Samb050892.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992515.1:5816657-5857600[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00012 0.028 17.1 0.0 1 23 17 40 17 40 0.96 2 14 0.57 1.4e+02 5.5 3.2 1 21 163 183 163 184 0.93 3 14 0.015 3.7 10.5 3.2 2 23 228 249 227 249 0.95 4 14 0.00017 0.042 16.6 1.4 2 23 297 320 296 320 0.97 5 14 0.089 22 8.0 0.3 1 23 326 348 326 348 0.93 6 14 0.0013 0.33 13.8 3.3 1 23 354 376 354 376 0.98 7 14 0.12 30 7.6 0.0 2 19 387 404 386 407 0.91 8 14 0.048 12 8.9 0.1 1 23 486 508 486 508 0.97 9 14 1.3 3.1e+02 4.4 7.2 1 23 515 537 515 537 0.95 10 14 0.00085 0.21 14.4 1.8 1 23 575 598 575 598 0.95 11 14 4.1e-05 0.01 18.5 0.8 1 23 605 628 605 628 0.98 12 14 0.0093 2.3 11.1 0.7 1 23 653 675 653 675 0.97 13 14 0.00032 0.077 15.7 0.2 1 23 681 703 681 703 0.97 14 14 0.00019 0.047 16.4 0.4 3 23 711 732 709 732 0.95
Sequence Information
- Coding Sequence
- ATGGATCACGCGGACGAGCACAAGCACGACCTCGACGAGGGCGTTGTGTACCCCTGCCCTATATGCGACTACGGTTACGCCAAATCAGGTTGGTTGAAGGCTCACCTAAAGGCGGCGCATGAGAAAACAGCTCCCGAAAATGTCAAGAAAGAAGTTTTGGAAGACAACAACAATGATTCTGAACAAAAGTCTACGTTAGCATCACCCATAGCTCGAAGAACGAGGAGTTCCACTAAGAAAGCTGATGATAATCCAGAAAAAGaagcaAGTCCTCAAGTTGGTTTGAAATTAGAAAGGAAGGAAGAACAGAGTGCACCTTCCAACATGGTAATAAAGACGGAAATTAAACAAGAGGCTATAGACAGCAGCGACGACGAGATATGGATAGTGCAAACCGGCGATGAGACCAACGAACAGTTAGCACACTTACTGCACGCTGCGAAAGCTGCTAAGGTTGGCCAGAGTAATGAGAGGAGCAAGAAGATGCATAAATGCTTCAGTTGCAGCCGAATATTCGCAACGGAAGATAGTCTCGACACTCACAAATGCCGACGTCGCGGCAGAAAGAGAAAGTCTCCGAGCAAAGAGGACAACACTATATGTGTGCCGACAAAAGAGGATTTTATGAAGAGAACTCGCCGCAAAAAGACCAAGGGCCCAACCTCTGACCCGCAGATTGTGACCTGCCACGATTGCAGCGAGTCGTTCACTTCCAAAGTGAGGCTCAAGTTTCATATgcAATTCCACTCACCAACCAACATGCTCACCCCGGACGGCCGGTACAAATGTGTTGAGTGTGTAGCGACTCGCCCCACCGAGGCGTGCTTCCCGGCTGAGGCAGCTCTGTTCGACCACATACACTTCAGGCATCACAAGCGCAGGCGCTGGCAGTGCCCGGTCAGAGGGTGTGGGAAGACTTTCCACCTCAGGGCAACGCTCACGAAGCACAGTCGCACGCACACAGACACGCGCCGCTACGTGTGTGTGACGTGTGACAAACGGTTCCTAGACAAGCAGACGCTGGACGAGCACGGCGTCACGCATTTGCAGATAAAGCCGTTCCAATGCCACATATGTCTGAAGCAGCTGACGCGCCGCTCCCGCCTCAGGATGCACCTTAGAGCTCACGAGGAGGAGCTGACTCCCAAGCTAGTGCTGGTCTGTGGAGTATGCAGCAGGGCCTTTAGAGACCACGAAGATGCTCAGGCTCATGCAGCCAAATCATCAGAGTGCCTTGAGGAGTTCACCAAGGAGTTGAAAGAGGAAACCGAAGAGGACTCTGCCCAACTGTCGCCTACCAGTGGACTCGTCAGGCAGAATATGAAGATAACTGAATCCCCTAAGCTGAGTAAGCCGGTACCCCGTCAAGTGGCGGCGCCGCTCGCAAGGCCGCTGCTAGCTAGCTTGGGAGCGGCGGCGCGCAGCATCATACGCGTCGTGGAAGTGGAAAAGGCGTTTCGTTGTGAATACTGCGAAGACGTATTCTACTTGGAGGATGGCTTGAACACCCACCGGGCGATTCACAAGAACGTGAAGAATCCATTCACATGCCACATCTGCAAAGTCAGCTTCGCTACGTACTCCAGGTGTACTACCCACAAGACAACTCACGGCTTCTACAAGCGCCCCCTCGCCGACGCTAAGGGGCAAGCGTGGGGCCCCAACGCTGGGCCCTCTGCTACTGGAATATTGGGCTACGGCGGATTCCCGGTCGCCAAGCATTTCTTGTGCGAGGACTGCGGCCGCTCTTACCTTCACTGGACGTATCTTCAAGTGCACCGTCGCATGAAGCACGCGAAAAACAATTTCCTGTACAAATGCAACCAGTGCGACCTTACATTCCCGAACAGTTGGAGCTTAGCTTACCACCGGAAGAAGATTCACGGCCAAAGCGGCCAGGGCGAAGCCGGTGCCACCTCCAAGATACTCAGGGAGGATTACAGCGCCCGGCGCGCGCACAGCTGCCCCGTGTGCGCGTACTCGTTCCGCAGCGCGAGCGTGCGCGATGAGCATCTGCGCACGCACACGGGAGAAAGGCCGTTTCCCTGTGATTTGTGCCCGCTCGCGTTTCGCAGGTCAACGGCGATGCGCAACCACCGCCTCATCCACACGGGCGTGCGCGCGTGGGCGTGCCCGCGCTGCCCCAAACGGTTCCGAATACGCTCGGAGCTCAGGACGCACGCGCGCCTCAAGCATCCCAAGCATCTCGCCATTATAGAgATCCTCGGCCTGAATCCGAGTCCCGATGAAGTGATGCAGCATCTAGCAGCGAACAACATCGCGCACGACAAAGTCATCGAGATCACCAAGATGTCCTTTCCGAAGATATGCAAACTTGTTCGATGGAAAGTGACCAGAACGTAA
- Protein Sequence
- MDHADEHKHDLDEGVVYPCPICDYGYAKSGWLKAHLKAAHEKTAPENVKKEVLEDNNNDSEQKSTLASPIARRTRSSTKKADDNPEKEASPQVGLKLERKEEQSAPSNMVIKTEIKQEAIDSSDDEIWIVQTGDETNEQLAHLLHAAKAAKVGQSNERSKKMHKCFSCSRIFATEDSLDTHKCRRRGRKRKSPSKEDNTICVPTKEDFMKRTRRKKTKGPTSDPQIVTCHDCSESFTSKVRLKFHMQFHSPTNMLTPDGRYKCVECVATRPTEACFPAEAALFDHIHFRHHKRRRWQCPVRGCGKTFHLRATLTKHSRTHTDTRRYVCVTCDKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELTPKLVLVCGVCSRAFRDHEDAQAHAAKSSECLEEFTKELKEETEEDSAQLSPTSGLVRQNMKITESPKLSKPVPRQVAAPLARPLLASLGAAARSIIRVVEVEKAFRCEYCEDVFYLEDGLNTHRAIHKNVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPLADAKGQAWGPNAGPSATGILGYGGFPVAKHFLCEDCGRSYLHWTYLQVHRRMKHAKNNFLYKCNQCDLTFPNSWSLAYHRKKIHGQSGQGEAGATSKILREDYSARRAHSCPVCAYSFRSASVRDEHLRTHTGERPFPCDLCPLAFRRSTAMRNHRLIHTGVRAWACPRCPKRFRIRSELRTHARLKHPKHLAIIEILGLNPSPDEVMQHLAANNIAHDKVIEITKMSFPKICKLVRWKVTRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -