Samb076990.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- Znf296
- Assembly
- GCA_963921215.1
- Location
- OY992525.1:1213477-1224934[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.5e-05 0.011 18.4 2.0 3 23 140 161 139 161 0.93 2 15 2e-05 0.0048 19.5 1.4 1 23 168 190 168 190 0.97 3 15 0.0029 0.72 12.7 4.6 1 23 194 216 194 216 0.99 4 15 0.00024 0.059 16.1 4.1 1 23 221 244 221 244 0.97 5 15 0.049 12 8.8 0.2 3 23 251 272 251 272 0.95 6 15 0.55 1.3e+02 5.5 0.3 1 19 280 298 280 300 0.94 7 15 9.1 2.2e+03 1.7 2.6 3 12 308 317 301 328 0.76 8 15 0.0054 1.3 11.8 0.0 1 20 335 354 335 356 0.93 9 15 0.015 3.7 10.5 0.1 3 23 367 388 366 388 0.95 10 15 0.0031 0.76 12.6 0.5 1 23 393 416 393 416 0.96 11 15 4.2e-05 0.01 18.5 1.2 2 23 459 480 459 480 0.96 12 15 0.0021 0.52 13.1 1.1 1 23 486 508 486 508 0.97 13 15 5e-06 0.0012 21.4 1.8 1 23 514 536 514 536 0.98 14 15 8.4e-05 0.021 17.5 4.2 1 23 542 564 542 565 0.94 15 15 0.27 67 6.5 0.7 1 23 585 608 585 608 0.95
Sequence Information
- Coding Sequence
- ATGCAAAATGTAATCTTAAGGGCAATGGCTCAGTTAACAGCAGCATACATCGGTTCAGTAGACCGTGACTATTACAACTTGAATCTGAACCTTTCAATATCCGAACCGATGATAATTGGCAGTGATATCACAGAAGATGACATTCCAATCCAGACTTTGGAGGATGAAGTTAATGTCAAGTCGGCAGATGACAACGTAGTCATGTCTGAGAAAGCAGACTATGAAACTGTGTCCGCTGACGTAGGCGATGACGATGACGATGAACAAGTGCCTGCCGAGAGAGAAAGGAAACCTTTCAGCTTTCAGGACCTTGAGAGCAACTTCAATTTCACAATAAAAGTGCTGAGTAAAGAGCAACAGATCTTAGAGGTCAACAATCGGAAGAGATCAGCTGCCTTTGTGAAATCTAAGAATGCATGCAATGACTGCGGAAAATGCTTTTCGAGTGCTGACAAGTTGTCAAACCATTTTATGTTGTTCCACAATCCCAATATAGGACACTACTCCTGTGAGCTGTGTAACACAAAATTTGAGAGCTGGTCAATGTTAAGAAAACATCTGTTCTCACACAGATACCGTTTCAAGTGTAATGAGTGCTCGTTTTCTACGAAGCGTCAAaaatcggtcaataatcattatAAGAAACACCAGGGTGTCCAATTCTGTTGTGAGCACTGCGGAAAAGGTTTCAGTGTGAAAAACTCGTACTTAGCCCATTTGAAGAAATTGCACCCTTCTCAAGACAACTGGTGTAGATACTGCGGTGAATCGTTTATGAGTGATATCGGTCTGGAGAATCATAAGGAAATGTCACACTACGATGTGCAAAGCGATCAACACGTTTGCTTGACTTGTGATATAAATTTTATGAACGACAAAGCATTGCAGACCCATAACAGTTATAGTTGTTCGGAGAATCCTTGCTTTCATTGCGGCCGTGGCTTTGTGGAGGAACAGATACTGCGTTGCCACCTCTTGAGTCATCgtaaaaatggtaaatcatttaGGTGTATCATTTGTGGTGTTGTGTTTGAGAATTCGAAGAGTTTAAATACTCATTTGGAGTGGAGTAAGGGAGTGTGTTACAGGAAAAAGTTTTGCACTAAATGTGGGAAACTCTTTGCCACCGAAGAGGCGGTGGAAGAACATGTTTTGAAAATGCATTCGGATAAGAACTTCGTATGTGCTGTGTGCGGCCGCACCTACCAAACCGCTAACAAGCTAGACCAGCACACCAAGCAATCCCACAGACGCAAGAGCGAAGTGCGACGCCCCATAGGCAACAAGCAATGGAGTTTGCGCACCGAGGGGGGGGAGACCGTCATAGTGGCTGAGGGGGAGGAGCCCGAACCGAAGGCGAAGGGGGGGCGGAATGTGTGCGAGTTCTGCGAGAAAGCGTTCTCGAACAGTATCCACCTGAAGATTCACCGGCGCGCGCACACCGGCCAGAAACCGTACAAGTGTCCTATATGCGCGAAGGCCTTCGCCATTAAGGCGCTGTGCAATCATCACATTCGGGTGCACACCGGCGAGCGGCCGCACAAATGCTTGTATTGCCCCAAGACGTTCAAAAGCAAACCCAATGTCGTCAGGCATATGTTGATCCACACCGGCGAGCGCAAGCACATCTGCAATATATGCAGCAAGGCGTTCCGCACCTCCACCGACGCTAAAACGCACATCAGGAAACATCACAtggcgcccgccgcgccgcgcaaGCGCAAGCCGCGGACACCTAAGGACAAGCGGAAACACAAATGTGTGTTATGCAAAGAAGCCTTCCTCACTTCGTCTGAAGCAACGTTACATTTGAAACAAGCTCACATGACGGCCCGGCCTCTAGTACTAGTCagcaaattacaaatacaataa
- Protein Sequence
- MQNVILRAMAQLTAAYIGSVDRDYYNLNLNLSISEPMIIGSDITEDDIPIQTLEDEVNVKSADDNVVMSEKADYETVSADVGDDDDDEQVPAERERKPFSFQDLESNFNFTIKVLSKEQQILEVNNRKRSAAFVKSKNACNDCGKCFSSADKLSNHFMLFHNPNIGHYSCELCNTKFESWSMLRKHLFSHRYRFKCNECSFSTKRQKSVNNHYKKHQGVQFCCEHCGKGFSVKNSYLAHLKKLHPSQDNWCRYCGESFMSDIGLENHKEMSHYDVQSDQHVCLTCDINFMNDKALQTHNSYSCSENPCFHCGRGFVEEQILRCHLLSHRKNGKSFRCIICGVVFENSKSLNTHLEWSKGVCYRKKFCTKCGKLFATEEAVEEHVLKMHSDKNFVCAVCGRTYQTANKLDQHTKQSHRRKSEVRRPIGNKQWSLRTEGGETVIVAEGEEPEPKAKGGRNVCEFCEKAFSNSIHLKIHRRAHTGQKPYKCPICAKAFAIKALCNHHIRVHTGERPHKCLYCPKTFKSKPNVVRHMLIHTGERKHICNICSKAFRTSTDAKTHIRKHHMAPAAPRKRKPRTPKDKRKHKCVLCKEAFLTSSEATLHLKQAHMTARPLVLVSKLQIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -