Samb026471.2
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- Zfa
- Assembly
- GCA_963921215.1
- Location
- OY992507.1:11641892-11651098[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0057 1.4 11.8 1.0 3 23 657 678 656 678 0.96 2 22 0.25 61 6.6 0.3 1 22 1085 1106 1085 1106 0.95 3 22 8 2e+03 1.9 0.3 1 22 1147 1168 1147 1170 0.82 4 22 0.17 42 7.1 3.0 2 21 1180 1199 1179 1200 0.94 5 22 0.05 12 8.8 0.1 3 23 1251 1272 1249 1272 0.94 6 22 0.00036 0.087 15.6 2.3 1 23 1278 1301 1278 1301 0.96 7 22 0.15 37 7.3 0.0 1 23 1327 1350 1327 1350 0.90 8 22 0.022 5.5 9.9 3.4 1 23 1355 1377 1355 1377 0.97 9 22 0.02 4.8 10.1 0.2 1 23 1383 1406 1383 1406 0.95 10 22 0.0028 0.68 12.8 1.3 1 23 1418 1440 1418 1440 0.97 11 22 0.00021 0.052 16.3 1.8 1 23 1493 1516 1493 1516 0.97 12 22 0.0081 2 11.3 1.8 1 23 1579 1602 1579 1602 0.96 13 22 0.0028 0.69 12.7 2.1 2 23 1628 1650 1627 1650 0.95 14 22 0.1 25 7.8 0.1 2 23 1656 1678 1655 1678 0.93 15 22 0.012 2.9 10.8 0.2 1 21 1723 1743 1723 1744 0.95 16 22 0.0015 0.36 13.6 0.6 1 23 1754 1776 1754 1776 0.93 17 22 0.00013 0.033 16.9 0.3 2 23 1877 1899 1877 1899 0.93 18 22 3.9e-07 9.7e-05 24.9 1.4 3 23 1906 1926 1905 1926 0.98 19 22 0.099 24 7.9 0.2 1 23 1944 1966 1944 1967 0.94 20 22 0.17 42 7.1 0.0 1 23 1991 2013 1991 2013 0.98 21 22 0.015 3.6 10.5 0.9 1 23 2019 2042 2019 2042 0.95 22 22 0.0003 0.074 15.8 0.4 1 23 2050 2073 2050 2073 0.96
Sequence Information
- Coding Sequence
- atGAGTGTGAATTACGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTtcctaccaccagttcggatgaGTCTGAACCTCAAGTCCTTGCATCGAAAATAAAGGATTGTGTCTCAGTTCAGATAAGCGAGAATGACGAACTGCCTACTAATGTCTGCAGGAAATGTGTGGACAATGTCAATAACTGGCATACATTCAAGACAGTATGTGAAAGGACACAAACCAAATTAGAGTTGCTGATAAAAAAAGATGGAAGCCAACTAGAAGAGtTCAATATCAAGAGTGAACCTTTGTCTGATGGAGCATATGATGATGGAGTGGTCATTGATAGCGCATATGCTGACAATGAGAATGGAGCAGGCTATGGAAAGGTGCAGCCAGAAGGTCCTCCAATCTTGGCTTCGTTGGGGCTCACACCAAGGAGTGATAAGAAATTCGTAGATCCTCGAATGGACTGGCAGCGGGTTCATGCTATACTGGACATGATTCAAGATGATGATGTTATTGACTCACTACAGTCCATAGAGGAGTGCGATGATGTCAGGCAGTCGGAACATGACTCTGAGTCAGAGAGTGAACTGCAAGACAATATTGATGACAACTTTATTGACTTCAAAAATggatatatttgtaaaaataaagagGTACTCTCAAAGACCCCTAAACTATCTGCATCCCGTAATAATGAGAAAATAAGGAATGCCTCGACTCTCAGAAAGCGGAAAATTGAAGAACCACAACATTGTTTACATCCTAAACATGCTTGGCAATTGCTATTCACCAATGATTTATTAGAGTTAATAGTAACCTCTACAAATAATAGAATTCTTCAAATGGGGCATAGCATTGCATCATCTACTAGTGTTGGGGAAATCAAAACACTCATTGGTATTTTATACCTCCATGGAGTTATGAGACCTACACATCAAAATAGTATTGACCACTGGAGCAAAGAGTTTGGGGTACCATGCATCAGGAGTGCAATGAAATATGACCGTTTCAAATTTCTACTTCAGAATATGTGCTttgaaagtgataatgaggacaGCATTATAAAGTGTGATATAATGAAAAGAATGAGGAAAGTGTTCGAAATATTTGCTATTAACTGCAGAGCATCATTCGAGATCAGTAACACTGCTGTAGTTGATGAGGTCATTGTTCCCGTTTATGGTCCGTGCCCATTCCGctatcaaattaaaaagaaacctCTTAAATGCGGTTTAAAAATGGTGATGTTGGTTGATCCTACTAATTTCTATGTCAATAACCTGGATGTCATAACAGATTCATATTTTAGTGCAGATGAAATAGTGAAAAAAATGGTCAatcatttgtctggcacaggcAGGACCATTGTAATGGACAGTTGGTACACGTCCACTCACTTGATTGAAACACTTAAAAAGGACTACCAGCTATACGCAATTGCGGCCCTCCATCCATCTGATGATATAATACCACCCGTTTTTCTATCTACGTACAGAAGTAGGCATACATATTTGACTGGTTTCTTAGATGATGATGTCCAACTGACATCGTATGTAAGTGCTGACTCGAAATCTATGAATGTTGTGACCAACGAACCTATGTTTTACAAGAGAGGGTACTCCAATGCGAAACATACAACTGTGGTGGCATCGTACAAGAAGAATCAGTCTGCAGTGGAAGTTGTAGATGTTCTGATGCATTACTACACAACTATGCAACATACTAATGATTGGactctttctttatttttcactttactCAACATTGCAGCAGTGAATGCTCAAgGTATCGAGAGTGACAAAgacgacgaagaagaagagGACAAAGATGAAACACCCGACACAATTCCAAAATACGCGAAGGTGCCGCGCATGCCTGAAGTGTCCATTACGGTGATGAGGTCCTCCGGGGAAACGTTGCACGCGCGCCAAGGTATCCAACAGCTCGCGTCTAAGGACTGTCTCGTCTGCGGCCGCTCTTATAGGTATTCCCACAATGCTAGACGACACGAACTCACCGCCCATAGCTTTGATAGatatacaaacaaaacaacccACAAAAAACAACATTCTCACATGCAACCAAAACTTAGGCCGAATCCTTTCAATCCTAAAGCGCGGTTAATGCCAAATCCGATTAGCCATAAAATGCAACTTATTTCTAAACCTAAGCTTATGATGAATAAAATGGCCCCACACAAAGTTGTCGCACCACCGAAACCAGTACTAGTTAGGCCGGGCAAGCAAGGTCCGAAAAGCAATTTACCGTATCCCTTGCGTATAAGAGCACTAAAAgatttgcaaataaataaaaaagagccACAGATTTTGAAAACTCTTTTGACATCGAAACCTGAAGTTTTGGTGTCCGAACCCGAAATCATGAATTCTGGTCCGGAGAGCCCGGAAACATTGATTTCGGAACCAGAAATTGCGTCTTTTCAAGTTGAAGCAATTCTCTCAGAACCAGATAATTTTGATCCGCAACAAGATACTTATGAACAGCAAGATGAGTATGATCAACAAGCTGATGGTTATGACCAACTGGCTGGCGAAGGAGAAGGGGATGGTGACGATACTAATAATCAAAATCAGAATTATGATACGGTTGACATGGAATCCGACAATGAAATCGAAATCGCTAGGGAACAAGAAAACGAAGTTGACGAAGAAGCTCCAAACATGGAAACAGATGAACATGTCCAGAACGACGAAGAGAATAACGTGGATGGCACTCAGAGTAATACTGAGAAACAACACGCAGAAGAAAATGGAGAAAATGGTGCTGATGACAACGATAAATATAATGCCGAAGAAAATGACGCAGAGTGTGACGAGGACAATGACAACGAAGAAAGAGATAATGAAGAGAATATTGACAATCATGACGAGAATctagacgatgatgatgatgaacttcCACCAATGGAGATAGCCCCAGTTGTAGAAATCAATGAAGACTTGCATACGAATTCATACAACAGTGAACATAATGAAgaagaagaggaagaagaaCTTGAAGAAACTGTTGAACAGAATGACACAGTTGATGGTGAAGAGGGAATTAGGGAAATTGACCCTAATAAACTTTATGTGACAAAGACACAACGCGATTTCATACACAAGTATCGTGATGTTATAGAGCAGATTAACACAAAACGATGCCTTTGCTGCGATAGAGAACATCCTCGTAGGAAAGCGGTCATCCAACACTTGCAGAAAAATGGTCATAAAGTACCTAAACACACATGCTACAATTGTGTTATCACATTTGGACACATTGGTGCTTTATTGAGTCACATGCGATCGAACTCCTGTACTAATTTAtggaaaataatttataatgaaGATGGAATTACCGATGACTTAGTTTTAGAAGATCCTAAGGACAATAAGGTAGCATACAAAGACATCTTTAATGCTAGGTCGTATGCTTGTAAGCTTTGTCCAGCTAAATTCCAATTGAAACAATTCATAATGAAACATGTACTGGACGTTCATGAAGATGGCCAATCTCGAGTGCCACTCCACTGTGTTCACTGCAGGTCACGATTCAAAGACAaaagtctaataaaaaaacatattcgcAATGGCGAATGCACCGTGTACATCGCTTGCGATTTATGTTCCGAGAAATTTCTGAACATGCAAGATTTTAACGACCATGCTTTGGGCGTTCATGCCGGAAGTTTTGATCAATCTGAGAATCAAAATAAATGCGTCGACGGTCGACCGACAGATTGTCCCTTGTGTGGCAAAAAGAACAGTAGCTATCCGAATTTGGTCAAACATTTGAAGGCTATTCATAACGAAGATAAACCACATTACTGTCAACATTGCGACGTCAAATTCGAGCAAGCTGGTGATCTTAACAAACACATTTATACTGAACACTCGGATAGAACTTTAGGCATGAACACCAATGAGCCAGACATTTCACTAATTAAAGAAGAAGCTGAGGAGTACCACTACTCTTGCACAGAATGTAATGCTATATTCGAAACCGTCGACGCATGGACGGATCATCAGGTGGCGGAACATAATCAAATCGCACATCACTGCGATCAATGCGAAAAAAAATTCTTGCGGCCATCCGAGCTTGCCGAGCATAAGAACACCCATTTGCGTGTGAAGTTTTATCCTTGCAGCGTTTGTACTAACTCATACAGTACACCGCAGAAGTTGTCTGAACATGTTCAACAAGCCCACGCCGGGGTAGGACATGTCTCCATGGAGTCTGAATTCTTTTGTGACATTTGCATAAGATCATTCAAAAGTCGCCAAGCCTATTCTAATCACATGCGCATACATGCTAAAGTTCCGACCACCAACAGAAAACCTGGGGATCCGAAAAGCTTTGCGCCGCAAATAATCGGTAAACCTATCAAACAGTTCACGCCGCTTCCCTCGCAACAACCCCCTAACTTTGTCGCTTTAAAGTTAAACTGTAATGTTCCTAATGCCCCTTATTCTTGTGATATATGCGGTAAAGGTTTCAtgcataagaaaaatatttggaaACATAAGAAAGTGCTTCACGCCGACCTTGTCAATGACAGGAACGATAGTGAAGAAAATACAATGCATGCTTCTACAGAGGAAGACGAGTATACTACAGAAGAAAACGGTGCTGTTCTTTCAACACCGCAATTTAATAGTTTCAATTTTTCGAGCTTTGCATCGCAGCATCAAAATGCACAACAGGCGGTACAAGACCCGGCGCCGTTCTCGTGCGAACTATGCTTCAAACGATTCCCACTAAGAACTAGTTTGTGGAAACACAAACGAGCAAAACACGGCGTCATTAACATCAATGCCGGTGGAACCGAACAGCAAATCCAAGTGACACCGAACGAGGCTGGCAACAGGTCAAGTTGTACAATTTGTAGGATCACTTTCTCAGATAAAAAATCGTACTACCGCCATAGAAAGAATGTCCATAAATCAACTACACAGATGTGTAAAATATGCGGTAAGCCACTGAACTCTACATTGGAGTTGTATGAGCATCTAAAGGCTGCACACGCCCGAGAGCTACTAGGGTACAATGCCAATCAAGGGTCTAGCAAAATGCCACAAATGAAACAAGAACAAGAACTAGAGGAATACGATAATGATCAAGATTCGGCTGATCCCAGTGTTGAGTATCAAGCTCGATACCCATGCGATACTTGTGGCAAACAATTCGTGGGGTTACTTGCACTACAAAACCATCAGTGCATTAATCAATCTTCAAACCAACCGCAGACTTTTGATTGTGAAATTTGCCACAAGAGTTACACCTCCATCGCAGCATTAAAAAGCCACCGCGGTTGGCATTTACGATCTCCAGATGGTAAAGCTGCTGCGAATAACACCGGACTTTGGATGCCTCAGCACAAGGTCACTAGTAAAGTTAGTAAACACGAAGTAGTTGATCCCGTACAGTTGGCCCGCGTACAGCACGTGCCGCCCGTCGTCGCCGCCGCCACCACAACCGCCAACACCGCCGCTTCTGTGGCGAAGAGGAGGCTCCCACCCGAAGTGGAAGTCACCGTCGTTAATCCAAACAAAAAGATGCGTTCAGATGATTCCATCGAAATGGAGCATAACAGCATGACGGGCTCCGCCGAGGATAGATACTGCACTATTTGCGATAAAGAATTTACTAAACGCGCCGCTTATCAGCGTCACATGGACGAAGTGCATCAGCCTAACTCGGTCTTTTGTCCTGTATGCGATAAGAGTTTCACTCGCAAATCTACTTTACTCGTCCACATGAAAAAACATTACGAGGGCGGAGAGGGTAGTTCTGGAACTGCAATAGTGGACGATGACGTGTACGCTTGCGAACTATGCGGAGCGCAGTATGACAACGACAAGGCGCTGAAGGCACATAGTATTAGGCACCACGGCGAAGAGGAGTCTGCCGAGGAGGAATCCGATGACGAGGGCAGTGTCCCAATAGCGCAACCGGGCGAGTTCACTTGCGCGCAATGCGGGGACGGCGTCGCCACCCCCCGCGACCTCATCGCCCACCGCTCCATGCACGCGACTCCCACCAAATTTTTCTGTAACATTTGCAAAGTGTACTTTTCGAGAGCTTTAGATCTGTCCTCGCATACGCGTGCGAGGCACTCTGacaacgaaaaagtattttttccaTGTGCCATGTGTGACCGCTTTTACATGAATAAGAAGAGTTTGCAACGACACATTGAGATGGCTCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDESEPQVLASKIKDCVSVQISENDELPTNVCRKCVDNVNNWHTFKTVCERTQTKLELLIKKDGSQLEEFNIKSEPLSDGAYDDGVVIDSAYADNENGAGYGKVQPEGPPILASLGLTPRSDKKFVDPRMDWQRVHAILDMIQDDDVIDSLQSIEECDDVRQSEHDSESESELQDNIDDNFIDFKNGYICKNKEVLSKTPKLSASRNNEKIRNASTLRKRKIEEPQHCLHPKHAWQLLFTNDLLELIVTSTNNRILQMGHSIASSTSVGEIKTLIGILYLHGVMRPTHQNSIDHWSKEFGVPCIRSAMKYDRFKFLLQNMCFESDNEDSIIKCDIMKRMRKVFEIFAINCRASFEISNTAVVDEVIVPVYGPCPFRYQIKKKPLKCGLKMVMLVDPTNFYVNNLDVITDSYFSADEIVKKMVNHLSGTGRTIVMDSWYTSTHLIETLKKDYQLYAIAALHPSDDIIPPVFLSTYRSRHTYLTGFLDDDVQLTSYVSADSKSMNVVTNEPMFYKRGYSNAKHTTVVASYKKNQSAVEVVDVLMHYYTTMQHTNDWTLSLFFTLLNIAAVNAQGIESDKDDEEEEDKDETPDTIPKYAKVPRMPEVSITVMRSSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKTTHKKQHSHMQPKLRPNPFNPKARLMPNPISHKMQLISKPKLMMNKMAPHKVVAPPKPVLVRPGKQGPKSNLPYPLRIRALKDLQINKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPDNFDPQQDTYEQQDEYDQQADGYDQLAGEGEGDGDDTNNQNQNYDTVDMESDNEIEIAREQENEVDEEAPNMETDEHVQNDEENNVDGTQSNTEKQHAEENGENGADDNDKYNAEENDAECDEDNDNEERDNEENIDNHDENLDDDDDELPPMEIAPVVEINEDLHTNSYNSEHNEEEEEEELEETVEQNDTVDGEEGIREIDPNKLYVTKTQRDFIHKYRDVIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNEDGITDDLVLEDPKDNKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPLHCVHCRSRFKDKSLIKKHIRNGECTVYIACDLCSEKFLNMQDFNDHALGVHAGSFDQSENQNKCVDGRPTDCPLCGKKNSSYPNLVKHLKAIHNEDKPHYCQHCDVKFEQAGDLNKHIYTEHSDRTLGMNTNEPDISLIKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCTNSYSTPQKLSEHVQQAHAGVGHVSMESEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKSFAPQIIGKPIKQFTPLPSQQPPNFVALKLNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNDRNDSEENTMHASTEEDEYTTEENGAVLSTPQFNSFNFSSFASQHQNAQQAVQDPAPFSCELCFKRFPLRTSLWKHKRAKHGVININAGGTEQQIQVTPNEAGNRSSCTICRITFSDKKSYYRHRKNVHKSTTQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKMPQMKQEQELEEYDNDQDSADPSVEYQARYPCDTCGKQFVGLLALQNHQCINQSSNQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDPVQLARVQHVPPVVAAATTTANTAASVAKRRLPPEVEVTVVNPNKKMRSDDSIEMEHNSMTGSAEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSGTAIVDDDVYACELCGAQYDNDKALKAHSIRHHGEEESAEEESDDEGSVPIAQPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFSRALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -