Basic Information

Insect: Scoparia ambigualis
Gene Symbol: -
Assembly: GCA_963921215.1
Location: OY992523.1:12012165-12017972[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.056 14 8.7 2.5 1 21 80 100 80 101 0.95

2 31 1.1 2.6e+02 4.6 0.1 2 23 129 150 129 150 0.93

3 31 0.011 2.6 10.9 1.5 2 23 173 194 172 194 0.97

4 31 0.011 2.7 10.9 0.2 1 23 198 220 198 220 0.95

5 31 0.043 11 9.0 0.2 1 20 225 244 225 248 0.79

6 31 0.4 99 6.0 0.9 3 23 256 277 254 277 0.94

7 31 0.0029 0.71 12.7 1.6 1 23 284 307 284 307 0.96

8 31 2.5e-06 0.0006 22.4 1.6 1 23 314 336 314 336 0.97

9 31 1.6e-06 0.0004 22.9 1.4 1 23 342 364 342 364 0.98

10 31 0.00024 0.058 16.1 0.2 1 21 367 387 367 388 0.96

11 31 0.026 6.5 9.7 1.7 1 23 466 489 466 489 0.91

12 31 0.085 21 8.1 0.8 1 23 559 581 559 581 0.98

13 31 3.2e-05 0.0077 18.9 0.7 1 23 585 607 585 607 0.98

14 31 1.7 4.3e+02 4.0 0.0 1 23 612 635 612 635 0.93

15 31 0.073 18 8.3 0.4 1 21 641 661 641 664 0.85

16 31 1.4 3.4e+02 4.3 1.1 1 14 671 684 671 686 0.92

17 31 1.3 3.3e+02 4.3 2.6 1 23 739 761 739 761 0.92

18 31 0.71 1.7e+02 5.2 0.3 3 23 787 808 785 808 0.92

19 31 0.00021 0.051 16.3 0.8 1 23 830 852 830 852 0.98

20 31 0.0025 0.62 12.9 6.3 1 20 856 875 856 878 0.95

21 31 0.0025 0.61 12.9 0.8 1 23 883 906 883 906 0.97

22 31 0.04 9.9 9.1 4.4 1 23 912 935 912 935 0.96

23 31 0.18 44 7.1 0.1 1 23 990 1012 990 1012 0.93

24 31 0.00072 0.18 14.6 3.5 1 23 1080 1102 1080 1102 0.97

25 31 0.0033 0.8 12.5 0.2 3 23 1108 1128 1107 1128 0.95

26 31 0.0051 1.3 11.9 0.2 1 23 1136 1159 1136 1159 0.94

27 31 0.0047 1.2 12.0 0.9 1 23 1165 1188 1165 1188 0.96

28 31 0.23 56 6.7 2.3 1 23 1194 1217 1194 1217 0.96

29 31 0.00051 0.12 15.1 0.3 1 23 1223 1245 1223 1245 0.96

30 31 1e-05 0.0025 20.4 3.1 1 23 1251 1273 1251 1273 0.99

31 31 0.00068 0.17 14.7 6.2 1 23 1279 1301 1279 1302 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.056	14	8.7	2.5	1	21	80	100	80	101	0.95
2	31	1.1	2.6e+02	4.6	0.1	2	23	129	150	129	150	0.93
3	31	0.011	2.6	10.9	1.5	2	23	173	194	172	194	0.97
4	31	0.011	2.7	10.9	0.2	1	23	198	220	198	220	0.95
5	31	0.043	11	9.0	0.2	1	20	225	244	225	248	0.79
6	31	0.4	99	6.0	0.9	3	23	256	277	254	277	0.94
7	31	0.0029	0.71	12.7	1.6	1	23	284	307	284	307	0.96
8	31	2.5e-06	0.0006	22.4	1.6	1	23	314	336	314	336	0.97
9	31	1.6e-06	0.0004	22.9	1.4	1	23	342	364	342	364	0.98
10	31	0.00024	0.058	16.1	0.2	1	21	367	387	367	388	0.96
11	31	0.026	6.5	9.7	1.7	1	23	466	489	466	489	0.91
12	31	0.085	21	8.1	0.8	1	23	559	581	559	581	0.98
13	31	3.2e-05	0.0077	18.9	0.7	1	23	585	607	585	607	0.98
14	31	1.7	4.3e+02	4.0	0.0	1	23	612	635	612	635	0.93
15	31	0.073	18	8.3	0.4	1	21	641	661	641	664	0.85
16	31	1.4	3.4e+02	4.3	1.1	1	14	671	684	671	686	0.92
17	31	1.3	3.3e+02	4.3	2.6	1	23	739	761	739	761	0.92
18	31	0.71	1.7e+02	5.2	0.3	3	23	787	808	785	808	0.92
19	31	0.00021	0.051	16.3	0.8	1	23	830	852	830	852	0.98
20	31	0.0025	0.62	12.9	6.3	1	20	856	875	856	878	0.95
21	31	0.0025	0.61	12.9	0.8	1	23	883	906	883	906	0.97
22	31	0.04	9.9	9.1	4.4	1	23	912	935	912	935	0.96
23	31	0.18	44	7.1	0.1	1	23	990	1012	990	1012	0.93
24	31	0.00072	0.18	14.6	3.5	1	23	1080	1102	1080	1102	0.97
25	31	0.0033	0.8	12.5	0.2	3	23	1108	1128	1107	1128	0.95
26	31	0.0051	1.3	11.9	0.2	1	23	1136	1159	1136	1159	0.94
27	31	0.0047	1.2	12.0	0.9	1	23	1165	1188	1165	1188	0.96
28	31	0.23	56	6.7	2.3	1	23	1194	1217	1194	1217	0.96
29	31	0.00051	0.12	15.1	0.3	1	23	1223	1245	1223	1245	0.96
30	31	1e-05	0.0025	20.4	3.1	1	23	1251	1273	1251	1273	0.99
31	31	0.00068	0.17	14.7	6.2	1	23	1279	1301	1279	1302	0.95

Sequence Information

Coding Sequence: ATGTGGGGTCAGGGTTTGCGAAATTTAATAAGAGgACGCCCCGGACAAAATAGCAATGAGACAGTGATAAAAGTAGAGGAAGCCGTAGACATTAAGAGTGAGAGTGGTAACATAATACCAGAAAAGAGGCGTTACCAGAGAAGTGCACGAGCGGAAGCTCGTATAATAACTAAGAAGAACGTCAGTGCCATATTAGAATGTTGGGCCGTTTGCCCATTCAGATGGAAAAGGAATAGGTTCAAATGCTCTTACTGTGAAGCGAATTTTACAGAGTGCCATTTGCTTAGAGAACACGTCAAATTGTGCGCCTCTGGTCACAGCCTGAAAGACATCTACAGCAAATACAAAGAGATGCCTGTCATTAATGTTGACATAACTGGAGCACAATGCAGCATATGCGCCGCCTCCTTCGTAGATGTTAAATATATGCGTGATCATGTCGTCCAACACGGATACAGTTTCAACTACAATCATCCGGATGGCGTGTTGCCTTTCTCTCTTGACAAAGAGTCTTGGAAGTGCGTAATATGCCATGAGAAATTCAACAATTTCCTTAAGCTCTACGAACACATGAATGTCCACTACCAGCATTACATTTGTGCTACTTGTGGCAAGGGGTACATGACAGCGACCAGATTAAGGAAGCATTCAGAAGTGCATATATCAGGATCGTTCCCTTGTAAAGACTGTGGACGAATATTCACTATGCGCGCTGCAAGAGATTCTCATAAGGCAAACGCTCACGCAAAATCGCCTCGTTACGGATGCCCTCATTGCAATCTCCGTTTTGAAGGATATTACGATAGAATGACACATCTGAACGAGACACATCGGGAGAAGGAGGTCTCCTATGACTGCTCGCATTGCGATCTCACTTTTAAAACTAGCGGTAAGCGTGCAATGCACGTTCGCTCAGTACATTTTCCACCTCAAAGGGATTTCAACTGTCCGTTCTGCGAATGGAAATTTAAAACGAGTTATGAACTAAAGCGACATATGATCCGACACACTGGGGAGAGAAATTTTCATTGCAACGTCTGTGGGAAATCTTTTCCTAGAAACAGAGCGCTCGCTTCACATCTCAAAACGCACGAAGAGTTCAGTTGTAAATGGTGTGCTACTGTGTTCAAGCAACGATCTCAGTTGATATCTCATCTGCGGGCGAgttTCGCTACTGCGGTCACGGAGGCTAATTTAGGCACCATTAGTCCCGCTAGAAAACCTAGGAAGTTAAAAGAAAACGTTAGCGAACGTCAGATGCGCAGGCGCCGGCGAGCAAACAACGAGTTACCAGTGAGATCAGAAAATCGCATCGCAGTAACAATGATGCGCAAAAACGCCATGACAATTCTCGAATGTTCCACCGCTTGGGCCTTTCGATGGTTCCGGGGGGCCTTCTTTTGTTCTTATTGCCAAACGAAGTATACAGATATAGACTCACTCCGCGAACACGTTTTTAACTATCACCTAAATGAACCACCTACTGAAAGAGTATTTGCTAAGCTGACTGAAAATAATATGCTTAAAATAGATGTTGCCAATCTTACTTGTAGAAACTGCCAAAATTTAGTAACTATAGATGAGTTAAAACAACATATCCCAACGTGTCACGGAAAAGAACTGCATACTGAATACAGCGATGGGGTTCTGCCTTTCAAACTCTCAGCTAACGAGTTCAGTTGCCAAAAATGTTTGGCTGTATTTGAAACTTTTTCAAAGGCGGATCAGCATATGAACACTCACTATCAAAATTATGTTTGTGACGAGTGTGGGAAGACTTTTGTGTCCATCAGCCGTTTCAGAAAACACGTTCAAAACCATGAGTTTGGACAGTTTCCGTGCGGTGAATGCGGTGCCATACTGAACACGAGAGCTCAACGATGGGGCCACAGGTTGAGAGTGCATAAAAACGGCGTACGGTATTCTTGCCCAAAATGCTCACAGGCATTTACAAGCTACGACGTCAGAGCCAAGCATTTAGTTGAGCAACACGGGCAGCGCAAACTAGAATACGAGTGCTCTGCATGTAGCAAAACATTTGACACTAGTTCGAAACGGGCAGgcCTACAAGATGTCCATCCGGGGACCGACAAACCTGCATCATCGAATAAATTTAAATGGAAACGGAGACGAAAGCTCACAGAAGATAAAGCTAATGCTGCTACGATACTACAGTACTCTAACGCAGTAGCTTTTAGATGCCAACGCGGAAAGTTTATGTGTGCATATTGTCAGACTAACTGCCAAAATATTCGTGAACTACGTCGACATTCATCCGACCACGAAAAGCTGGAGGTCATAGAGAATCCTAACATAAGAATCTCTTTTCCTCTTAGAATTGAAATCACCGACTTGGCATGTACAATTTGTAACGAAAACATGGAAAATTTAGAGCTATTAAAACATCATCTTGGTAAAATTCACTCCAAGATGATTGATACAGACTATAGCGACGGTGTCATCCCATTCGTACTTACTGCGAAAGACTACAGATGTGTTCATTGTGGCTTGGCGTTTGAGCGTTCCTTAACTCTGTTTATACACATGAATGAGCATTACCAGAGTTTCGTTTGCCACACATGCGGGAAAGGTTACTCTTCAAAACACAAACTTCGCGCGCACCAAACATGCCATGAGTCTGGACAGTTTACATGCCCGAAATGTGAATTGATTTTCAACAATCGCGCTTCTAGAAACAGACATGTGACGACAAGCCATGGACCAAAAGAGAGATATCGGTGTCCCGTTTGTGATTATCATTTTGATTCTTACCACTCGAGGCTGAAGCATTTAGATAAAATGCACGGACAAAAAGTAGAGTACAAATGCACCTTATGCCCGTCTGTATTTGgATCCGACCTCAAAATTAAATGGAAACCGAGGCGCAAGTATAACGATCACAGAGACAATGCTGCAATTATAATTGAGTGCTCCAGCGCTTGTCCGTTTAGATGGAAGCGTGGGTCGTTCACCTGCGCCTTTTGCCCCCTCTCGTTCGGAGACCTATCAGCCGTGAAGGATCACTCAATAGAACACCCAAATAGAATCGAAGCTATGCGTTTCGCACGACCATTTGATAACATAAAAGTTGACGTCACTGGACTTAGATGCGAACTGTGCTTAGAAAATATGGTAGACGTCGACGCACTGAAAAATCATTTACTTGGCGTTCATAACAAATCGATCAATACCAATACAGATTTAGGTGTAACACCCTTCCTGACTGAGGGCAAAGATTTCATATGTACCCATTGCGATAAGAGATTCGAATTGTTCTCCAAATTGAATACCCACATTAACCAACACTACCCTAATAACATTTGCTTCGAGTGTGGCAAAGCTTTTTCAGCGGCGCATAGACTGAAAGCTCATTTGGGGATACATGAAACGGCAAGCTCTACACAGTATAAGTGCACTAAATGCGAACAAGTTTTCCCCACTCGTGTACTAAGGAACAGCCATATTGCTTTGGCTCATGGCCCAGAGTATAGGTATAGGTGTCCTTACTGCAAGGACTCTTTTAAACGTTATGCTGATAGAGCTAAGCATCTAAAAGAGGCACATAATAGGAAAGTCGAGTACCCGTGTCATTTGTGCCCGTCGGTTTTTGCTATGTGCAACCAGAGAACCAAGCATATACAACAAGTCCACATACGACTGAAACAGTTTTTCTGTGTGCTATGCCCTTACCAATTCGTAACTGCTGCCCAATTGAGGAACCATATGGTAAAACATGTGGGTGAACGAAGTTTTCAATGCGAAGTTTGCAAGAAATGTTATCCACGACTCAAAACTCTCAAAGAACATATGCGTATTCATAATAACGATAAAAGATTTGTTTGCGAATATTGTAACCATGCATTTGTACAGAAATGTAGTTTAAAAAGCCACTTGAGAGCACACCATCCTAATGCTGAAtctttaaagaaagaaattctACCCAATGTATATTAG
Protein Sequence: MWGQGLRNLIRGRPGQNSNETVIKVEEAVDIKSESGNIIPEKRRYQRSARAEARIITKKNVSAILECWAVCPFRWKRNRFKCSYCEANFTECHLLREHVKLCASGHSLKDIYSKYKEMPVINVDITGAQCSICAASFVDVKYMRDHVVQHGYSFNYNHPDGVLPFSLDKESWKCVICHEKFNNFLKLYEHMNVHYQHYICATCGKGYMTATRLRKHSEVHISGSFPCKDCGRIFTMRAARDSHKANAHAKSPRYGCPHCNLRFEGYYDRMTHLNETHREKEVSYDCSHCDLTFKTSGKRAMHVRSVHFPPQRDFNCPFCEWKFKTSYELKRHMIRHTGERNFHCNVCGKSFPRNRALASHLKTHEEFSCKWCATVFKQRSQLISHLRASFATAVTEANLGTISPARKPRKLKENVSERQMRRRRRANNELPVRSENRIAVTMMRKNAMTILECSTAWAFRWFRGAFFCSYCQTKYTDIDSLREHVFNYHLNEPPTERVFAKLTENNMLKIDVANLTCRNCQNLVTIDELKQHIPTCHGKELHTEYSDGVLPFKLSANEFSCQKCLAVFETFSKADQHMNTHYQNYVCDECGKTFVSISRFRKHVQNHEFGQFPCGECGAILNTRAQRWGHRLRVHKNGVRYSCPKCSQAFTSYDVRAKHLVEQHGQRKLEYECSACSKTFDTSSKRAGLQDVHPGTDKPASSNKFKWKRRRKLTEDKANAATILQYSNAVAFRCQRGKFMCAYCQTNCQNIRELRRHSSDHEKLEVIENPNIRISFPLRIEITDLACTICNENMENLELLKHHLGKIHSKMIDTDYSDGVIPFVLTAKDYRCVHCGLAFERSLTLFIHMNEHYQSFVCHTCGKGYSSKHKLRAHQTCHESGQFTCPKCELIFNNRASRNRHVTTSHGPKERYRCPVCDYHFDSYHSRLKHLDKMHGQKVEYKCTLCPSVFGSDLKIKWKPRRKYNDHRDNAAIIIECSSACPFRWKRGSFTCAFCPLSFGDLSAVKDHSIEHPNRIEAMRFARPFDNIKVDVTGLRCELCLENMVDVDALKNHLLGVHNKSINTNTDLGVTPFLTEGKDFICTHCDKRFELFSKLNTHINQHYPNNICFECGKAFSAAHRLKAHLGIHETASSTQYKCTKCEQVFPTRVLRNSHIALAHGPEYRYRCPYCKDSFKRYADRAKHLKEAHNRKVEYPCHLCPSVFAMCNQRTKHIQQVHIRLKQFFCVLCPYQFVTAAQLRNHMVKHVGERSFQCEVCKKCYPRLKTLKEHMRIHNNDKRFVCEYCNHAFVQKCSLKSHLRAHHPNAESLKKEILPNVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -