Samb066590.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992520.1:31689222-31704783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.69 1.7e+02 5.2 0.0 1 23 171 194 171 194 0.92 2 15 0.022 5.5 9.9 0.7 1 23 241 263 241 263 0.95 3 15 1.3 3.2e+02 4.4 0.2 6 23 275 293 275 293 0.95 4 15 2.2e-06 0.00054 22.5 3.1 2 23 353 374 353 374 0.97 5 15 2.4e-06 0.0006 22.4 0.8 1 23 381 404 381 404 0.95 6 15 0.37 90 6.1 0.1 1 23 410 432 410 432 0.93 7 15 0.00066 0.16 14.7 0.6 1 23 438 460 438 460 0.97 8 15 0.00051 0.13 15.1 1.2 1 17 466 482 466 483 0.95 9 15 0.013 3.2 10.6 1.5 1 23 631 653 631 653 0.97 10 15 0.00052 0.13 15.0 3.9 2 23 660 682 659 682 0.92 11 15 2.4e-06 0.00058 22.4 3.1 1 23 688 710 688 710 0.98 12 15 5.9e-05 0.015 18.0 0.3 1 23 716 738 716 738 0.97 13 15 0.02 4.9 10.1 0.5 3 23 746 766 745 766 0.98 14 15 0.0091 2.2 11.1 2.2 1 23 772 794 772 794 0.95 15 15 0.0058 1.4 11.8 0.6 1 23 800 822 800 823 0.95
Sequence Information
- Coding Sequence
- ATGAATATCGAAACAGAACAAATTTTTATTGTCAATTCATCGGATACACTAACAGCGGTGCCGAAAATAGGCGAACCCGATAGTTCAACACAAGCAAATGCAGATTTCTCAACAGTATGCAGAACCTGTGCCATGGTTACAGAGTTTGTTATACCCATATTCGATGGAGAAGGTCTACAGAACAATTTGGCCgagaaaataaacaaacactTGCCAATCCAGGTGAGCATGCAAGACCTGCTGCCGCTGGTGGTGTGCTACCAGTGCGCGAGCACGCTGCTGGCGTGGCACGAGCTGGTGCAGTGCTGCGCGCAGGCCGACGCCGCGTTGCGGGCGCGGCTGCAGCCCGAGCCCCCGCAAGAATCCAAATTAAATAGTACAAATGCAATTCAAAACTCTGAACAAGTACAACAGCAGAAGTTACGAACCGAATTTAGTAGTATGTTAAAAAACGTATTGGTTGAATATTTGCCCAGCCAGTCGGCCGCTTGCGAAGATCTCGATTATGAGTATGTGTGCCAGCAGTGCCCGGCGTCGCTGAGCAGCGTCGCAGCGCTGGGCGACCACCTGCTCGCAgcgcacgccgccgccgccgccggccgcgaCGCGGTGAAGCAATTCATCAATAACAATGTAACATTCGAAGAAATGTTGTTTTCCGATGATTCAGACAGAGACGTCACATCGGAAACTACCGATAACCCTATGGTGTTGCCGAATTTCTTATGCCCCTATTGCGAGAGTATTTTCTCATCTACGACGCGCCTGATCTACCACCTCAACCGGCATGCAGAAGCGTCCATGGACGACGGTATGGTGTGCTGCGAAACCACTTACAACAACAAGAAAGCGTTCGTGCAGCACTTGCAGCAGGAGCACGTGCAGCGCGCCGCaggcggcggctgcggcggcgcgCTGTGCCGGAGCTGCGGCTTCCAGGCGCAGGATCCGCGCGGCCTGCACACACACGTCACCGAGGCCCACGACGACAAAAAACCAAGTCGCACAAAACAGAAAGCAGAGCCTAGCCCTAAAAATCAGAAATACATCGCCGCCGTGTGTCCCGAatgcaataaatgtttctcaAACAAATACAACATGTTCGTTCACATGAAGCAGCACAGCGCGACCGGAGCGACGTTCCCTTGCGACAAGTGCAAGAAGAGTTTTACCAGCCGAGGCAATCTGCAGCAACACGCCAAGCTAGCGCACGGCGGGCTGCTGCGGTTCGTGTGCGCGTTCTGCGGCGAGGCGTTCGGCTCGCGGCTGGCGCGCGACGTGCACGCGCGCCGCCACTCGGGCGCCGCGCCCTACGCCTGCACGCGCTGCCGCAAGGCCTTCCGCGCCAAGGACAGCCTCGACCGCCACCTCGACATGCATCTGGACGTGAGGAAATACGAGTGCCATCTCTGCCCGAAGAAATTCAGAAAGTCGTCCCATCTCAAGTGGAAGACCTGCTCGGTCGGGGTAAAACCCGATCTCTGGAGGAACGGTGGCACGGTAGAGATAGAACGGGACGCAAATTACAAAAACCACTACGATTGCGATAACGACCCCGACACCGGCGGCAGCTACGGGTCCGAGAACGAGGACGACAAACCTCTGTCGAGTTTAGCGAACGAGAAGGCAGCAGAACTGTACGGCACCTTCTACAGAGCCTTGCTAAACTTTAGAAATCATTTCGTGGAGAAGCACGATCTTCGAGATCCTAGAGACTCCGCGTCGGCCGACTCGAGCGACTCAGAAACGTCGAGCGAGCGGAACGAGCCCGACCCGAACGTCGACAGCTACGACGACCTCTCGCACTGCAACATGCGCAAAGACCGCATGGACGAGGCGACGCGACTGGAGCTCGCCGCCGTGCGCACGCGCGTCGGCGGCAAGGCCTACTACACGTGCGGCGAGTGCGGCAAGCGGCTCAGCTCGCCGCACACCTACGTGTTCCACACGCGCATCCACTCGGGCGCGCGGCCGTGCGTTTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCGCACGCGCTGCGCCGCCACCTCACCGAGACGCACGAGCGCGCGCGCCGCCACACCTGCCGCCTCTGCGGCAAGACCTTCGCCAACTCGCAGAACCTCAAGCAGCACACGCGCATCCACACGGGCGAGCGGCCCTACGCGTGCGGCGCGTGCGGCAAGCGGTTCGCGCAGAGCGGCTCGCTGCACGCGCACGCCAAGACGCACAGCGCGCTGCTGCCGCACGGCTGCTGCGAGTGCGGCGCGCGCTTCCGGCTGCGCGCGGGGCTGGCGCGCCACGCGCTGCGCCATACGGGCGAGCGCGCGCACGCCTGCCCGCGGTGCGCGCGCACCTTCAAGCTGCGCCACGAGCTGACGGCGCACGCGCAACAGCACGACGGCGCGCGCCCCTACGCCTGCAGCGGCTGCCCCGCCACCTTCCGgctgcgccgcgccgcccgccagcACGCGCGCACGCACCACGCGCCGCTACCAGCCCCGCCGCTCGCGCCGCAACCCGGGCCCTCCTATGCCCAGCTCGAAAACTATTAA
- Protein Sequence
- MNIETEQIFIVNSSDTLTAVPKIGEPDSSTQANADFSTVCRTCAMVTEFVIPIFDGEGLQNNLAEKINKHLPIQVSMQDLLPLVVCYQCASTLLAWHELVQCCAQADAALRARLQPEPPQESKLNSTNAIQNSEQVQQQKLRTEFSSMLKNVLVEYLPSQSAACEDLDYEYVCQQCPASLSSVAALGDHLLAAHAAAAAGRDAVKQFINNNVTFEEMLFSDDSDRDVTSETTDNPMVLPNFLCPYCESIFSSTTRLIYHLNRHAEASMDDGMVCCETTYNNKKAFVQHLQQEHVQRAAGGGCGGALCRSCGFQAQDPRGLHTHVTEAHDDKKPSRTKQKAEPSPKNQKYIAAVCPECNKCFSNKYNMFVHMKQHSATGATFPCDKCKKSFTSRGNLQQHAKLAHGGLLRFVCAFCGEAFGSRLARDVHARRHSGAAPYACTRCRKAFRAKDSLDRHLDMHLDVRKYECHLCPKKFRKSSHLKWKTCSVGVKPDLWRNGGTVEIERDANYKNHYDCDNDPDTGGSYGSENEDDKPLSSLANEKAAELYGTFYRALLNFRNHFVEKHDLRDPRDSASADSSDSETSSERNEPDPNVDSYDDLSHCNMRKDRMDEATRLELAAVRTRVGGKAYYTCGECGKRLSSPHTYVFHTRIHSGARPCVCHVCGKQFRAPHALRRHLTETHERARRHTCRLCGKTFANSQNLKQHTRIHTGERPYACGACGKRFAQSGSLHAHAKTHSALLPHGCCECGARFRLRAGLARHALRHTGERAHACPRCARTFKLRHELTAHAQQHDGARPYACSGCPATFRLRRAARQHARTHHAPLPAPPLAPQPGPSYAQLENY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -