Samb073539.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scoparia ambigualis
Gene Symbol
-
Assembly
GCA_963921215.1
Location
OY992523.1:18591132-18609946[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.015 3.8 10.4 0.9 1 23 229 251 229 251 0.96
2 16 0.0019 0.45 13.3 0.1 3 23 281 302 279 302 0.94
3 16 0.00062 0.15 14.8 0.3 2 23 323 345 322 345 0.96
4 16 0.05 12 8.8 2.2 2 19 351 368 350 373 0.91
5 16 0.011 2.8 10.9 1.1 1 23 378 401 378 401 0.95
6 16 0.83 2e+02 5.0 0.5 2 23 404 426 403 426 0.91
7 16 0.019 4.7 10.1 1.4 2 22 433 453 432 453 0.94
8 16 0.0034 0.84 12.5 0.5 1 23 510 533 510 533 0.92
9 16 0.35 85 6.2 0.0 3 23 562 583 560 583 0.94
10 16 0.018 4.4 10.2 1.2 2 23 606 629 605 629 0.96
11 16 0.00052 0.13 15.0 0.6 3 20 636 653 634 657 0.90
12 16 0.013 3.2 10.6 0.4 1 23 662 685 662 685 0.97
13 16 0.00051 0.13 15.1 0.2 2 23 691 713 691 713 0.92
14 16 0.00014 0.034 16.8 4.7 1 23 717 740 717 740 0.97
15 16 0.00049 0.12 15.1 0.6 2 23 747 768 746 768 0.96
16 16 0.0051 1.2 11.9 2.9 1 23 774 796 774 796 0.97

Sequence Information

Coding Sequence
ATGGAGTTcgacgatatcgtggtgaaggaAAGCCCAGGGCTTTGCCGGTGTTGTTTGTCTGAAGGATGTTACAAAGACATGGGCACCGAATATGCATGGATGAATGAAAACGAAGTTTACGCGGACATGTTATTGGAGTGTTTCGATATTAGTATATCCCAACACAACGATGGGCCCAACGGTCCCAACCGTCTCATCTGTGAAGTGTGTATCACACGACTGCGTGATGCTTGCTACTTCAAGAAACAAGTGCATGCTTCAGAGAAGAAGTTTGTTAATATGCTCGGAAGAGGATTATTTGCACCTAAAACCGAACTTTTGTATCAATCACAATTGAAAGCGGAGACGTCCCAGGTGGAAGTTACCCTGGACGCCGATGTGGAGTACTTGGATGATGATATAGACTATGTTGATGatGACACATTTAAAGAGGAAGAGCCCATGGCCACCGTGTCAGCAGACCCGTTACCTGTTAGAGGCAAACGGGGACGTCCACGTAAAGGCACCACCAAAACAGCCAAGAAAGTCAAGGTGGAAACCAAACCGAAGACCTCCAAGGCGCTCGTTAAAGGTGTTAAACTGCGGAAATACATGGGCTGCGAATCGTCCTCGATGCGCAGAAGAAGAAACTTCCAACTGTTGTTCAACAACACGTCGATAATACCGTTTAAGTGGCGCGGGAAGTATCTGTGCTTTTACTGTAGCAAAGACGTCGCGGAATATTCAGATTTGAGGAACCATACAAAATCGCACGGCAATTGCTCTATAAAAGATCATTCGCTGATGGTCTTAAGAGGTGGTCAGAATATGGAGATCAAAATTGATGTGTCCGAAATAGCTTGTGACATTTGTCATGAACCCTTTCCCAATTTCGATGAGCTCATAACACACCTTTATATCAAACATAAATTAGAGTACGATCGTGAAGTAGATATGGCTACAGAGGAATATAGACTGGCGGATCTCTCTTGTGTTCAATGCGGCGAGAAATTCTCCTATTTCGGCTATTTGGTGTCCCATATCAATACGAATCACCCGAAGAATTGCCTCGTTTGCGACAAATGTAATCAGAAGTTTAACAAGAGGAGAGATCTTTTCTCGCATGATAAGAATTATCATAGGGAGGGAGGTTACCAGTGCGAGCTGTGTCCACAAAATTTCAGTTCTCTGAACATTCTGCGtaaacacaaaaacaataggCATTTCTCTAGGTGCAACATTTGCCATTTGAAACTGCCAACAGCCGCCATGAAGCAGAAGCATGTGGAGTTGGAACACCCTGATGACGGTTCGCTGCAATGCGGCAATTGTTTCAAAGAATTTCACACGAAACAAGGTCTCAAAATGCATGTTCGCAAATGTAAAGGAGATGACGAAGCATTCGAGCTAGCTATAAAAAGCGAAGGAGATATAGAAGATGATTACATAGAACCTGTAAAGAGGCCCAGTGTGAAACAGATCAGGGAGAACATTGTGATTGTCATAAACATGTCGACAGCAATACCTTTTAACTTCTACAAGAATAAGTTCAACTGTTTCTATTGCTCGAAAGACTTTGCCGATTCAGACTCTATGAGAGAGCACACAGTGATTGAACACCCTGTCTGCGATGTAAAAGAGAAATGTATCCGCAAATGCAGGGAGTCCGTAGCTTGCGTCAAAATTGACGTATCAACGCTCGCTTGCAAGGTTTGCTTCGAATCTATGAGTGATTTGGACGATTTGTTAGATCACTTGATCATAAAACATGGCGCTAGTTACGACAAATCTATCACGACCTGCTTGCAAGCGTACAGACTGATCAAAGACCACATGGTATGCCCTCATTGCCCGAGCGAAGTGTTTCGATTCTTCGGCACTTTATTGAAACACATGAATAAGAAACATACGAACAACAATATTATTTGCGTTTACTGCGGTCAATCTTTTAGGAGGGATCAGAATTTGAGAGTGCACATATGGAGGCATCACAGAGatggtagatttaagtgtagcATTTGTGACGCGGAGTGTAGTATACCGTCCAGACTTTATATGCACATGGCGAAAGCGCACGGCGTGAAAGCGGCTAAATGTCCTAAGTGTCCAGAGAGTTTTGCTACGCAGTACTTACGGCAGAAGCACTTGATCGATGCCCACGATTCTGGACACAAGTGCTCCTACTGTGGTAAATTGTTTACAAGGAACTCCTTCATGCGAGATCATGTAAGGAGGACGCATTTGAAAGAGAAAAATGTGGAGTGCTCAATTTGTAGCATGAAGTTTTTCAACAATATTCTGCTTCGACGACATATGGTGAAGCACAGTGGCGAGAAGAATTTCCATTGCGATATGTGTGGAGAAAGGTTCTTTTGGAAGAAAAGTTTGAGGACGCACATGGCTAGGCATAACAGAGATCCTTACTCTAATCTGCATTGA
Protein Sequence
MEFDDIVVKESPGLCRCCLSEGCYKDMGTEYAWMNENEVYADMLLECFDISISQHNDGPNGPNRLICEVCITRLRDACYFKKQVHASEKKFVNMLGRGLFAPKTELLYQSQLKAETSQVEVTLDADVEYLDDDIDYVDDDTFKEEEPMATVSADPLPVRGKRGRPRKGTTKTAKKVKVETKPKTSKALVKGVKLRKYMGCESSSMRRRRNFQLLFNNTSIIPFKWRGKYLCFYCSKDVAEYSDLRNHTKSHGNCSIKDHSLMVLRGGQNMEIKIDVSEIACDICHEPFPNFDELITHLYIKHKLEYDREVDMATEEYRLADLSCVQCGEKFSYFGYLVSHINTNHPKNCLVCDKCNQKFNKRRDLFSHDKNYHREGGYQCELCPQNFSSLNILRKHKNNRHFSRCNICHLKLPTAAMKQKHVELEHPDDGSLQCGNCFKEFHTKQGLKMHVRKCKGDDEAFELAIKSEGDIEDDYIEPVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFADSDSMREHTVIEHPVCDVKEKCIRKCRESVACVKIDVSTLACKVCFESMSDLDDLLDHLIIKHGASYDKSITTCLQAYRLIKDHMVCPHCPSEVFRFFGTLLKHMNKKHTNNNIICVYCGQSFRRDQNLRVHIWRHHRDGRFKCSICDAECSIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIDAHDSGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCDMCGERFFWKKSLRTHMARHNRDPYSNLH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00013343;
90% Identity
-
80% Identity
-