Samb073400.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992523.1:17631441-17653798[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9e-05 0.022 17.4 3.3 1 23 213 236 213 236 0.98 2 11 0.0011 0.27 14.0 0.0 1 23 242 265 242 265 0.96 3 11 0.00026 0.064 16.0 2.0 1 23 271 294 271 294 0.97 4 11 2.2 5.5e+02 3.6 3.1 1 23 300 322 300 322 0.95 5 11 0.36 87 6.1 3.8 1 23 328 350 328 350 0.98 6 11 3.9e-05 0.0095 18.6 0.7 2 23 357 379 356 379 0.96 7 11 1.3 3.3e+02 4.3 0.4 2 9 396 403 396 408 0.89 8 11 0.12 29 7.7 4.5 2 23 423 445 423 445 0.96 9 11 0.00023 0.055 16.2 2.1 3 23 453 473 452 473 0.97 10 11 2.4e-05 0.0058 19.3 0.2 1 23 479 501 479 501 0.98 11 11 4.3e-07 0.00011 24.7 0.5 1 23 507 529 507 529 0.98
Sequence Information
- Coding Sequence
- ATGTCGATAGAAACGTTAAAACTTGAAAAGGGATTGTGCCGATGTTGTCATAATGAGGGGGTTCATAAAAACCTAGCGGAGCCTTGGTTAAAAGCGGGTGGTGTCGAGATATACGCCGATATGTTGCAGAGCTGCTTAGATATAAACCTAACACCACTGCCCGGCCCTCACTGTACCGTGACATACACAATATGCGAGGCTTGCATAGAAAGGCTGCGGGACGCGTGGAGCTTCAAACAACAAGTGAACGAATGCGAACGGCAATTCAGAGAGTACTATAGCAAAAGTGACATAAAATTGGGTTCCGGTGTCGATATAGAAGTTAAACGCGAGAATATAGATGATGAAGATGTGAAATTGGATTTGTCGCCTATACACGACGACGACGATTTCCGACTCGACGACTTCGACGTTGACGACGAGACTAAAGTATCTGATGTGGACATCAAATCGGGGCCGAGGAAGCTGCGTCACAAAAAGGCCAAGGCCCCGGAAAAGGCCAAGGCTAAAAGCAAACCGGCGCGCAAGCCCAAAGACGAGGCTGCGAAGGATCCTGAGAGCCGCAAGAAAGGCGATATGCCGTGCACACCAAAGTTCCGTCTACGCAACACGGACTATACCACCGACGGTGACGTATATAAGTGCAGCAAATGCCAGAAGGCGTACGAAAAGACCTCCTCACTGAAATACCACGTGCGTACAAAACATTACAAGATACCGAGATATCCGTGCCCTTACTGTGAGGAGGGATTTATGACGCCGGCTCCGTTGACCGTCCACAAACTTAAGGAGCACAATGTGGACGATCGCTTCAAATGCAACGCGTGCAAAGGCACCTTCAACACCAAAGTCCAACTGAGAAAGCATATCAACAATTTCCATATGCTAGGCGAGAAGTATAAATGCGAATTTTGTGAGTACGAAAGCTTCAGTTTCGAGGGTTTGTACAAACACAAGTTTAAACATAAAACTGTGAAGGATTACCACTGCAGGTTCTGTAGGAAGGCTTTCTTGAGGAAAACCACATTGGATTTGCACGAGAGAATTCATACGGGCGACAGGAGGAAAGTGTGCACTGTTTGCAGCAAAGCGTTCGTTCAGAAGGCCAGCTTGAACTACCATATGACTAAGTACCATCCTGAACACTACAGATTCGTTCATCTCAAACGTCGTCCGAGGGAGAGGAAATGTCCTCATTGCGACAAAAAAGTGGCGGGGCATTTGAGGGCGTACCATTTGGAAGAGGTGCACAATATACCGGCGCCGACATGTGGCATCTGTCAAAGGAAGTTTCGATTCCCCTGTGATGTGCTTCAAcatcacaaaaaaatacatatggGTGAGAAAAGTGCGCACTGCAGTGTGTGCGACAAAGGATTTTTTGATAGTCTGACTTTGAAGTCGCATATGTTGACGCATTCGAGCGAGAGAAGGTTTCAGTGTGATCTGTGTGGACAGGGGTTTCGGTGGAAGAGCAATTTGAAAGACCACATACTGATTCATATGGAGGTGAAGAGGTATGCGTGCAAAGTTTGTGGGAAGGCGTACGTGCAAAGGTCGTCGTTGAAACGGCACGGCAGGAGCCACTATTGA
- Protein Sequence
- MSIETLKLEKGLCRCCHNEGVHKNLAEPWLKAGGVEIYADMLQSCLDINLTPLPGPHCTVTYTICEACIERLRDAWSFKQQVNECERQFREYYSKSDIKLGSGVDIEVKRENIDDEDVKLDLSPIHDDDDFRLDDFDVDDETKVSDVDIKSGPRKLRHKKAKAPEKAKAKSKPARKPKDEAAKDPESRKKGDMPCTPKFRLRNTDYTTDGDVYKCSKCQKAYEKTSSLKYHVRTKHYKIPRYPCPYCEEGFMTPAPLTVHKLKEHNVDDRFKCNACKGTFNTKVQLRKHINNFHMLGEKYKCEFCEYESFSFEGLYKHKFKHKTVKDYHCRFCRKAFLRKTTLDLHERIHTGDRRKVCTVCSKAFVQKASLNYHMTKYHPEHYRFVHLKRRPRERKCPHCDKKVAGHLRAYHLEEVHNIPAPTCGICQRKFRFPCDVLQHHKKIHMGEKSAHCSVCDKGFFDSLTLKSHMLTHSSERRFQCDLCGQGFRWKSNLKDHILIHMEVKRYACKVCGKAYVQRSSLKRHGRSHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -