Basic Information

Insect: Scoparia ambigualis
Gene Symbol: PGBD4
Assembly: GCA_963921215.1
Location: OY992515.1:20736173-20749451[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00019 0.046 16.4 5.8 1 23 811 833 811 833 0.92

2 10 8.6e-06 0.0021 20.7 1.4 1 23 838 860 838 860 0.99

3 10 1e-06 0.00024 23.6 2.6 1 23 865 887 865 887 0.99

4 10 0.001 0.26 14.1 0.0 1 20 891 910 891 912 0.94

5 10 1.6e-05 0.0038 19.8 0.5 2 23 924 945 923 945 0.97

6 10 6.9e-06 0.0017 21.0 3.2 1 23 951 973 951 973 0.99

7 10 0.00025 0.061 16.1 0.7 1 23 979 1001 979 1001 0.98

8 10 5.4e-05 0.013 18.2 0.8 1 23 1007 1029 1007 1029 0.96

9 10 0.00028 0.068 15.9 1.3 2 23 1036 1057 1035 1057 0.96

10 10 0.0013 0.33 13.8 4.1 1 23 1063 1086 1063 1086 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00019	0.046	16.4	5.8	1	23	811	833	811	833	0.92
2	10	8.6e-06	0.0021	20.7	1.4	1	23	838	860	838	860	0.99
3	10	1e-06	0.00024	23.6	2.6	1	23	865	887	865	887	0.99
4	10	0.001	0.26	14.1	0.0	1	20	891	910	891	912	0.94
5	10	1.6e-05	0.0038	19.8	0.5	2	23	924	945	923	945	0.97
6	10	6.9e-06	0.0017	21.0	3.2	1	23	951	973	951	973	0.99
7	10	0.00025	0.061	16.1	0.7	1	23	979	1001	979	1001	0.98
8	10	5.4e-05	0.013	18.2	0.8	1	23	1007	1029	1007	1029	0.96
9	10	0.00028	0.068	15.9	1.3	2	23	1036	1057	1035	1057	0.96
10	10	0.0013	0.33	13.8	4.1	1	23	1063	1086	1063	1086	0.96

Sequence Information

Coding Sequence: ATGTCTTCGGAATGTTTAATAAAACAAGAACCTTCTTCGCCAACACCAGGGAATGATTACAAAAGTGAGCCAGCAAATTCGGTGCCACTTTTCGTCAGTGTGAAACAAGAAGCTATTGTAGATCAGCCTGATGTAAGTTCTGACGTGAAGAAAAAAGGAAAAGTCGTAACGATGGATGTGTCTGAAAAAGAAGCGGAAGAAATGTTGGAAGTAGATTCCCTCCAAGACCAGCACGCGAAGAGGTTGAAATTGAATGGTCAAAGACGTTTTTCCCAAAGAACGCTAACTTCTAACGCTTCTACAGATGTAGGAAGCGTAAATGATGATATACTTCCATCTACTTCCGGTGTAACAGCGTCTGTACTTGAGATATCTGAAGGCAGTGATCTAGATAGTGACTGCGATGAAGAGTTTGACATATCTGCAGAAGCTACTGTTTTTACTGATGTTAGGGACATACCCGATAACGAAGAGTTAGAAGAGCCCAGTCGTGATGTAATAAACAGCATTGAGAAAGGAATTGACGACGAAGCGGGTCGTCTTCTTGGCACATCGTCAACCTTCACATGGGTTAAAGGTTATGAATCGTTTAAGGGATTACCTGAAAAGTTTTCAGGTCCCACTCCTGGGCCGATAAGAGACTACGATTCAGCCTATGATGCTTTCACAGATATATGGGATAAAGATATAATAGAGCTAATCGTCCGTGAAACTAACCGGTATGCCCAGCAGACGATCGATGCTTTGAAATTCAAAGAGGAATTAAAACCGTCGTCGCGGCTGCGTGATTGGACTGACACTAACGTAGACGAGGTTATGGTTCTTTTTGGGGTGTTCATGTTTATGGCGCTAGATCCGCGGACAGCACAGGACGAATATTGGAAGACGGGCGTTCTGGAAATGCCAAAATTTAAACATCTTATCACCTTTAATCGTTATTTGTTGCTGTGTAAGTTTCTTCATTTCGTTGACAACACTGATGCGGGTCAGAGATGGTACCCAAATGGAGAAACGACCTCAGCAACAGAATATTTGTCCCGGAAATTATTTCAGCTGACGCCTATAACTGATCACCTTGAAAAGAAATTTGATACCCTTTATAATCTAGAGCGTAATATTGCCATTGACGAGTCTTTAACCTTATACAAGGACCGTTTATCTGGGGTCAAATCGATAAGGTCGAAAGCGTATCGGATTGGAGTCAAGTCTTACGAGCTATGCGAATCGCAGACAGGCTATATGGCTCGATTCCAAATCTGTACGAGTAAGGCAGAACATGCTAACAGTGATCCATCAGTTAGTGTCTATCTAGGAGGCAAAACTACCAAAGTGGTCCTTAAACTTTTGCAAGGTCTTGATCGTAGGGGTCATTGCGTAACGATGAACATTTTTTACAATTGTCCAGCGTTAGCGCGGTATCTCAAGGGCATGGGCTTTGACTGTATAGGGACTCTGCGTCGTTATGTGCCTAACGACATCGCAAAGGTAACGAAAGAATTGCCTAAAGGTACTTTAACATCTCGCCAGTGTGGAGATGTTTCCTTCGTAGCGTGGAAAGACACAAAACTGGTGAATATTATATCCACATATCACGACGACAGTGCCATTCCTATAAAGAAGGCAGGTAAAACTGTTGTCAAGCCGATATGCGTGATAGATTACGACAATTCCATGGGGGGGATCGATGTCAAAGATCAGAATCTCGCCATGTATTGGATGGACCGGAAGAAAGGTACTAAATTATGGTACATTAAGATGTTTAGAAGAGTTTTAAACGTGAGCATACATAATGCTTTTATCATGTACGCGTGTTGTTTAAAACGGCGCAATGAAGCGGCTATCAGTCATCGTGAGTTTCGTTATGAGCTGGCTCAGTCCCTTGTTGAGAAGCATGGCGTCTATCGACAAGAGATAAGACAAGATATAGTAGGGCTACACATGAGGCTAAGACGCGACGTTGTTCACGAGCCCCTTTATACTAGTGGAAACAATTGCAGGAAGCGCTGTGTCGTTTGCTCTCGGCAGAAGTGTAACAAATTGGTCCACTCACAATGCTGCACCTGTGACGTTTTCCTGTGCTTCCAGGACTGTTGGAAGAAGTGGCACTCTTCTGAAAATTTGCCAGGACAAGAAATACGTTCTAGAAAAAGGAAGCGTATTGAAGTGAAGGTTGAACCCCCGGAAGAAATATTTTTGCCCGCGCCAAGTTGTATAGTTGGAACTGGAACCGCTGAACACGTGTCAAATGAGAAAGATTCAACTGCCGCCTGGGTACAACAGCCTCCGAAGATAACCgttaaaatagaaaaagtagAAGCAGTAGAACATTTAGAAGTGGAAGTGAACCCAGCGGATGCTCAGTGGGACGTaaatgaagataaaaattctGCGATTGAAGAGACTGCTCATTGTGGATCAGAAGGCTTCAAATATTCCTGCTCTATCTGCAACAAAGCTTACTCAAGAAAAAGCAACCTTCACCGTCACTGCGATACCCACGCCAAACAGCAATTCCAATGTGAAGTCTGCTTAAAGAAGTTTAACACTCCGAAACTGTTGACTAGTCACATGAAGAGTCACAGGCAGAAGGTGTATCAGTGCAAATATTGCGAAAAATCGTTCATGACAACGTCGAATTTGAGTCAGCACCAACGGGTTCATGTTAAACCGTTCTCTTGTGACGTATGCGGTCGAACATTCGCTGTAAAAGCTGCTTACATTAGACATGTAGAAAATAAACTATGCAAGTTACCAACAGACAAACTATTAACCTGTGATATATGCGGTAAAGGTTTCAAGCGTGACATCTTGTTGCGAAGTCATCTACGTAGACACACACCCGAGAAACCGTACACGTGTGACATTTGCAAGATGAATTTCAAACACAAGTCCACACTGGTCCGCCATATCCAAATGCATTCCGATTATAAGCCTTACGCTTGCAATATATGCGGTAAACAGTTCACACACGTTGGTATGATGAGACCCCACATGCGCATGCATACTGGCGAAAAGCCTTTTCAATGTCAAGTGTGTTGGAAAAGTTTCGCCTATAAGTACAATATGGAGCGACATGCGGTGCGACACGAGAAAGAGAAGAATTTAACGTGCAACATTTGTAACAAGAAGTTTCCCAAAGAGAGCAGACTGAAATACCATATTACGATGCATACAACTGTCAAGCATTTCGCATGCTTCGTGTGTCCAAAGAAGTTTTCTCATAAACAGAATATTGTGAGGCACTACAAAAGGAAACATCCAAACGAGAAATACGAAACCAACGATACGGACGCCAGTGTGGCTTTAAAAGTTTGGGATGAAGttgtcaataaaaagattagagTATTAGATAAACTGCCGGAAGAAACTGTTTCTTTACCAAAGAGTATACCTATTACGATGGCAAAAAAAATTGAAGTAGGAAAGGAAGAAGAGTCTGAATATATCGTACCAGACAGTATGGTGCAGCAGATGAAAGATCCTGTGGTGACGATTAAAGTGGAGAAAATGGATAGTGAAGAGAATTCGTTTCAAGATTGA
Protein Sequence: MSSECLIKQEPSSPTPGNDYKSEPANSVPLFVSVKQEAIVDQPDVSSDVKKKGKVVTMDVSEKEAEEMLEVDSLQDQHAKRLKLNGQRRFSQRTLTSNASTDVGSVNDDILPSTSGVTASVLEISEGSDLDSDCDEEFDISAEATVFTDVRDIPDNEELEEPSRDVINSIEKGIDDEAGRLLGTSSTFTWVKGYESFKGLPEKFSGPTPGPIRDYDSAYDAFTDIWDKDIIELIVRETNRYAQQTIDALKFKEELKPSSRLRDWTDTNVDEVMVLFGVFMFMALDPRTAQDEYWKTGVLEMPKFKHLITFNRYLLLCKFLHFVDNTDAGQRWYPNGETTSATEYLSRKLFQLTPITDHLEKKFDTLYNLERNIAIDESLTLYKDRLSGVKSIRSKAYRIGVKSYELCESQTGYMARFQICTSKAEHANSDPSVSVYLGGKTTKVVLKLLQGLDRRGHCVTMNIFYNCPALARYLKGMGFDCIGTLRRYVPNDIAKVTKELPKGTLTSRQCGDVSFVAWKDTKLVNIISTYHDDSAIPIKKAGKTVVKPICVIDYDNSMGGIDVKDQNLAMYWMDRKKGTKLWYIKMFRRVLNVSIHNAFIMYACCLKRRNEAAISHREFRYELAQSLVEKHGVYRQEIRQDIVGLHMRLRRDVVHEPLYTSGNNCRKRCVVCSRQKCNKLVHSQCCTCDVFLCFQDCWKKWHSSENLPGQEIRSRKRKRIEVKVEPPEEIFLPAPSCIVGTGTAEHVSNEKDSTAAWVQQPPKITVKIEKVEAVEHLEVEVNPADAQWDVNEDKNSAIEETAHCGSEGFKYSCSICNKAYSRKSNLHRHCDTHAKQQFQCEVCLKKFNTPKLLTSHMKSHRQKVYQCKYCEKSFMTTSNLSQHQRVHVKPFSCDVCGRTFAVKAAYIRHVENKLCKLPTDKLLTCDICGKGFKRDILLRSHLRRHTPEKPYTCDICKMNFKHKSTLVRHIQMHSDYKPYACNICGKQFTHVGMMRPHMRMHTGEKPFQCQVCWKSFAYKYNMERHAVRHEKEKNLTCNICNKKFPKESRLKYHITMHTTVKHFACFVCPKKFSHKQNIVRHYKRKHPNEKYETNDTDASVALKVWDEVVNKKIRVLDKLPEETVSLPKSIPITMAKKIEVGKEEESEYIVPDSMVQQMKDPVVTIKVEKMDSEENSFQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -