Basic Information

Insect: Scoparia ambigualis
Gene Symbol: -
Assembly: GCA_963921215.1
Location: OY992525.1:1241779-1270856[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.002 0.49 13.2 0.3 3 23 217 238 216 238 0.96

2 14 0.0051 1.2 11.9 2.9 1 23 245 267 245 267 0.96

3 14 0.38 92 6.1 2.5 1 23 271 293 271 293 0.96

4 14 0.00013 0.033 16.9 6.0 1 23 298 321 298 321 0.97

5 14 0.44 1.1e+02 5.8 0.5 3 23 328 349 328 349 0.87

6 14 0.73 1.8e+02 5.2 0.2 1 19 357 375 357 378 0.92

7 14 0.0036 0.89 12.4 0.1 1 20 413 432 413 434 0.95

8 14 0.062 15 8.5 0.1 3 23 445 466 444 466 0.95

9 14 0.00097 0.24 14.2 0.1 1 23 471 494 471 494 0.96

10 14 0.00079 0.19 14.5 0.3 2 23 538 559 538 559 0.97

11 14 0.002 0.5 13.2 3.5 1 23 565 587 565 587 0.98

12 14 4.2e-05 0.01 18.5 0.8 1 23 593 615 593 615 0.98

13 14 0.00033 0.08 15.7 1.8 1 23 621 644 621 644 0.95

14 14 0.13 33 7.5 1.1 1 23 667 690 667 690 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.002	0.49	13.2	0.3	3	23	217	238	216	238	0.96
2	14	0.0051	1.2	11.9	2.9	1	23	245	267	245	267	0.96
3	14	0.38	92	6.1	2.5	1	23	271	293	271	293	0.96
4	14	0.00013	0.033	16.9	6.0	1	23	298	321	298	321	0.97
5	14	0.44	1.1e+02	5.8	0.5	3	23	328	349	328	349	0.87
6	14	0.73	1.8e+02	5.2	0.2	1	19	357	375	357	378	0.92
7	14	0.0036	0.89	12.4	0.1	1	20	413	432	413	434	0.95
8	14	0.062	15	8.5	0.1	3	23	445	466	444	466	0.95
9	14	0.00097	0.24	14.2	0.1	1	23	471	494	471	494	0.96
10	14	0.00079	0.19	14.5	0.3	2	23	538	559	538	559	0.97
11	14	0.002	0.5	13.2	3.5	1	23	565	587	565	587	0.98
12	14	4.2e-05	0.01	18.5	0.8	1	23	593	615	593	615	0.98
13	14	0.00033	0.08	15.7	1.8	1	23	621	644	621	644	0.95
14	14	0.13	33	7.5	1.1	1	23	667	690	667	690	0.94

Sequence Information

Coding Sequence: ATGTCTCTAGCCGCCCTAGCGTGCCGCGCCTGTCTTGCAACAGACACGAATTTATTCGACTACAACGAAAACAAATTGAAAGATCAATTTATGGAGCTCATAGGAAGTTCgACGAAGGAGTCGGAGAGGTTACCCCAAGCCCTATGCTCGTACTGCAACGCCTTGCTGCTGAAGTGTGTTGCGTTCAGAGACAGGTGTCTGCGTTCGCAGGGTATCCTCGAACTAATTCATGAGGACGATTTAACAGCAGCATACATCGGCTCAATAGACCGTGATCATTACAACTTGAATCTGAACCTTTCAATATCCAATCCAGTGATAATTGACAGTGATATCACAGAAGATGACATTCCAATCGAGACTTTGGAAGAAGACTTCGGCTATGAAGACTATTTAAAAGATGAAGTTAAGGTCAATTTGGAAGATGACTATGAAGTCATATCCGAGAACGCAGACTACAAAACTTTGTACGATGACGTTGGTGATGACGATGAACAAGTGCCTGCTGAGAGACAGAAGAAACCTTTCAGCGTTCAGGACTTTGAGAGCAACTTCAATGTCAAAATAGAAGTGTTGAGTAAAGAGCAACAGATCTTAGAGGTTTACGATCGGAAGAGGTCAGCTGCCTTTTTAACATCTGAGAATGCATGCAATGACTGCGGAAAATTTTTTTTGAATGCTGAAAAGTTGAGAAACCATTTTATGATGGCCCACGATCCCAATATTGGACACTACTTCTGTGAGCTGTGTAACAGTAAATATGAGAACAGGTCAAAGTTAAGAAGACATCTGTTCTCACACAGATACCGTTTTAACTGTAATGAGTGCTCGTTCTCTACGATGCGTTTGAGCTCGGCCAAAAATCATTATTACAAACATCAGGGTGTCCAATTCTGTTGTGAACACTGCGGAAAGAGTTTCAGTATGAAAACGTCATACTTGTCCCATTTGAGGAAAATTCACCCGTCTCAAGACAGCTGGTGTAAGTATTGCGGTGAATCGTTTTTGGGTGACATCGGTCTGCGGAATCATAAGAAAATGTCACACTACGACGTGCAAAGCGATCGACATGTTTGCTTGACTTGTGATGTGAATTTTATGAACGACGAAGCGTTGCAGACCCATAACAGTACTAGTTGCTCGAAGAATCCTTGCTTTCAATGCGGCTGTGGCTTTGTGGAGGGACAGCTTTTGCGTTGCCACCTCTTGAGTCATCGTAAGAAGACGAATAAATCGTTTAGGTGTGCCATTTGTGGTGTCGTGTTTCAAAACTTGAAGAGTTTCAACACTCATTTGGAGTTGAGTAAGGGGGTATGTTACGGGAAAAACTTTTGCAGAAATTGTGGAGAACTCTTTGCCACCAAAGAGGAAGTGGAAGAACATGTCTTGAAGATGCATCCGAATATGAACTTTGTGTGTGCTGAGTGCGGCCGCAGGTACCCAACCGCTGGCAAGCTAGACCAGCACACCAAGCAAGCTCACAGACGCAAGAAGGGCGCCACCCGCCGGCTCATAGGCAACAAGCGGTGGAGCGTGCGTACAGAGGGGGGGGAGACCGTCATAGCGGGGGTGGGGGGCATGCTCAATGTTGAGGCGAGGGACGGTAGGAACGTCTGCGAGTTCTGCGGGAAGGTGTGTGCGAACATAATCGCCCTGAAGATACACCGGCGCGTGCACACCGGCGAGAAGCCGTACCAGTGTCCCATCTGTGCGAAGTGCTTCACCACGGAGCTGCTGTGCAAACAACACATTCGCGTGCACACCGGCGAGCGGCCATACAAATGCTTGTATTGCGCCAAGAAGTTTAAAAGCAAACCCGCGGTCAACAGGCATATGTTGATCCACACCGGCGAGCGCAAGCACATCTGCACTCTGTGTAACAAAGCGTTCCGCACCTCCACCGACGCCAAAACGCACATCAAATACGTGCACATGAAGGTGCCGGCCGCGCCGCGCGACCGGAAGCCGAAGGGGccGGTTCCTACGGACGAGCGGAAACACATATGCATGTTATGCAAACAAGCCTTCTTCACTTCGACTGAAGCAAAGTTACATATAAAACAAGCTCACATGGCGGCCCCGCCTCTACCCGTAGTAGTCAGCACTGTAGAAATAGCGTAA
Protein Sequence: MSLAALACRACLATDTNLFDYNENKLKDQFMELIGSSTKESERLPQALCSYCNALLLKCVAFRDRCLRSQGILELIHEDDLTAAYIGSIDRDHYNLNLNLSISNPVIIDSDITEDDIPIETLEEDFGYEDYLKDEVKVNLEDDYEVISENADYKTLYDDVGDDDEQVPAERQKKPFSVQDFESNFNVKIEVLSKEQQILEVYDRKRSAAFLTSENACNDCGKFFLNAEKLRNHFMMAHDPNIGHYFCELCNSKYENRSKLRRHLFSHRYRFNCNECSFSTMRLSSAKNHYYKHQGVQFCCEHCGKSFSMKTSYLSHLRKIHPSQDSWCKYCGESFLGDIGLRNHKKMSHYDVQSDRHVCLTCDVNFMNDEALQTHNSTSCSKNPCFQCGCGFVEGQLLRCHLLSHRKKTNKSFRCAICGVVFQNLKSFNTHLELSKGVCYGKNFCRNCGELFATKEEVEEHVLKMHPNMNFVCAECGRRYPTAGKLDQHTKQAHRRKKGATRRLIGNKRWSVRTEGGETVIAGVGGMLNVEARDGRNVCEFCGKVCANIIALKIHRRVHTGEKPYQCPICAKCFTTELLCKQHIRVHTGERPYKCLYCAKKFKSKPAVNRHMLIHTGERKHICTLCNKAFRTSTDAKTHIKYVHMKVPAAPRDRKPKGPVPTDERKHICMLCKQAFFTSTEAKLHIKQAHMAAPPLPVVVSTVEIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -