Basic Information

Insect: Scoparia ambigualis
Gene Symbol: -
Assembly: GCA_963921215.1
Location: OY992518.1:27905746-27912686[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00065 0.16 14.8 1.1 1 23 153 175 153 175 0.98

2 13 0.0003 0.073 15.8 2.3 1 23 183 205 183 205 0.97

3 13 0.015 3.8 10.4 2.2 1 23 210 232 210 232 0.95

4 13 4.8e-05 0.012 18.3 0.1 2 23 252 273 251 273 0.97

5 13 0.0011 0.28 14.0 2.3 5 23 284 302 280 302 0.91

6 13 0.00043 0.1 15.3 2.4 1 23 308 330 308 330 0.98

7 13 9.5e-05 0.023 17.4 0.1 3 23 338 358 337 358 0.99

8 13 9.1e-07 0.00022 23.7 2.2 1 23 364 386 364 386 0.96

9 13 7.6e-06 0.0019 20.8 0.6 1 23 392 414 392 414 0.97

10 13 0.00011 0.026 17.2 2.6 1 23 420 442 420 442 0.98

11 13 2.9e-05 0.0072 19.0 6.9 1 23 448 470 448 470 0.98

12 13 1.7e-06 0.00042 22.9 0.4 1 23 476 498 476 498 0.98

13 13 2.2e-05 0.0054 19.4 0.6 1 23 504 526 504 526 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00065	0.16	14.8	1.1	1	23	153	175	153	175	0.98
2	13	0.0003	0.073	15.8	2.3	1	23	183	205	183	205	0.97
3	13	0.015	3.8	10.4	2.2	1	23	210	232	210	232	0.95
4	13	4.8e-05	0.012	18.3	0.1	2	23	252	273	251	273	0.97
5	13	0.0011	0.28	14.0	2.3	5	23	284	302	280	302	0.91
6	13	0.00043	0.1	15.3	2.4	1	23	308	330	308	330	0.98
7	13	9.5e-05	0.023	17.4	0.1	3	23	338	358	337	358	0.99
8	13	9.1e-07	0.00022	23.7	2.2	1	23	364	386	364	386	0.96
9	13	7.6e-06	0.0019	20.8	0.6	1	23	392	414	392	414	0.97
10	13	0.00011	0.026	17.2	2.6	1	23	420	442	420	442	0.98
11	13	2.9e-05	0.0072	19.0	6.9	1	23	448	470	448	470	0.98
12	13	1.7e-06	0.00042	22.9	0.4	1	23	476	498	476	498	0.98
13	13	2.2e-05	0.0054	19.4	0.6	1	23	504	526	504	526	0.96

Sequence Information

Coding Sequence: ATGACTACTATTCCAATTTtgcaaaacaaaaatgttgataAATGTTGTCGAACATGTCTTAACGACTCTTCTAATAAAATGTTTGAGATATTCGAAGACTACCACAACTCTGCAACTGTAGCTGAAATATTGTTGATTTGCACTTCAATAGCggtgaGAAGAGAAGATGATTTACCAAAGAAGTTATGCAGCAGTTGTTTTAACTGCTTAATTAGTTTTTATGACTTCAGGAATCAAGCAGAAAAAGTTGAGGCAAAACTGAGAGATGCTCTGACTGAGACCGTGGTACTACCACAAGACGCACCATTGGATAAAAGTATTATGATTGAAATTAAATTGGAGAATGGTACTGTTGATGCTAGAAATACCAATAGTTACGTTGATGATGATTTTCATGATGTCGACAGTGTTAAGGAAGAACAGCCCATTGTAATGCATTTAGAAAGTAAAAATACTTACTCATGTAACACTTGCTATGAAAACTTTGAGACTTCCAATGAGTTGAATATTCATTATGAGAAACACAAATCAGTTAAAAAggtaaaatataaatgtaagaTTTGCAGCAAGAAATTCAGGAAGATATCGAAACTAAGTGATCATGAAGCTAAACACAACCGGCAATTGTACACATGTAATTTATGTTCTGATACTTTTGTACACAAATTTAAACTTGTGAGACATTTAGTTGAGCATGGCCGGGAGAAAAAAAAACCAGCTGAAATTAACCAAAACGATGTGAGCCAAAGTCTAGAATGTGATATTTGTTCAGTTAGTTTTAAGTCTGTCCAGTCTTTATCAGCACATATGAGAGTGCACGTAAAGAAAGGTAGAGTTTTGTCCTGTATTCTATGCgacaaagtatttaaaaagctaAATCATTTGAAGCGACATGAAATGTCTCACGAAGTCAATAAGCCGTTCAAATGTAGTGTATGTGCAAAGTCATTCATTACAGAATGTCTATTAAACGAGCATACCAACAGACATTACGGCATAAAACCTCATGGTTGTCCGTTATGTTCTAGAACTTTTCCAAACATATCAGCATTGACGACCCATCTGAAAGTCCATACTAAAGAGAAGAGTTATTTGTGCTCCACTTGTGGCAAAAAGTTTGATTCTAGCACCAACTTGAATCAGCATATGAAGAGACATGAGGGGCTTAAGCCTTTTGCTTGTAATCTGTGTCCAAGATCTTTTGTTAGTAAAgGAGAGCTGAAGTCCCATTACACCACACACTCTGGAGTAAAGTCTTACACCTGCGACCAGTGCGGGGCGTCCTTCACTAAACACAGCTCCTTGGGCAAACACAAGCTGCGTCATTCGGGCATCAAACCTCACCAGTGCGAAACTTGCTCCATGAAGTTCACAAGTAAGGATCACCTAAAGCGTCACTACAGGATCCACACCGGCGAGAAGCCTTACCGCTGTGAGATATGCGAGCGAGCCTTTACTCAGAGCAACGATCTGGTTAAGCATAGGCGGGCGCATTTCGGAGACAAACAGTACAGGTGCACCCAATGCCCGGAAACTTTCCGCCTCCAGTCGGAATTGCGACAGCACGTTTCCGAGCACTACATAATGACGTCACGCCTCCAAGATGCATCGAGCGTTACAAGTAGCCTCAAAGGGTGTCAACACGAACATAGCGAGACGGCAAACCGTGAGAATGTTCCTGAAAGCAATGACAAACCAGCAATTAATGTGGTCCAAGAAAAAGGTATTGCGACAGTTGTTGGTAAAactttggtctcttga
Protein Sequence: MTTIPILQNKNVDKCCRTCLNDSSNKMFEIFEDYHNSATVAEILLICTSIAVRREDDLPKKLCSSCFNCLISFYDFRNQAEKVEAKLRDALTETVVLPQDAPLDKSIMIEIKLENGTVDARNTNSYVDDDFHDVDSVKEEQPIVMHLESKNTYSCNTCYENFETSNELNIHYEKHKSVKKVKYKCKICSKKFRKISKLSDHEAKHNRQLYTCNLCSDTFVHKFKLVRHLVEHGREKKKPAEINQNDVSQSLECDICSVSFKSVQSLSAHMRVHVKKGRVLSCILCDKVFKKLNHLKRHEMSHEVNKPFKCSVCAKSFITECLLNEHTNRHYGIKPHGCPLCSRTFPNISALTTHLKVHTKEKSYLCSTCGKKFDSSTNLNQHMKRHEGLKPFACNLCPRSFVSKGELKSHYTTHSGVKSYTCDQCGASFTKHSSLGKHKLRHSGIKPHQCETCSMKFTSKDHLKRHYRIHTGEKPYRCEICERAFTQSNDLVKHRRAHFGDKQYRCTQCPETFRLQSELRQHVSEHYIMTSRLQDASSVTSSLKGCQHEHSETANRENVPESNDKPAINVVQEKGIATVVGKTLVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00682662; iTF_00683549;
90% Identity: -
80% Identity: -