Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.1 76 5.4 0.0 27 39 12 24 12 27 0.88

2 3 1e-15 7.8e-13 50.2 0.1 2 45 42 86 41 86 0.96

3 3 1.8e-18 1.4e-15 59.0 0.1 1 43 93 136 93 137 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.1	76	5.4	0.0	27	39	12	24	12	27	0.88
2	3	1e-15	7.8e-13	50.2	0.1	2	45	42	86	41	86	0.96
3	3	1.8e-18	1.4e-15	59.0	0.1	1	43	93	136	93	137	0.96

Coding Sequence: ATGACCCGTAAGTATATTGTGTGGTTCGGTGCAGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGCCGCGCCGACCTGCAGCGCGCGCTCGCCGCCATCCGCGGCGGCGCCTGCAGCGTGCAGCGCGCCGCCGCGCAGTACGGGATACCCACGGGCACATTGTACGGGCGGTGTAAGCGAGAAGGCATTGAGCTGTCTCGCTCCAATCCTACGCCGTGGTCTGAAGACGCGATGGGAGAAGCTCTAGAAGCCGTCAGGGTGGGCCAGATGTCCATCAACCAGGCCGCCATCCACTACAACCTGCCGTACTCGTCGCTCTACGGCCGGTTCAAGAGGTGCAAATACCAGGCGCAGGGCGTCCCACCGATGCAGCCGGACATGCAAAAGGGCATTGAAGGAGACCAGGGCCTGCCCCAAGAGGTTCAATACTACCCGCAGCCCCCTCCCGCCCCCCACGAGCACAGCCTGCAGCACTACATGGGCCATGGCCACAGCCCACTCGTGGAGTACTCGAGTTGCGAGCCCGAGCAGGAGCTGGGCGCCGAGCATTACGCCATGTACTACGGCTGCGCGGCGGGCAGCTGA
Protein Sequence: MTRKYIVWFGAGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALAAIRGGACSVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQAQGVPPMQPDMQKGIEGDQGLPQEVQYYPQPPPAPHEHSLQHYMGHGHSPLVEYSSCEPEQELGAEHYAMYYGCAAGS

Sequence clustering based on sequence similarity using MMseqs2