Basic Information

Insect: Scoparia ambigualis
Gene Symbol: RREB1
Assembly: GCA_963921215.1
Location: OY992514.1:15553939-15561520[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.048 12 8.9 0.8 1 23 80 103 80 103 0.96

2 11 0.023 5.7 9.9 0.1 1 23 286 308 286 308 0.97

3 11 0.0012 0.3 13.9 0.4 1 23 317 339 317 339 0.99

4 11 0.00077 0.19 14.5 2.0 1 23 345 368 345 368 0.97

5 11 0.0031 0.76 12.6 1.6 1 23 717 740 717 740 0.96

6 11 0.00026 0.064 16.0 1.3 2 23 937 958 936 958 0.97

7 11 0.027 6.5 9.7 5.3 1 23 964 987 964 987 0.97

8 11 0.26 63 6.6 1.0 1 23 1020 1044 1020 1044 0.88

9 11 0.35 85 6.2 0.4 1 23 1067 1090 1067 1090 0.83

10 11 0.0019 0.47 13.3 0.2 2 23 1130 1151 1129 1151 0.96

11 11 0.03 7.2 9.5 5.3 1 23 1157 1179 1157 1179 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.048	12	8.9	0.8	1	23	80	103	80	103	0.96
2	11	0.023	5.7	9.9	0.1	1	23	286	308	286	308	0.97
3	11	0.0012	0.3	13.9	0.4	1	23	317	339	317	339	0.99
4	11	0.00077	0.19	14.5	2.0	1	23	345	368	345	368	0.97
5	11	0.0031	0.76	12.6	1.6	1	23	717	740	717	740	0.96
6	11	0.00026	0.064	16.0	1.3	2	23	937	958	936	958	0.97
7	11	0.027	6.5	9.7	5.3	1	23	964	987	964	987	0.97
8	11	0.26	63	6.6	1.0	1	23	1020	1044	1020	1044	0.88
9	11	0.35	85	6.2	0.4	1	23	1067	1090	1067	1090	0.83
10	11	0.0019	0.47	13.3	0.2	2	23	1130	1151	1129	1151	0.96
11	11	0.03	7.2	9.5	5.3	1	23	1157	1179	1157	1179	0.97

Sequence Information

Coding Sequence: ATGGCAATGACAATGGCGCGTGATATCAAAACAGAGGAGGTCATCAGGGAGGCGAAAATTGAAAAGGAAGATACTGACAACATGATGGACGTACAGGACATGAGGCTCAATAGGACTACGAGTATTGACAGCGACAACCGCTCGGACAGAAGCGAAGAGGAAGATTCTAGAAGAGCCCGGAAGAGACAGGCGACAAGTTCACCTTCTCCTATACCGTTAGACAAGAGGATCGCGCGATTCGAATGCCCGAAATGCAGGCTGCGTTTTGACTCCGCTAACACCTTCGATCTGCACCGCTTCACTGCGCACGGTGACGACTCAAGAACAGGATACGACGACATAAGCTTCGAAATCTCGAGCAAAAAGTTTGCGGACATCGCCCGCAACTCACATCTGTCAGCCGGTGACCAGCGCTTGCGATGCGATATGTGCTCAAGGGATTTTCCCTGCGTGCAGGCTTTGAATATCCACAATAAGACGTGTACGAGCATTACTCGAGTCCCGAGTCCCGAACGTGATAGAAGGGAAGACTTTTTTGCTAAACTTGATCTTAGAAACAGATCTTTCGGCATCCCTGGAACGTTAACTCCACCTATGGAAAGATTCACACCTAAATTTGAAGATAGTCACCTAAATGGCATCAGGCATATTGATGCTGCGAGAGACTTAGCAGACATTCAATCTATTTTAAATGTGACGTCAGCCGGAAGTCTGTTAGAACGATTAACAGGAACTAGAGTATCGTTAGGCGATGCTGTTTTGACGCCACCAGATACCGGATCTAAAGATAGAGACCAAGAAGAGACGCAAGATAATTTCGCAGCGGAATTCAGACGAATGAAACTGAGGGGAGAATTCCCCTGCAGATTATGTCCAGCCAAATTTCCAAACCTTCGTGCATTGAAAGGACATAACAGAGTACATCTCAGTGGTACTGGACCGGGACCATATCAATGTAACATGTGCCCTCATGCTTCTCTTGATAAGGCTGCTTTAGTGAGACATATGCGTACACACAACGGCGATCGTCCCTACGAATGCGCAGTCTGTAACTATGCTTTCACTACAAAAGCTAACTGTGAACGGCATTTAAGAAATCGACATGCCAAGGTTACACGAGAAGACGTTAAACGCTCAATTATTTATCACCCATCTGAAGATCCCAACAACGATGAAGTCAATTCGAAGCTGGCTCGTGATGAGGTGAAGAGGTCTCTTGCATTCCAAACTCCTGAAGTTGAAAGACGTAGTGAAGGTTCTGGTAGAGATACACCTCTCACTCATTTTACACCTAGTTTCATTGCTGACAGACATCCAGTCGCAGCATTAACAGCAAAACCTCTTATACCAGAAGCACCTGTAGTTACCCCTCGAGACACTGAACAAGCTGTGCCTAGAATTAAAGTGAAGGCTATCGGTCAACTCAATCAAATACCAGAGTTTAGGCCACCTGAAATCCCATACAAGTCTAATGATATCCCATCAGAAAGCTACGATGAGGAGGCTCCTGTAGATCTCAGTACAAGTGATAATAATAGTTGCGACGTTCTTGATCTCAGTAAAAAGAAGCGTGATGTTGAAAATGATGAACCCCAACCTCCGCCGAGACCATCGTTTGAACCAGACCCAGCAGCAGTTGCTGCCTCAACATTTGAAAAGGCAAGATTACTGTTAGCCCAACAAAGACTTTTTGAAAATACTCTTCCAAAAATCGACCCTACCTACTATGCAACTCAACTATCGCAACTCTACGCGGGCTCAGTCCCAGGAATTCCTGGGCTACCTTTACCACCATCCTTTCCTATCAGCCCTTACTTTCTCCAACCTTCTTTTTTTCCTCACCCAACTGATTCCCAAGAACTTGCCGAAATAAAGCAACGCATCCAAAAGGAAATTATTCGTGGTTTGAGTATGTCAGGTGGCAGACTAGTGGCTAATGAACAAGAAATACCACCAAAGCAAGAACCCGAAGAAGAAGAACCAAAGCCCTTAGCATTACCTAGATCTCCCTCACCACTTCCTCAATCTGAATCTCCTAGACCATTGAGTAACAGCCTGGTATCACCAAATGACTCAGTAAAGATGGTGATAAAGAATGGCATCCTAATGCCAAAGCAGAAACAAAGACGCTATCGTACCGAAAGGCCATTCTCATGTTCTCAATGTTCTGCTCGTTTTACTCTAAGATCTAATATGGAGAGACACGTTAAACAGCAGCATCCACAGCATTGGAGTGTAAGAAGACCTGCCCCGCGAGCTCCTCCACCATACCCGACCCCCGATGGTTTGGCAGACCGAGTAAAGTATGCTCTTTTAGCTCGACACTTAGAAAGACCTCTACAACAATCTGACCGTTCTCCAGCACGAAGGGATTCGGACGAAGTAGCTGACAATGAAGAAGACGAAGATGATACCTTAGTCATCGATGAAGAGCCAGAGTCCGATCTCAAGTCCGATGAACATACAGCTGCGCACAGAGCTGCTGCAGAAATTCTTATGGCAACACGCCAACAAGAGCTCCACAAAGACTTTGACTTGAAAATAGCAGGAAATTTAATTAACAAACCGACTCCTCTACTAAGTGAGAAGGCTGAAACAGGAACGGACCCCATTCCAGCGTCTGTTACTGAAGTTCTGCCTATCACGGCTGTGCCTACGCGTAGTGATGAAGAAGAAGACGAGGAAGGCCTTGTCGCATCAACCAGTGAAGGCAACAACTCTGGAAGCGATGAAAACAAATCCGAGTCTGACACGGGAAATCTACCACCAAAAAAGAAGTCAGCCTACAGCTTGGCCCCAAACAGAGTGTCATGTCCATACTGCCATAGAAAGTTTCCATGGTCATCATCTCTCAGACGTCATGTGCTTACCCACACCGGCCAAAAACCATTCAAGTGTCCTCATTGCCCTTTACTCTTCACAACGAAATCTAATTGTGACCGCCACTTACTGAGGAAGCATGGAGGATCAGCTCGCGCTATTCTGGCTGAACCTGTTACTGATACAGTGGCGCAGCCTCAGCCATCTAACGACACAAGAACTGTCCCCGAAAGACCATTTAAATGCGCCTCCTGTCCTACCAGCACATTCTCGACAATGGATACCCTGAAGAAGCACATGACGGCCAGGCACGGTGCTGGCGACTCCCAACCAGGTTCACCCAACCCTGAGAATGACGAAGCAGCAGAGGGTCTTGTTTTTAAGTGTCATCTCTGTGAAGCATCGTTCAGTGAGCGAACAGGGGCACTAGGCCATCTGGCCTCTACGCATTTGTCTGAATACGAACAGTTGGTGAACAAGGGTGCTTTGGACGCAGCCAGTGACAAAAGCGAAAGCGCTGATGATGACGAGCGAGGCAAGTTTCCTGACCATGCCAATAGAAAGGTGGTCTGCGCATTCTGCGTTCGCCGCTTCTGGTCCGCGGAGGACTTGCGTCGGCACATGCGCACTCACTCAGGCGAGCGGCCATTCGCCTGCGACCTCTGTCGTCGCCGGTTCACCTTGAAGCACAGCATGCTCAGACATCGCAAGAAGCATCGCGAGGAGATCACCGACGATGAGGAGGCTTCGCCGCCGAACACTCCGCTTGCACCAGAAAACCTAACCAATGGATATCGGTACCAGGATGATGACGGCTCCGGAAACGAGATACCCAGCAATGTCAACAACAACAACTCGCCCCCAGCCGCGCCCTACGACAAGAAGCTCAAACTGGACATGACATCGCGCAAATACTCATCGGAAACGGAGAACGACACCGAAAACGGAGGCGACCTCATCGGAAAACTGTTGGGCATCCCTGACAAGACCATCATCAACAAACTGCTCTCGTCAGCAGACGAGGCAGCGAAATTCCTAGGAGTCAACAAATGA
Protein Sequence: MAMTMARDIKTEEVIREAKIEKEDTDNMMDVQDMRLNRTTSIDSDNRSDRSEEEDSRRARKRQATSSPSPIPLDKRIARFECPKCRLRFDSANTFDLHRFTAHGDDSRTGYDDISFEISSKKFADIARNSHLSAGDQRLRCDMCSRDFPCVQALNIHNKTCTSITRVPSPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFEDSHLNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVSLGDAVLTPPDTGSKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFQTPEVERRSEGSGRDTPLTHFTPSFIADRHPVAALTAKPLIPEAPVVTPRDTEQAVPRIKVKAIGQLNQIPEFRPPEIPYKSNDIPSESYDEEAPVDLSTSDNNSCDVLDLSKKKRDVENDEPQPPPRPSFEPDPAAVAASTFEKARLLLAQQRLFENTLPKIDPTYYATQLSQLYAGSVPGIPGLPLPPSFPISPYFLQPSFFPHPTDSQELAEIKQRIQKEIIRGLSMSGGRLVANEQEIPPKQEPEEEEPKPLALPRSPSPLPQSESPRPLSNSLVSPNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDGLADRVKYALLARHLERPLQQSDRSPARRDSDEVADNEEDEDDTLVIDEEPESDLKSDEHTAAHRAAAEILMATRQQELHKDFDLKIAGNLINKPTPLLSEKAETGTDPIPASVTEVLPITAVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGNLPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPVTDTVAQPQPSNDTRTVPERPFKCASCPTSTFSTMDTLKKHMTARHGAGDSQPGSPNPENDEAAEGLVFKCHLCEASFSERTGALGHLASTHLSEYEQLVNKGALDAASDKSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEEASPPNTPLAPENLTNGYRYQDDDGSGNEIPSNVNNNNSPPAAPYDKKLKLDMTSRKYSSETENDTENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_00682845;
80% Identity: -