Samb046262.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992513.1:32274157-32297057[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.7 9.1e+02 2.9 0.3 2 23 6 27 5 27 0.95 2 13 0.0041 1 12.2 0.2 2 23 1008 1030 1008 1030 0.93 3 13 1.9e-05 0.0046 19.6 1.7 2 23 1171 1192 1170 1192 0.97 4 13 0.00036 0.089 15.5 2.9 1 23 1198 1220 1198 1220 0.98 5 13 0.009 2.2 11.2 2.5 2 23 1227 1248 1226 1249 0.95 6 13 0.41 1e+02 5.9 1.2 5 23 1262 1280 1261 1280 0.96 7 13 0.016 4 10.3 0.7 3 23 1287 1308 1286 1308 0.96 8 13 0.015 3.7 10.5 0.1 2 23 1328 1348 1327 1348 0.97 9 13 0.00075 0.18 14.6 1.2 1 20 1354 1373 1354 1376 0.91 10 13 0.00047 0.11 15.2 0.3 1 23 1384 1406 1384 1406 0.99 11 13 0.015 3.8 10.4 7.3 1 23 1412 1434 1412 1434 0.98 12 13 7.4e-06 0.0018 20.9 1.3 1 23 1440 1464 1440 1464 0.98 13 13 0.0006 0.15 14.9 5.3 1 23 1470 1492 1470 1493 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAGCTCGTGCAGTGCCCCGTGTGCACGCTATACCTTCACAATGGTATGAGTTTGGAGTCCCATTTAGATACACATCCCAAAGACCAAGTTATCAAAGCATTATGCAGTCTTACCAATAAAAGCAGTAGTAGCTATGGAAGTCGTACGTCAACACCACTGAATTCCGAAAGATCGTATAGAAGCAGATCCCGAACTCCAGCCACAGATGAGAGGTGGGCAAGCTCTCATCGCAGTAGCGACAATGAAAGATACTGGAGAAGAACTCCTAGCAGAACCTCTAAATCAAGCCAAATGCTTAATAATTCTCGAGTGGGCACTCCAGATACTAGAATTGGAGAAATAAATTTTGATAACAACTTAAATAATTCGATTCCTTATGCTGGGACACCTTATTCTTTAAAAACTGATAAAACACAGCAAACATATCTGAACACTCCAACGCTGCCTGAACTTGATCTGCAATATGTTTACTATCCAGACTCACAAGAAGACAGGGAGATTAAATACTCTCGAAGTGCAGAGTACACCCCACTATTAGATGGTACCAGCAGAGTGTTCTCCAACAGTATACCAACGGTCAGCTCTAGTGTAAAACTGCAAACCACCTTAGTGCCTGCTGTCCCTAGGAGAGGGAacgaaaatatttcaaaaatgttACCaaaaccaaatttaaaaacaaacctACAAAACCTACTTGTAAAAACAAGCGTAGGTGGAGTGCAGTATCTATCTCCAGAAGGAAAGCCCGTGCATGTGATGGTTCCTACAGCACCAACGTTTGTTCAAAAGAATGTACAAAATAGCATGATTATGACCAGCAGCATCCCAGGGCCATCAATGGCAGAAAACAAAGCAGCAGCTCCTCAATTGTCAACAAACCAATTTAACCAAATGACTAGTAGCACATTCACACCTGGCACCACTGTTGTACAGAATTCTCAGATTATTTATAGAGAAATGGTTCATAACATTGATGGTAAGAGATTTATTTCATGTGTGCCTTCAGTTGTCAGCCATGAAAATGTAACCAATGTTTCTCAGGGGACCGCTATGTATCAAAATGTAATGGTTCTAGATCAACGAGGAAATACTTCTTGTATGTACGCAGCTCCTCAGCAAATCATATCGAAGCCTTCTAACTCATCCGTCTACAGTGAAAACTTGTCACATATACCAACTAGCACAACTACACAACATAATGATAAGACACCTAATGCTCATGACTCTAATAAAACTTTGATCATAGAAGTAGGTCCAATTATTTCAGAAACTGAAAGTAAAAAGAATTCTTCCATCACAACACACACAGAAATAGACCTCACTAAATCTGATAACTTAGATCAAattgataatttagaaaaaagtgAAACTCCAGGACCTAGCAGAGGGCTTAAAATTCTTAGCAACATTAAAGTTGAAGTTCCAGTTcaacataacaaaaatatgCTAAACACGGTTTTGGACTTGACAGGACCTAGTGAATCTGAATACACAGAACGTTCAGTTTCACCTGAAAAAATACTTCCTGACTTGGATGACAACAATGATAACATGGACAATAATCCGATTTTGTCAGATGAGTGTACTCAGCCATCAATATCAAGTAGTGATAGTATAGTTTCCCATACATTCTCTGTTATAAAGAATGTTGGTAATCCACCTTCATACAAAGATTCTAAATCCAATACTTTGGACAGCAAAATTGAAACAGATTTTTCAGACAGTTGTCCAGTCCCTGACTTGATATGTAATGAAAAACCATCCATTTCACCCTGCAGTGAGCTCTCTGAAAATGGAGAGATTTCCAATGATCGTACTTCTATATCACCCAAACCAAATAGCAGCCAACACGTTAGCATAGAAAGCATAGATAAGAAAATACAGATTCAGCCTGTAAAACCTTACAGACATAATGCATTTAGATTGAATAATCTCTATGtcaaaaaacacaaaaagataTTACAGATAAAAAATGCTAAGCCTGTACCATGCAGTAGCACCAGCCAAAGCATAACAGAACCTAGAGCTTCTTCATCTTCCTGTCCAGAGAACTACTCTATGAGTAAATTTCACAATATGGAAAAAAGTGAATTACAAGCAAAATTGAGCTTGTTAAAAACAATATCAGTTGAACAAATACATGTAAATAATCATCAGGATGACTTTGATGCTGATACTGAGGAGTTGTCAATGGATATTGAACCTGTGGCTACATCTAGTATGGGCCAAGGTGACCAGTTCACAACTAGCATTGACGTGGTACAAGTGAAGGAGGAAGCTAATAATAGTAACCAAGAAGGATTTAGCAATGACGATAGTCTGTCGAACCGAGGCAGTATCACACCGGTGGAAAGTTTGCGTCCTATAAACGTTATAACATATGGAAACATGGCACCTGGAGACTTCGATGATGAGTCTAACCACCGGGAACTGCTTGAGCTGGAAGCGGCATCTAAGAATAAACAATTTGTCAGTATGATGAATGAAAACtattttggggataatatttaCGCAGATTACTTCACCCCAGACCGGGTGGAGACATTTGAGTCATCGAGAGTGTCAAGTCCTAAGGAGGGTGCCAAAGACATGTACATATGGGGTGAGTCATCCCATAAGGAGAGTGAGTTTGTTCTGCCGAATTTTATACATGAGAGCTACAAGATAGTTGAGAGCACTGGGATTGATTATTCGGACTTGGGTAATAGGGTTGTGCATATGGAGGGTGAGAGTGACAGTAAAGCAGACGTGCTCAGTGAGGGCCGTAGCAGCGAAGGCGACCCTCCACTGAACATATGCGCAGACGAGCGCATGCCGCCGCGGGGTGAGCTCAGCGGGCAGGAGAGCAATGGGGACATGGAGTCAGCTTGGAGCGGGATTTACCCTGACGTGCCGCCGGCGCCGCCCTACGACCTCATAGCGCGTGAGAGTTGGGTCTCCGATGGCTCCGAAATGGATGCTAGCGAAAAGAGGGATAATTTAGAAGAAGAGTTGTACCCCAAAGCGCGCGGCAACGTCTGCACCCAGTGCGGCACCAAGTTCATATCGGCGAAAGAGATGCGCGCGCACCGGTCGCTCGCGCACCCGCCCGCCGCCGGCGAGAAAACCTCCTACAGCCGCATGATCACCGCGCGCGCTATTAAGAAGGAAGAGAAACCTGACGAGAAAGTGCTCCAAGATACTTCCAGAGCATTAGATGCTCGCGCACAAGATCTCCTACAGTACAGCAGGATAATTACCGCGCGCGGTAATAAGAAGGAGGAGAAACCCAACGAGAAAGTGCTCCAAGATGCGGCTGCCAGCATTCTGCCGATCGACTCCAAGGAGTCTATAGCCACCACGATGCTGCAAGAGTACGACGGGCTGGAAGCCAAGCCCAAGCTGGAGCCGCTTATCAAGCTGGAGCCCAAGCAGCGCCGCCGCCGTGACTACGTCTGCCCCACCTGCAAGGTGGATCAGCTGACGGACGTGGCCTTCCACGCGCACCTGAAGATCCACCCTTTGGAGTGCCTCACGTGCGGCAAGTGCTTCTTCCGGCGAGCGAACCTGGCGCTGCACATAAAGACACATCTCGGAATCAAGAATTTCAAATGCGAGGTATGCGAGAAGCGGTTCATCACCAAGCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACCGTCTGCGATGACACCTTTAGACGGTACTCCAACATGGTGCAGCATCGGGACCGCCACCACTTTCAGAAGAAGGCGAAGGTCCGCGACTACGTGTGCCAGTGCGGCGCGGTGTTCCAGTCGCGCGCCAAGTTGCATTGGCACCGCGAGACGCATGCCGCGAGACCCAAGGCGTGCCTGTACTGCAGCGACAAGTTCGTGCACGCGGCGTCGCTCACGCGCCACGTGCGCCGCGCCCACGACCACTACTACCTGGCGGCCGGCACGCGCCAGCCCAAGGGCAAGCCCGAGAACGTGCCATGCCCCGTCTGCAAACAGGTGTACTTACGCACGAATCTCCGCGCGCACCTGCTGACGCACAGCGGCGCGCGGCCGCACGTGTGCGTGGTGTGCAGCAAGGCGTTCACCACCAAGTGGAACCTCAAGCTGCACCGCTGGACGCACGTCAGCCGCTCCGCCAAGCCCTTCAAGTGCACCCTCTGCAAGGGCGCATTCATCCGCCAAGCGGAGTACCTGGCGCACATGAACTCGCACAAAGCGGTGCGCCCCTACACGTGCAACTACTGCGGCTGCCAGTTCATACGCAAGTACAACTGCCAGCGGCACGTGAAGGAGCACGAGATGGCCAAGAAGTACGTGTGCAAAGTGCCGGAGTGTGGTAAGTCCTTCCACAGGAGTTACTACCTATCTGAGCATATGAAGGTGCACAGCGGCGCGCGGCCCTTCTCCTGCAACATATGTGGGAAGTCGTCGAGCAACAAGTCGAATCATAACAAACACCTGAAGATTCACCACGCCCGGGAGCCGGTCGCCGCGGAGGCGTAG
- Protein Sequence
- MEQLVQCPVCTLYLHNGMSLESHLDTHPKDQVIKALCSLTNKSSSSYGSRTSTPLNSERSYRSRSRTPATDERWASSHRSSDNERYWRRTPSRTSKSSQMLNNSRVGTPDTRIGEINFDNNLNNSIPYAGTPYSLKTDKTQQTYLNTPTLPELDLQYVYYPDSQEDREIKYSRSAEYTPLLDGTSRVFSNSIPTVSSSVKLQTTLVPAVPRRGNENISKMLPKPNLKTNLQNLLVKTSVGGVQYLSPEGKPVHVMVPTAPTFVQKNVQNSMIMTSSIPGPSMAENKAAAPQLSTNQFNQMTSSTFTPGTTVVQNSQIIYREMVHNIDGKRFISCVPSVVSHENVTNVSQGTAMYQNVMVLDQRGNTSCMYAAPQQIISKPSNSSVYSENLSHIPTSTTTQHNDKTPNAHDSNKTLIIEVGPIISETESKKNSSITTHTEIDLTKSDNLDQIDNLEKSETPGPSRGLKILSNIKVEVPVQHNKNMLNTVLDLTGPSESEYTERSVSPEKILPDLDDNNDNMDNNPILSDECTQPSISSSDSIVSHTFSVIKNVGNPPSYKDSKSNTLDSKIETDFSDSCPVPDLICNEKPSISPCSELSENGEISNDRTSISPKPNSSQHVSIESIDKKIQIQPVKPYRHNAFRLNNLYVKKHKKILQIKNAKPVPCSSTSQSITEPRASSSSCPENYSMSKFHNMEKSELQAKLSLLKTISVEQIHVNNHQDDFDADTEELSMDIEPVATSSMGQGDQFTTSIDVVQVKEEANNSNQEGFSNDDSLSNRGSITPVESLRPINVITYGNMAPGDFDDESNHRELLELEAASKNKQFVSMMNENYFGDNIYADYFTPDRVETFESSRVSSPKEGAKDMYIWGESSHKESEFVLPNFIHESYKIVESTGIDYSDLGNRVVHMEGESDSKADVLSEGRSSEGDPPLNICADERMPPRGELSGQESNGDMESAWSGIYPDVPPAPPYDLIARESWVSDGSEMDASEKRDNLEEELYPKARGNVCTQCGTKFISAKEMRAHRSLAHPPAAGEKTSYSRMITARAIKKEEKPDEKVLQDTSRALDARAQDLLQYSRIITARGNKKEEKPNEKVLQDAAASILPIDSKESIATTMLQEYDGLEAKPKLEPLIKLEPKQRRRRDYVCPTCKVDQLTDVAFHAHLKIHPLECLTCGKCFFRRANLALHIKTHLGIKNFKCEVCEKRFITKQKLSEHHNIHTGRAPVKCTVCDDTFRRYSNMVQHRDRHHFQKKAKVRDYVCQCGAVFQSRAKLHWHRETHAARPKACLYCSDKFVHAASLTRHVRRAHDHYYLAAGTRQPKGKPENVPCPVCKQVYLRTNLRAHLLTHSGARPHVCVVCSKAFTTKWNLKLHRWTHVSRSAKPFKCTLCKGAFIRQAEYLAHMNSHKAVRPYTCNYCGCQFIRKYNCQRHVKEHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKSSSNKSNHNKHLKIHHAREPVAAEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682755;
- 90% Identity
- -
- 80% Identity
- -