAEGGWKCPCCEVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREATSPSPVAGGERVHRCGSCAYTSTYRGNVARHARLVHAADDPEPDQTEQTSPIPTVDIKKEPGTETEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDAAANNNVPPPPVRVTDTPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00006662;
80% Identity: -