Samb080995.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992526.1:21786530-21800398[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.4 8.3e+02 3.0 0.4 1 19 324 342 324 342 0.95 2 18 2.2e-05 0.0053 19.4 1.2 2 23 358 379 357 379 0.97 3 18 1.6 3.9e+02 4.1 0.2 2 23 383 404 382 404 0.87 4 18 0.057 14 8.6 4.5 1 23 409 432 409 432 0.96 5 18 0.0032 0.78 12.6 0.1 2 23 487 509 486 509 0.96 6 18 0.011 2.7 10.9 3.4 1 23 515 538 515 538 0.97 7 18 0.006 1.5 11.7 0.7 1 21 542 562 542 563 0.93 8 18 1.3 3.1e+02 4.4 0.3 2 23 572 594 571 594 0.94 9 18 0.28 70 6.4 1.9 3 23 601 622 601 622 0.97 10 18 0.00021 0.052 16.3 0.1 2 23 635 656 634 656 0.96 11 18 0.0012 0.3 13.9 0.1 1 23 662 684 662 684 0.98 12 18 1.3e-05 0.0031 20.1 2.9 1 23 720 742 720 742 0.99 13 18 0.016 3.9 10.4 0.1 2 23 747 768 746 768 0.94 14 18 0.0048 1.2 12.0 1.1 2 23 787 809 786 809 0.97 15 18 0.0021 0.52 13.1 2.6 1 23 815 837 815 837 0.99 16 18 0.001 0.25 14.2 5.9 2 23 844 865 843 865 0.96 17 18 0.0059 1.4 11.7 0.3 1 23 871 894 871 894 0.87 18 18 0.23 56 6.7 1.6 2 23 900 922 899 922 0.94
Sequence Information
- Coding Sequence
- ATGGAATGGGCAGAGGAAAATACAATATTAGCTCAAGACAGCCTAGAAGCCACTAACATCCAAAGACTGAAGCAGAAACTCACCAACGTCTGTAAAGCGAGAAGGTTTTGTGGCATTTGCTTGGATAGCGAGGGAAAGTTGTGGGCAGTTGGCGCCGAATTCGATATTGCCGTTGGACAGCAGACACATAAAATAATGTTGAAAAACATAATTGATTACATTCTTAATGATGTGGGCCATCAAATTCTAGCAAGCATGCACTTGTGTAGCGATTGCACAGAAAAATCAATACAATCATACCTCTTCATATACAATGCCAAACAACTatcaaaaattatttataaatgtgTGGACGAGCTTAATTCTAAAACTGTTGACGTTATTGATCAGTTGGAACAATTGAGTAATGATTTTAACAACTCCAATATTGTTATTGTACTAGAACAGCATTCTGAAATGTGTCAATACACTGATATAGGTAAGATGACAGAAATTGTTGCAAAGGAAACACCGAAAGAAATTATTGAAGAAGTAGAAATGACTGTGATGGAAAGTAACTCTCTGCAAGTTGAGCCAATTAAACCAATTGATTCATCAATAGAACTCATTGGAATGGAAAATAATGAGCGTGTTATTGTTGAAACTATTGAACCGATCACCGGAAACATATCAGAAACAATTGAAGattatatagaaataaaaaccaCAGAACAGGATGAACTGAAtcaaattgaaattaagaaaataagttTACAAAATATTGTAAAGTCAGAAATGGATGTCACTACGAATATTGAAATCTTAGAGGATATTGTTCATGACAAAGAACAAATAGAAGTATTCTTTTTAGATGAAGATCTGGATGTTTCAGCATCAGAATATTTTAGTGATATAGACGATCAAATTACAGAAGTCAAAACTACAGTTGgtttgaggaaaaagaaaaaactGGAAATGCAATTTCTAACATTTAAATGTAAGAGGTGTAGAGAAATTTTGCCATCATACAAAGGATTGAAGGAACACgacaaaatatgtaaaaaagttaaaattgatCGCAGTAAACCTATTTCATGCAAAATATGCAATGAAACATTTATAACTCAGAGATCATTGAACTCGCATTATAAATCGCACTCGAGATTACGTTGTAAAGTTTGTCAATTTCTTGTACCTCAAGATGAGTTGACAGACCACATGAAAATAAATCATGAAGATTATATACATTCATGTAAATTGTGCAAATTCTTCAGTTTTAATGCTGACACGCTAAAAGCGCATATGAAAAAGAAACACAGTGGCTCCAAATGTGCATTATGTTTTAGAAAGGTCAAAGAAAGTAAACTGAAACTGCATAGATGTAGATACAACTGCGTAGAATGCGTTGATAATGTATGTATTcattataaatacttattgtCTTATAAAGAAcaagttttaaataatgttacgaAAATAAAATGCCCTGATTGTGATTATATATGCCCAAGAAGGGAAGCGTTACTTGGACATGTTAATAGAGAACATCTAGACCACCACCCTTTTACATGTGATAGCTGCTCACAGCAATTTTACTCCAGAACAACTCTGCGATACCATATAAACCGATTTCACAAAGACCGTTTCATTTGCAGCTTCTGTGACCAAGAGTTTAGTAGTTTGTTTACTTTGAATAATCATAAAGAGACTTGTCAGAGTATAGAAAGACCTAACAAATGTGATCAGTGCATTAGTTCTTTTGCAACTTTAGAAGAACTATCTGATCATGTAAAGTTAAGGCACGATATGGTATCCTTAGGTTGCAACTTATGCAAAAGACAATTTTTGTCAAGCACCAAGCTACAAGAACACATGTTTAGAGTGCACAATGGCTTACAAATGAAAAGGAAAAAGAGTTTGTTAGTGTGTCCAGTGTGTGATGTGAAGTTTGAAACCAAAAAGCAGCTTATGGGGCACATAAAAGAACATGGTCCACACGTTAGGTTCCCTTGTAAAAACTGCGATGCTGACTTTGACAATATCAGTAAACTTCTTGTTCACGTACGAATACATTACAATGATGTAATTCAATGTGTTGAGTGCAAGAAGATTATTACCACTACTTTCTACCCTCACCATTTGGTGTATTGCAAACCTGGTGGAGAAGATAAAGATGGGTACACTTGCGAGAGTTGTGGTAAGACATATAACTCAGCCACACAATTGAAGTGGCACCACAAGACTCACATGGAGAAAATACCATGCCCTATTTGCAAGAAGCCAACAAAGCCAGTGTACTTGAAGAACCACATACGATTTATGCATGGCAAAACGAAAAAGACGAAGAAGTTACCGAAAGTCAAAACAAAGACTTACATTAAATGCAACCAATGTGACCACTTGGTATCTAGATACGGAGAGTTAGAGACGCATATGAACAGGTATCATTTGAAAGTGAAGCCTTATAAGTGTAACCACTGCCTGAAGGCATTCTTCGGAAAAGAGAGATTGAGGGACCATCTCATTACTCACACGACAAGTAAAGTATGCTATTGCAGTGTTTGTAATCAGAAGTTTGAAAATAATGCATGTTTAAAACTTCATATGCGTAGGCACACCGGTGACACGCCATACGCTTGTGAGATATGCGGTGAAAGATTTAGAACCTCGAGTATAATGAATGTTCACAAGGTAAAGAAACATACAGAGAGAACTGTGTCTTGTCCCTTATGCGGTACTATGTTCCATTTAACTAGAGAAATGAGAAGTCATTTTAAAAAAGTTCACTGGAAGCAGAAAGGTAAGAAGTTTGACCCGAGGGACGTCAAAGAGTTAAGTCCGGCTTTCTACCATTTGTTTGAAGATGGCAGAGTTCCAAAAGTCGAAGGCGAAGAATTATATATATCTAGGAAGTTTAATGAAAAGTTTGATAGTTAG
- Protein Sequence
- MEWAEENTILAQDSLEATNIQRLKQKLTNVCKARRFCGICLDSEGKLWAVGAEFDIAVGQQTHKIMLKNIIDYILNDVGHQILASMHLCSDCTEKSIQSYLFIYNAKQLSKIIYKCVDELNSKTVDVIDQLEQLSNDFNNSNIVIVLEQHSEMCQYTDIGKMTEIVAKETPKEIIEEVEMTVMESNSLQVEPIKPIDSSIELIGMENNERVIVETIEPITGNISETIEDYIEIKTTEQDELNQIEIKKISLQNIVKSEMDVTTNIEILEDIVHDKEQIEVFFLDEDLDVSASEYFSDIDDQITEVKTTVGLRKKKKLEMQFLTFKCKRCREILPSYKGLKEHDKICKKVKIDRSKPISCKICNETFITQRSLNSHYKSHSRLRCKVCQFLVPQDELTDHMKINHEDYIHSCKLCKFFSFNADTLKAHMKKKHSGSKCALCFRKVKESKLKLHRCRYNCVECVDNVCIHYKYLLSYKEQVLNNVTKIKCPDCDYICPRREALLGHVNREHLDHHPFTCDSCSQQFYSRTTLRYHINRFHKDRFICSFCDQEFSSLFTLNNHKETCQSIERPNKCDQCISSFATLEELSDHVKLRHDMVSLGCNLCKRQFLSSTKLQEHMFRVHNGLQMKRKKSLLVCPVCDVKFETKKQLMGHIKEHGPHVRFPCKNCDADFDNISKLLVHVRIHYNDVIQCVECKKIITTTFYPHHLVYCKPGGEDKDGYTCESCGKTYNSATQLKWHHKTHMEKIPCPICKKPTKPVYLKNHIRFMHGKTKKTKKLPKVKTKTYIKCNQCDHLVSRYGELETHMNRYHLKVKPYKCNHCLKAFFGKERLRDHLITHTTSKVCYCSVCNQKFENNACLKLHMRRHTGDTPYACEICGERFRTSSIMNVHKVKKHTERTVSCPLCGTMFHLTREMRSHFKKVHWKQKGKKFDPRDVKELSPAFYHLFEDGRVPKVEGEELYISRKFNEKFDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682697;
- 90% Identity
- -
- 80% Identity
- -