Samb072489.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992523.1:12045309-12049638[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.056 14 8.7 0.3 3 23 49 70 48 70 0.92 2 15 2.3 5.7e+02 3.6 0.1 2 23 96 118 95 118 0.87 3 15 0.00013 0.033 16.9 2.6 1 23 140 162 140 162 0.97 4 15 0.0012 0.28 14.0 1.0 1 23 166 189 166 189 0.98 5 15 0.0065 1.6 11.6 0.1 3 21 196 214 194 215 0.93 6 15 0.00031 0.077 15.7 1.2 1 23 222 245 222 245 0.95 7 15 0.0049 1.2 12.0 1.2 1 23 252 275 252 275 0.94 8 15 0.0019 0.47 13.3 3.1 2 23 281 302 281 302 0.97 9 15 0.57 1.4e+02 5.5 0.7 2 23 385 407 384 407 0.92 10 15 0.016 3.8 10.4 0.6 2 23 430 451 429 451 0.97 11 15 5.3e-05 0.013 18.2 2.0 1 23 455 478 452 478 0.91 12 15 0.7 1.7e+02 5.2 0.3 3 22 486 505 485 505 0.94 13 15 0.019 4.7 10.1 1.4 1 23 512 535 512 535 0.88 14 15 0.069 17 8.4 4.8 1 23 542 565 542 565 0.94 15 15 0.0022 0.54 13.1 2.2 5 23 574 592 568 592 0.89
Sequence Information
- Coding Sequence
- ATGTACGTAAAAAACGCGAACCGACTACATAGCGaacctttttcttttttagCGGAGCGTTTCGACACTGTGCGGGCGAACGCGGAGGTCATCGTCCGCTGCACGACCGCCTATCCCTTCAGAGTCAATGATAAGTCCATACTTTGCGTCTACTGCCATGAGTTATACGATGACCCGGAACTATTCAGAAAGCACATGGACGACGAACATCACGTGTTCAGCTTGAAAGTTGCCTTCTATAACCTCCCGAAGCAGGAGTTCATCAAAGTTGACCTGACCAACTTAAAATGTAGGCAGTGCTCAGCAAAGTTTGCCGACGTGGACAGGGTGGCGAAACACTTGGTCCAAGAGCACAACCAGAAAATTGATTTGAATCACAAAATCGGTGTGATGCCGTACCTTTTGCAGAAGGACTCGTTTAACTGTGCTGTGTGCAAAAAGAATTTTCCCTCGCTATTCCATTTGAATAGGCACACCATCACCCATTTTTTGAGTTATGTTTGTCACGTATGCGGCTCAAGCTATATAGCGACGACCAGTTTGTTAAGACACCTTCGTTCCAAACACCAAGATTACGAGGTGATATGCAAAAAGTGCGGTAAAATTTTCCCCACTATGGAGGCGAAGGAGAAACATCGCAGGTTGGAGAAATCCTGCTTGCCGTACTGCTGCCCGAAATGCAATGAACGATTCGGCGATTGGAAGGCACGCAAACGCCACATGGAGCTCGCGCATGGACAGTCTAAGAGGACTTATCGGTGCGCGGACTGCGACCTTAGCTTCAACAATGAGAACTCTTACTATGACCATTTCAAGTTGCAGCATTCCGAGGATTGTGCCACTTGCAAATACTGCGGCTTGAAGTTCTTGTCCAGGTATCGCTTGAAACGGCACATGTCGAAACACGTTGGAGTCGACGGTACGCCGTACTACCTCGTGCGGAGGAACGCGGAGCTTATTATAAAGCACACGACGGCTTATCCCTTTCGCGTGAATCTCAAGTCGTTCAGGTGCGTTTACTGCGCCGACTTGATCGACGACCCTGAAGAGTTTCGAGAGCATATGACTCGGGAACATAACACGTTTACACTAAACATGGCCTTTGTGAAACTACCTAAAACGGAGTCGGTCAAAGCCGACATAACGCGACTGAATTGCCGCATTTGCAACCACACCTTAACCAACCTGAAAGACGCTGCGACGCATTTGAAGGATGCGCACAGGAAATCTGTCGATTTCGATGCGGATTTCGGTGTCATGCCGTACTTGCTAGAAAAGGACAGATGGAGGTGCGCAGTGTGCGAAAAGAATCTGCCGTCCCTCTTGCACCTGAACAAGCATACGATAACGCATTTCCAATGTCACGTATGCGAAATATGCGGGAAGAGCTATAAAGCTTCCACGGGGTTAGTGCAGCATATGCGAGCGAAACACGACGGTGGCAACAAAGCGTTTTGTAGGCGTTGCCAAACAGTATTCTCTTCAATGGAGGCGAAAGCGATACACCAGAGGACGGAGAAGCGTTGTATGATACACTGTTGTCTAGAGTGTCCAGAGAGATTTCCGAATTGGGAGAGCAAACAGAAGCATCTGGTAGAAGTTCATGGTATGGAGAAGAAGACGTACCGCTGTACCCATTGTGACTGGGTCTGTGAGGATCGCCGCGCGTTTTACGACCATTTTAAGTTACGCCATTCCCAAGATTGTCTGCTGTGCATTCATTGTGGATTGAAATTTGCGACGCCCTCTAGACTGAACAGACATTTGGAGAAACATTTGACGTAA
- Protein Sequence
- MYVKNANRLHSEPFSFLAERFDTVRANAEVIVRCTTAYPFRVNDKSILCVYCHELYDDPELFRKHMDDEHHVFSLKVAFYNLPKQEFIKVDLTNLKCRQCSAKFADVDRVAKHLVQEHNQKIDLNHKIGVMPYLLQKDSFNCAVCKKNFPSLFHLNRHTITHFLSYVCHVCGSSYIATTSLLRHLRSKHQDYEVICKKCGKIFPTMEAKEKHRRLEKSCLPYCCPKCNERFGDWKARKRHMELAHGQSKRTYRCADCDLSFNNENSYYDHFKLQHSEDCATCKYCGLKFLSRYRLKRHMSKHVGVDGTPYYLVRRNAELIIKHTTAYPFRVNLKSFRCVYCADLIDDPEEFREHMTREHNTFTLNMAFVKLPKTESVKADITRLNCRICNHTLTNLKDAATHLKDAHRKSVDFDADFGVMPYLLEKDRWRCAVCEKNLPSLLHLNKHTITHFQCHVCEICGKSYKASTGLVQHMRAKHDGGNKAFCRRCQTVFSSMEAKAIHQRTEKRCMIHCCLECPERFPNWESKQKHLVEVHGMEKKTYRCTHCDWVCEDRRAFYDHFKLRHSQDCLLCIHCGLKFATPSRLNRHLEKHLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -