Basic Information

Insect: Scoparia ambigualis
Gene Symbol: -
Assembly: GCA_963921215.1
Location: OY992523.1:17559348-17571036[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.035 8.5 9.3 0.7 1 23 210 232 210 232 0.97

2 10 0.02 5 10.0 0.4 2 23 259 281 258 281 0.94

3 10 5.4e-05 0.013 18.1 0.2 1 23 304 326 304 326 0.98

4 10 3.7e-06 0.0009 21.8 0.6 1 23 330 353 330 353 0.98

5 10 0.0021 0.5 13.2 2.1 1 23 358 381 358 381 0.94

6 10 0.084 20 8.1 1.7 1 21 387 407 387 410 0.85

7 10 8.8e-08 2.1e-05 26.9 2.7 1 23 417 440 417 440 0.98

8 10 0.0042 1 12.2 6.2 1 23 446 468 446 468 0.98

9 10 3.7e-07 9e-05 25.0 1.6 1 23 474 496 474 496 0.99

10 10 8.4e-05 0.021 17.5 2.1 1 23 502 524 502 525 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.035	8.5	9.3	0.7	1	23	210	232	210	232	0.97
2	10	0.02	5	10.0	0.4	2	23	259	281	258	281	0.94
3	10	5.4e-05	0.013	18.1	0.2	1	23	304	326	304	326	0.98
4	10	3.7e-06	0.0009	21.8	0.6	1	23	330	353	330	353	0.98
5	10	0.0021	0.5	13.2	2.1	1	23	358	381	358	381	0.94
6	10	0.084	20	8.1	1.7	1	21	387	407	387	410	0.85
7	10	8.8e-08	2.1e-05	26.9	2.7	1	23	417	440	417	440	0.98
8	10	0.0042	1	12.2	6.2	1	23	446	468	446	468	0.98
9	10	3.7e-07	9e-05	25.0	1.6	1	23	474	496	474	496	0.99
10	10	8.4e-05	0.021	17.5	2.1	1	23	502	524	502	525	0.95

Sequence Information

Coding Sequence: ATGTTGACCAACCAACCTCCGGTGAAGCACGAAGACCAAGTCGACATCAAAAACGAGCCGAGCGACACGGACGGCGACGCTGATTGCACTGACTACGATCCAGATTATGTGCCTGACGATGGCTTTGGGGTTACCTTGGACGAAAAGCTTTCCTTCGCGGCTCACCTTGAGATTACTGGTGCCAGGGTGCGCAAGTTGATCCACACCATGAAACTTCTTAGAGATGTCGCTGTCAAGCCGCTCTTAAAAACTGTCTATATGGCTTTGTGTGAATCTGTGATCACATACTGTATCGTAGTGTGGGCTTTAGCCCCCAACGCCATTGAGCTGGACGAAGACCTGATAGATGGTGAAGCACAACTCCTTGCGAGGTTTCCCCTCGCGCCTCTGCCCACCCGACGCACCCTGCACAACACTTGTGCGGGGTACGTGAAACATCTGAACTTGCTCAAAGGAATCATGATTCTGCCAAGTACCGTTGCGAAACTTCTAGAAGACGATCAGTACAGATCTAAACAGAATTACAAAAGAGTATTTGTCACTGAGAAAATGGCTCACATCGTCAACGCTTCAACCCTGCTAGAATATTCCAACATCACGCCGTTCAAGAGCAGAAGTCGCAATGGCTTCCCATGCTTCTACTGCAGAAATCTATTCGAGAATCTGGACAGTTTGAGAGATCACACAATGGAACACAATAAGACTGAACTGAGAAAAGTTTTGAGCACATACGGTGCTGAATGTTTGGTAGTCTACGCTGACATAACAAATTTGAATTGCAATATATGCAATGTGAAAATAACAAGCTTGAACGAACTGAAAACACATCTGACTAGAGAGCACAAGAAGAAAATGTATTTAGACTACAACGATAGAGTTATACCGTTCAAACTTTCACCGAACAATGTCTACGAGTGTCAGATATGCGGCTTCAACTTTGAAACGTTCGGCTCAATAGAGAGACATATGAACGTCCACTTCAGGAATTATGTATGCAAAGAGTGTGGTACCGGCTTCGTGACAAAGTATCGATTGAAAGTGCACATTAAGAGTATGCATATAGGGGGCAGTTTCCCTTGTGAGATATGCAAGAAAGTGTTCACGACCCAGCAGAAGCACAAAAACCACGTCGACACAGTCCATAAGATGGTGAAACGGTTTAAATGCACCAAATGTCCGGAGAGATTCTCAGAATACTTCAGAAGGCAAAAACATTTGGTTGAGGAACACGGTGTGGCACCTCTACAATACAAATGCAATGTTTGTGATAAATCATTTGACCGAAGGTATACTCTGTCGAGACATATGAAGCGGGATCACTTAGAAGAGAGAGACTTTCAATGTCACCTGTGTTCGTATAAGTGTTTTACTAATAACGAGTTGAGAGTTCACATGATTAAGCATAATGGAGAGAGGATATATGAATGTTCTGTATGTAAAAAGTCTTATGCGAGAAAGAAAACTTTGAAGGAACATATGAGAATACACAATAATGACAGGCGGTTCGCTTGTGCCGTCTGTGGGCAGGCATTTGTACAGAAATGTAGTCTCAAAGGTCATTTGAAGACTCATCATCATGAGTATAATTTGCAATAA
Protein Sequence: MLTNQPPVKHEDQVDIKNEPSDTDGDADCTDYDPDYVPDDGFGVTLDEKLSFAAHLEITGARVRKLIHTMKLLRDVAVKPLLKTVYMALCESVITYCIVVWALAPNAIELDEDLIDGEAQLLARFPLAPLPTRRTLHNTCAGYVKHLNLLKGIMILPSTVAKLLEDDQYRSKQNYKRVFVTEKMAHIVNASTLLEYSNITPFKSRSRNGFPCFYCRNLFENLDSLRDHTMEHNKTELRKVLSTYGAECLVVYADITNLNCNICNVKITSLNELKTHLTREHKKKMYLDYNDRVIPFKLSPNNVYECQICGFNFETFGSIERHMNVHFRNYVCKECGTGFVTKYRLKVHIKSMHIGGSFPCEICKKVFTTQQKHKNHVDTVHKMVKRFKCTKCPERFSEYFRRQKHLVEEHGVAPLQYKCNVCDKSFDRRYTLSRHMKRDHLEERDFQCHLCSYKCFTNNELRVHMIKHNGERIYECSVCKKSYARKKTLKEHMRIHNNDRRFACAVCGQAFVQKCSLKGHLKTHHHEYNLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00682693;
90% Identity: iTF_00682693;
80% Identity: -