Basic Information

Insect: Scoparia ambigualis
Gene Symbol: rst2
Assembly: GCA_963921215.1
Location: OY992523.1:27547414-27561818[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.5 3.6e+02 4.2 0.0 3 23 122 142 120 142 0.94

2 7 0.0018 0.44 13.4 2.8 1 23 258 280 258 280 0.99

3 7 1.5e-05 0.0038 19.9 0.4 1 23 286 309 286 309 0.97

4 7 0.065 16 8.5 5.8 1 23 314 337 314 337 0.93

5 7 7.3e-07 0.00018 24.0 1.0 2 23 510 531 509 531 0.97

6 7 0.00022 0.054 16.2 3.3 1 23 537 559 537 559 0.98

7 7 4.6 1.1e+03 2.6 0.5 1 10 616 625 616 632 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.5	3.6e+02	4.2	0.0	3	23	122	142	120	142	0.94
2	7	0.0018	0.44	13.4	2.8	1	23	258	280	258	280	0.99
3	7	1.5e-05	0.0038	19.9	0.4	1	23	286	309	286	309	0.97
4	7	0.065	16	8.5	5.8	1	23	314	337	314	337	0.93
5	7	7.3e-07	0.00018	24.0	1.0	2	23	510	531	509	531	0.97
6	7	0.00022	0.054	16.2	3.3	1	23	537	559	537	559	0.98
7	7	4.6	1.1e+03	2.6	0.5	1	10	616	625	616	632	0.83

Sequence Information

Coding Sequence: ATGAACCAAATGTCCACAGAAATGGACCCGTTGAGTAGTTACGAGTACTCTCCTTACGAAGGGTACCACCCTCCCCATATCCCCCCTGTGCCTAACTGCAACTACGATGTTAAGTTAGAACAACCACCACAGGAATTCTATAACATCTTTAATGCACTTCAACAAGAGTTAAATCAATCCGAGAAAGTGTTAACGAACTTTAACAACAAAACATGTGACGCAAAGCTAGTGGCACCAGTGACTCCCCAAATACCGAAGTTGTTCTACAAACTAGAGGATGAAAGAACTAAGAAGAAATTGAAAGGCAGAAAAAGCAAATACTGGTCAGAGAAAATCAACGATGACAACTTCAAGTTTTATGGTTGTGCAGTGTGCAACATCAGTTTTCCGGCTTTACCCGAATTGGATCAACATGTGACCGTTCACAAAGACAGGTTGACGAGTTACGATTTGAAAATAAAGAATCTTATCAAGAGGAAAAAGCTGAAgaaggaaaagaaaaaaatgaaaaagaacGGCAAGAAAGCAATTAAAACTGAAGACGTGCCACCGGAGATTGAAATTAAACCAGAGGACGGCTATATTGGCAACGAGAAAGCTTCTGAGTTCAACGTGGGTTTTCTTAATCAGAACAACGAGAACTTACCTTCTAATAAGGAAGAGCAGAAAGATGTGAAACCTGTACTCAATGGTTGCAACGATAATGTTAACGGGGATGCTAGTAAAAGTCCGGACACTGATAAACAGTCAATGTTGAATTTGCAAAAGATTTATAAATGTTTTGCCTGTCAAAAGCAATTCACTTTAAGTTACTACTTGAAACTGCATGTTCGGTCACATACAGATGAGAAACCATACACTTGTTCGATATGTGGACAGTCCTTTATAACCGCCAGCAAGTTGGGTAGACACAACAAGAGAATCCATCTTGCCATAAGACACCAGTGTAGGATATGCTACAGATTTTTCTCAAAATTTGAAAATCTCACCACGCATTTTGATAAAAAGCATCCCGATGACAAATTGGAAGGAGAGCCGTATGATTACAACGCCATCTTGCCGTACCTGAAAGAGTTGGAAGAAGAATTGAGAGAGAAAGCGGAACAgagtgagagagagagaaaagCGAAGGCGGGAGAATCGTGGGAGTTGTGGGAGAACCAACCGGGCCAGGAAAAAGAGGTATTACCAAAGGAGGAAGTTTCCAACCCTCAGGTACTGGTCAGCATTGAAGAGGTAAAGGTAGACCCACCAGATGTGGAGATTAAGAACGAACCGGATGACGAGGACACAGGAGACTTAGGGAACTCAGGCGACTTAGGAGACTTTGGGGACTCGGCGGATATGGGAGAATTGGGAGACGCGACTGAGGAACCGGTCAAATCGGAGGATGAGAAGGAAGACAGTGTTAAGGATGAAAGaTCCGATGACGACTATTTCCCTTCAAACACGTGGGCCGTCTCCCCCAAAATAGAGGAGCCCCCTCCCTCCCCCAAAACGAGGGGGAGCAAGGCCGTTGGCCCCCTCAAGTGTACTATATGCCAGAAGACTTTGAGCACAGCCTCCTATTTGAGGATCCATATGAGAACTCACACGGGAGAGAAACCGTTCAAATGTTACATATGCAATAGGGGTTTCATAACTTCAAGCAAGATGCATAGACATGTTCTGACACACGAAGAGTCATGGGAAGGTGACGAAGCTCCCCTCAAACAGGAAGGCATCAAATCGGATCCCGATGGCGGCGAGGACAGAAAGGCCACCAAAGCTATAATAAAGAAAGCTAAGGCGAAATTCAACAAGAAATCCAAATCTTCGGAGAAGAAAAAATACAAGACGCGGCCTCACTCGTGCGAGTTCTGTCAAAAGAAGTTTCTACATTTGGAGACTTTGCAGTTAAAGGCCGACTTTACTAAAACCACAGACTTCTTAGCCGCCGAGCAATCGGATTTAAAGTTACGTCTAAATAAAAAAGACCAAGAAATAAATGAACTGCGCAACAATTCATCACAGTTACAAAACGAACTAAAATCGCTTGGCAGCCGTCTGTCCACCCTTGAGAAGCTTTCACGAGGTAATAATTTGGAGATCCACGGAGTACAGGAAGCCCGAACCGAAAATTTAATTCAACTACTTAAGAATCTCTGTCAATCAATCAATACACCAATTTCGGATGTAGATATTAGGGTTTGTCGCAGAGTTGCCAAGATGGATCCCGCTTCGAAGAGACCCCGTAACGTGCTTGTGTCGCTGTCATCTCCGCGGCTTCGAGATAATATATTGGAAGCTGTTGCTAAGTTAAATAGAACCCAAAATGACAAACTCAACTCCGCTCATCTAGGAATTCAGGGAGCTACCAATAAAGTATATGTATCCGAACATACCTCCTTCGAATGTAAAAAGCTTTTTAAAGAAGCAAGAAGAATTGGAAGAGAAAGAGGATTTAGATTCATTTGGGTGAAAAGGGGCCTAGTGTACGTACGCAAAACCGAAGATGATATGGCTATACTAATAAGATCTGAAGACTAG
Protein Sequence: MNQMSTEMDPLSSYEYSPYEGYHPPHIPPVPNCNYDVKLEQPPQEFYNIFNALQQELNQSEKVLTNFNNKTCDAKLVAPVTPQIPKLFYKLEDERTKKKLKGRKSKYWSEKINDDNFKFYGCAVCNISFPALPELDQHVTVHKDRLTSYDLKIKNLIKRKKLKKEKKKMKKNGKKAIKTEDVPPEIEIKPEDGYIGNEKASEFNVGFLNQNNENLPSNKEEQKDVKPVLNGCNDNVNGDASKSPDTDKQSMLNLQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCSICGQSFITASKLGRHNKRIHLAIRHQCRICYRFFSKFENLTTHFDKKHPDDKLEGEPYDYNAILPYLKELEEELREKAEQSERERKAKAGESWELWENQPGQEKEVLPKEEVSNPQVLVSIEEVKVDPPDVEIKNEPDDEDTGDLGNSGDLGDFGDSADMGELGDATEEPVKSEDEKEDSVKDERSDDDYFPSNTWAVSPKIEEPPPSPKTRGSKAVGPLKCTICQKTLSTASYLRIHMRTHTGEKPFKCYICNRGFITSSKMHRHVLTHEESWEGDEAPLKQEGIKSDPDGGEDRKATKAIIKKAKAKFNKKSKSSEKKKYKTRPHSCEFCQKKFLHLETLQLKADFTKTTDFLAAEQSDLKLRLNKKDQEINELRNNSSQLQNELKSLGSRLSTLEKLSRGNNLEIHGVQEARTENLIQLLKNLCQSINTPISDVDIRVCRRVAKMDPASKRPRNVLVSLSSPRLRDNILEAVAKLNRTQNDKLNSAHLGIQGATNKVYVSEHTSFECKKLFKEARRIGRERGFRFIWVKRGLVYVRKTEDDMAILIRSED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -