Samb016993.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scoparia ambigualis
Gene Symbol
clz9
Assembly
GCA_963921215.1
Location
OY992504.1:19816775-19819351[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-08 9.7e-06 27.5 0.0 1 40 14 53 14 55 0.94

Sequence Information

Coding Sequence
ATGCCCCGTACTTACACTAAgaagaaagtaaaaaaatacacacCACAAGACTTAAGCCAGGCCATAGAAAAGGTAAAGGATGGAGAAATGACTGCGTATAGTGCAGCCCAAAGGTACAATATTCCTATGACTACCCTTCATGAACATCTCAAGGTCAATATCATCAGACCAAATGCAGGTAGACCACTTGTTATACCTTTAGAAATCGAAAAAAAGTTAGCAGAGACAATCATCATCATGGAAAAATGGGGTTTTGGGTTGTCGAGACTGGAAATTATGGAAATTGTCAGTGAATATTTACGACTAAATAATATACAAAcaccatttaaaaataatattccaGGTCCAGACTGGTTTATTAATTTTCGGAAACGACATGGACTGTCTATTAAAAAAGCACAGCCAGTAGAATATGTGCGACGAAAAATGACAGACCCATTCGTCATTGGAGAATATTTTGGATTGCTCAAAAAAACTTTGAgtgatttaaatattattggaaGACCTCAATTTATATGGAATCTAGATGAGACTTCATTATGCCTTGATCCATCTAAAACAAAAGTGGttggacaaaaaaataaaccttCTGCAAGGACCACTCACGGAAGTGGAAAAGAAAACATCACTGTGCTGGCAGGTGCAAGCGCCAGTGGTAAGAAATTGCCGcctttgataatttttaaaggcGCATTTGTTTGGGATCAATGGATGGCTGATCTGGAAGATGGTTATTACGATTTTGAATTATCCTATGCCGCCAGTAAAAAAGGATGGATGGAGACGGACATCTTCTATAATTATTTCGATAAAATTTTGATCCCAAGTATTGGTGAAGAGCGACCGGTCCTTATAATTTATGATGGGCATTCGACTCACGTCGATGCAAGAGTTGTGGAGCTGGCAATTCGAAACCATATCACCATTCTCAAGTTACCACCACATACATCACATTTGCTACAGCCGCTGGACATTTCAGTTTTCAAGTCCTTTAAAATGAAATGGGATGCCAAACTCGTAGATTGGCAGCGTAGAAATGTTGGCacaaaaatgccaaaaaaagtATTCGCCCAGGCTATGGCAGAAACATGGCAACAACTTAACCCTGATGTTATCAAAAGTGGTTTTAAAAAAGCGGGAATTTATCCCTTTAACGAACATGTCATACCAGCAGAAAAGTATGACCCAGATACATaccaaagatacctaaaacatatgTCAAAACCTAATTGTACTCATACTCATGATGATCTCAAAAACCCAAAATCCTTAATAGGAATTTGCATTGACTTGATTAACGACCAATTTACTTCAACCAATGAGACTTTTGAAATGTCAAACACTGATAATGTTAGCTTGCTGTCCCAACAATCAAAGTCAAACATCCAAATGATGTCTTTTGTTGCTAACCACCCAAGTCAGATACCTTCATGTCTCCAGAATTCGAAGCCATCACAAGTTCAAGCACAACCAAAAATAAGAATACTTTCAAACGTAATCCTCAAAGAAGCATCACAGTCATTACTTCCTGCCCAAGTACACATTCAACCACTACTTCATGCCCAAACACACCCCAAACGATTGATTCAAGCCCAAGTACACCCCCAACAATTACATCAAGCCCAAGCACACCCCAAACAATTGTGTTCATTTGAAGAATTGTTACTTAGAAAAATACAACAGGATAAAAAAGATAATACTGCTACGAAAAAGAAACGAATTACGAAAGGCGCTGAAGTGATAACTACAGCTATGGGAAAGAAAATTTTATCAGAGATGGGCAAATCCCATGAAGTTAAGAAAGTCACAACAAGCATCAGAAAAAATATGAAGAACAAAGGAGTTAACAAAAAGAAAGAATCTACAGTTACAACACAATatacagaaataaaacaaagccAGCCAAGCTGTTCAGGAATCAAAAGGAAAAGGAAACGTCTATCATCAGTTGACAGCATAACCAGTGTATCCGATATCATGAGCGAACATACAGATTCCGACATTTTTGATTGTGATGATATTCAAGATTCTGAAGGTACTCAAATTTTAGCTGGTGAAGAGATACCcagtgaaaaaaaaactacttttctATCTGTTAAAGGTAAAGGTATTGGAAAAAGAAGTAAAGGTAAAGAAAACCAAGAAGTCAATTCCATAAAAAGACGAAATTTGGAAAATAAAGAAGATACAAAGGAAATCGACTTTAGTGAAGAACAGCTAACAGAACTCGAAACTAAAGATGCAGCTAGTAGAAACCAAGAAAATGACCTTTCTATTcatgaaaattataaattaaatgatTCAGTGCTCGTCAGATATTTAATTAGAAATaaatggaaatattttattggattcataaaagaaataacaaaatatgaaaataaaaactactacctaataaactttttaaaaactacGAGAGTGCAGAAACGTTTAACGTTTATTACTATCAAGAAAAAAGATATTGACAAAGTCCCCGAGGATTTAGTAATAAAGAAGATAGACATAAAAAAAGACAGCGATAAagctaaaaattattatttaaccaaTGAGGAGGATActgtttattttacttaa
Protein Sequence
MPRTYTKKKVKKYTPQDLSQAIEKVKDGEMTAYSAAQRYNIPMTTLHEHLKVNIIRPNAGRPLVIPLEIEKKLAETIIIMEKWGFGLSRLEIMEIVSEYLRLNNIQTPFKNNIPGPDWFINFRKRHGLSIKKAQPVEYVRRKMTDPFVIGEYFGLLKKTLSDLNIIGRPQFIWNLDETSLCLDPSKTKVVGQKNKPSARTTHGSGKENITVLAGASASGKKLPPLIIFKGAFVWDQWMADLEDGYYDFELSYAASKKGWMETDIFYNYFDKILIPSIGEERPVLIIYDGHSTHVDARVVELAIRNHITILKLPPHTSHLLQPLDISVFKSFKMKWDAKLVDWQRRNVGTKMPKKVFAQAMAETWQQLNPDVIKSGFKKAGIYPFNEHVIPAEKYDPDTYQRYLKHMSKPNCTHTHDDLKNPKSLIGICIDLINDQFTSTNETFEMSNTDNVSLLSQQSKSNIQMMSFVANHPSQIPSCLQNSKPSQVQAQPKIRILSNVILKEASQSLLPAQVHIQPLLHAQTHPKRLIQAQVHPQQLHQAQAHPKQLCSFEELLLRKIQQDKKDNTATKKKRITKGAEVITTAMGKKILSEMGKSHEVKKVTTSIRKNMKNKGVNKKKESTVTTQYTEIKQSQPSCSGIKRKRKRLSSVDSITSVSDIMSEHTDSDIFDCDDIQDSEGTQILAGEEIPSEKKTTFLSVKGKGIGKRSKGKENQEVNSIKRRNLENKEDTKEIDFSEEQLTELETKDAASRNQENDLSIHENYKLNDSVLVRYLIRNKWKYFIGFIKEITKYENKNYYLINFLKTTRVQKRLTFITIKKKDIDKVPEDLVIKKIDIKKDSDKAKNYYLTNEEDTVYFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01334755; iTF_01334756; iTF_01334757; iTF_01334758; iTF_00682348; iTF_00284461; iTF_00284470; iTF_00284471; iTF_00284472;
90% Identity
iTF_01334755;
80% Identity
-