Samb074403.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992523.1:25991786-25993045[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.5e-05 0.0038 19.9 0.9 1 21 113 133 113 134 0.95 2 9 2.2 5.4e+02 3.6 0.2 3 23 141 162 140 162 0.91 3 9 0.00035 0.086 15.6 0.2 2 23 196 217 195 217 0.97 4 9 0.23 56 6.7 3.1 2 20 221 239 221 241 0.92 5 9 0.0035 0.86 12.5 0.3 1 23 267 290 267 290 0.91 6 9 7.8e-05 0.019 17.6 0.8 1 23 296 318 296 318 0.97 7 9 0.00031 0.076 15.8 0.4 1 23 324 346 324 346 0.99 8 9 0.044 11 9.0 0.8 1 19 352 368 352 375 0.85 9 9 5.3e-05 0.013 18.2 1.4 3 23 383 404 381 404 0.95
Sequence Information
- Coding Sequence
- atgttttggTTACAGATCGACGAAGAGAAAAACTGTCCTCAAGGGGCATGCGTGACCTGCACATCGTCCGCTCTCGCCGCCCAACAATTCCGCCTATTTGTGCTCAACGCGCAACGAACGTGGTCCAAAGCCGTCAGCGCTTTAAGCGAGGTTTCCAAGGCGTACGCCCCTTCAGTAAAATCTCTGTGCACCTTCATCAAACCAGACTTTCAAGTTCACACAGTCAAGGATTACGCTAGCGGCAGCTCAAAGACTGCACTGAAAAGACTCCGGCAACGTTTAACAAGGAAAAATGATAAAGAAAAGAAAGCGCAGACACATAGCTCGGGACCTTATTTCAATTGCACTGATTGTGGAAAAAGCTTTTTCAGCCCATACTTCTTACGTCTGCATTTAAGAAACAGCGGCACGAAAGAGGCGTGCTTGCACTGCGGCGCGGTGCTCTCACGAGGCCTGAAAATGAAGGAACATCTGGAATCTGTTCACGGCGAAGCGCTGCTTCTTTGCAAGCAATGCCCTCTGCTGTTGGGTAACGACATTCGTATGGAGAAGCATGTTGAGAAAGCTCATTCGGTCGGCGCGACAACTTGCAACGACTGCGGACGATGGTTCTCGGGGCAGAGTTCTTTAGAAGTGCACTCGCTGACGCACATAGTACGAACTTGTAGGAGGTGTGGCATGCAGTTCACGAATCGCAACTGCTATAGATCCCATTGGTCTAAGTGTAGACCGAATGCGCGGCGGAATGTTCATCTAGTGTCGCGCAAAAAGCGATCGAACATTCGAGATCCTGCTACCTTCAATTGTGACTATTGCGAAAAATCTTACCTCTCGCGACCACAACTCAAAAACCATATCGTCTGGATCCATATGGATGTAAGGCCACATCAGTGTAAGTGGTGTGGGATGAGGTTTTATACGCCGTCCCGTTTAGCCGAACATACTTTAGTTCACTCGCGCGAAAGGTACTACACCTGCGATATTTGTGGCGCTAAATTGTCGACCAAAGCGGCGGCGACTCACCACAGGCGAATACATACGGGCGAGAAGCCTTACGAGTGCGAGGATTGTGGTGAAAGTTTCTTATCTTATATGAGGAGGCATGAGCACGCTAAACGGAGACACGGGAAGGGACCAAAGATTAATTGTATGCAATGCCCTGCTAGCTTTGTTCGAAGCCACGAGCTTAAGAGACATATGGAGAAATTCCATAGAAGTCAGGGTCAGAATGTGTCTAATGCAGTGCAAGTTGAAGGCTGA
- Protein Sequence
- MFWLQIDEEKNCPQGACVTCTSSALAAQQFRLFVLNAQRTWSKAVSALSEVSKAYAPSVKSLCTFIKPDFQVHTVKDYASGSSKTALKRLRQRLTRKNDKEKKAQTHSSGPYFNCTDCGKSFFSPYFLRLHLRNSGTKEACLHCGAVLSRGLKMKEHLESVHGEALLLCKQCPLLLGNDIRMEKHVEKAHSVGATTCNDCGRWFSGQSSLEVHSLTHIVRTCRRCGMQFTNRNCYRSHWSKCRPNARRNVHLVSRKKRSNIRDPATFNCDYCEKSYLSRPQLKNHIVWIHMDVRPHQCKWCGMRFYTPSRLAEHTLVHSRERYYTCDICGAKLSTKAAATHHRRIHTGEKPYECEDCGESFLSYMRRHEHAKRRHGKGPKINCMQCPASFVRSHELKRHMEKFHRSQGQNVSNAVQVEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01335405;
- 90% Identity
- -
- 80% Identity
- -