Sinc002088.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- nfxl1_1
- Assembly
- GCA_036419045.1
- Location
- CM071626.1:29504827-29507301[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1 5.1e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 18 0.0072 3.7e+02 2.7 0.7 4 10 169 175 168 175 0.97 3 18 1.6e-07 0.0079 17.6 15.9 3 19 186 202 185 202 0.95 4 18 5.2e-07 0.026 16.0 11.3 1 19 237 255 237 255 0.92 5 18 0.65 3.3e+04 -3.5 1.0 6 10 280 284 279 284 0.88 6 18 8.5e-05 4.3 8.9 11.2 1 19 290 308 290 308 0.98 7 18 3e-06 0.15 13.6 18.8 3 19 345 361 337 361 0.86 8 18 1 5.1e+04 -5.3 2.2 5 10 384 389 384 389 0.88 9 18 2.7e-06 0.14 13.7 18.3 1 18 395 412 395 413 0.97 10 18 3.5e-10 1.8e-05 26.1 11.4 1 19 422 440 422 440 0.98 11 18 0.43 2.2e+04 -2.9 0.8 5 10 468 473 468 473 0.93 12 18 3.6e-05 1.8 10.1 5.5 9 19 488 498 486 498 0.91 13 18 0.02 1e+03 1.3 6.7 3 12 509 518 508 518 0.90 14 18 0.19 9.4e+03 -1.8 3.3 14 18 547 551 547 552 0.85 15 18 1 5.1e+04 -5.8 4.4 3 10 575 582 575 582 0.86 16 18 2.7e-06 0.14 13.7 4.8 1 11 588 598 588 599 0.97 17 18 3.9e-06 0.2 13.2 13.7 4 18 630 645 628 646 0.89 18 18 7.4e-07 0.038 15.5 8.8 1 16 687 701 687 707 0.92
Sequence Information
- Coding Sequence
- ATGACAACACGATATAGAGATGCGGTTGCAAAGCTACAACAAAATGTTCAAAAACATTTGAAAGAATTGAAAGAATTTTCTTCGTCCGACGATGATGAGCCCTACGATTCTAACGTCCTCGACTCTGTTTTTCGGTCATATAAACGTGATGGCGGCGACATTTACATGCTCGACCGAACTCAGCATCTTCTTGAAGAGGCTATTAGCGGTAGAGCTATTACTTGCCTTATTTGTATTGGTTCCATTAAACGTGTGGATCCAATTTGGACTTGCGATTACTGCTATTGTAATTTACATCTATCTTGCATACAGAAATGGGCTAATGATAGTATATCTTTGAAAAATGAAGAAATTCATAGTTCATTACCAATATTAATCTCAAGAAAAATCGAATGGTGCTGCCCAAAATGCcgaaaatcttataataaacatgatattccacAACAATATAGATGTTATTGTGGGAAATCTGTTGACCCGCAATACCACCCATGGCTTATACCACATACATGTGGTGAAGTGTGCGAAAAATACCTTTCGAATAGAGATAATTGTAAACATAAATGCCTACTGCTTTGCCACCCTGGCCCATGTCCACCTTGCCCGCAGACTGTAAATAGTACTTGCTTCTGTGGGCAAGAACAAAAAAGAGTAAGATGCAGTGCAGCAACATGGTCATGTGGACAGCAATGTAAAAGAACCTTATTATGTAATTCCCATAAGTGTGAAAGCATTTGTCATCCAGGAGAATGTTCACTATGTAAATATGTGAGCATACAGCCTTGCAAATGTGGTTCTGAAGAAGCTGAACGGCCTTGCAATAACCCCTCTTGGCAATGTGATAAAGTGTGTAACAAACTATTTTCATGTGGTTACCACATGTGTGAAAGGCAATGTCATTCTGCAGGTTGTGGAATATGCCCTAACTCTGGATTGCAATCATGTCCTTGTGGTGCAGAGAAGAAATTTGTACAATGTCCTGATGTCATAAAGACTTGCTTAGGCACATGTGGAAAGAGGCATAAAAATTGTGAACACAACTGTCCAGAAAAATGTCATAAAGGAGCTTGCCCACCTTGCCAAGTTCTGACAGAGAAGAAGTGTTTATGTTCTACACACTCAAGAATGCTGCCGTGTAGTAAAGAATTTAAATGTGAAACAAAATGCAGAGGCATTCGCCTCTGTGGTAAACATGCCTGTGGACGTAAATGTTGTAATGGAAATTGCCCACCATGTGAGAAAGTTTGTGATAAACCGTTACAATGTGGCCGTCATAAATGTACAATGATATGTCATCGTGGTCCATGTTATCCTTGTTCAAGAGAATCGAAAGTGACATGTAGATGTAAGGAAAGTTTTATATCTGTTTTATGTGGCAGAGAAAGATTTATCAAACCacctaaatgtattaaattgtgcAAACTTAAATACAAATGTGGGCATGTTAACGAAAATAGCCATGTTTGTCATTTTGGTGCTTGTCCACCTTGCAAAACTATATGTAACAAACCATTTTTGAATTGTGAACATAGGTGCAGGCTTGTTTGTCATGAAAATGTAGCTGTTGTTTTCAAACAAGTAGAAAAACCAGCAACTCCATGGGAAATCACCCCACCAATAACTAAAATTATGTCATTGGAATGTCCACCATGTGAAGTTCCTGTTCCTATTGTCTGTTTTGGAGAGCATGAGACAGTAAATCAAGCATGTTCTGTTGCTAGAAGACATTGCTGTGGACGCACTTGCTCACAACCACTTTTATGTGGAAATCATAAGTGCTCATTGTTGTGTCATTTGTACACAGAAGATTCTTTGTATCCAAATGTACCTTATAATTGTAATCAGTGTGAATTAGATTGTAACAAGATTCGTCCAGACAAATGTTATCATAAATGTGCTCTGCAAGTTTGTCATCCTGGACCATGTCCGCCATGTGAAATATTAGAATATATTTCATGTCATTGCGGCCTCACAAAACTATATCTACGATGTCGAGAGATCTCTACTGCTACTGATGAAATGCTATCATGTAAGCTTCAGTGTCCAAGAAATTTAAGTTGTGGTCATCGATGCAAGAGCATTTGCCATGCCGGTATGTGTGGAGTTAATCAAATTTgccacaaagaaactaaaatttattgtcCGTGCACTAATTTGAGGAAAAAGGCTGCATGTAATTTGGTAATGAGTGGAGATATAGCAGTTGCTTGTGACAGTAGTTGTGAGGCCAAAAAATTAGCCATCCAATTGGAAAAGGAAAGAGAAGAACGTAGAGTAAGAGaattaaatgaagaaaaaaatcgCAAAGAATTAGCTGAATATGAATGGAAATTAAGTGgtaaaaagaagaagaataagGAGAGGAAGATTGTTAAGacagtaaataataaaagtgcACTCCAGAAATACTGGGGTGCTATTTTATCAATTGTGATTATTTTGACTGCTGTGGCTTATATGCTTATAGAATATTAA
- Protein Sequence
- MTTRYRDAVAKLQQNVQKHLKELKEFSSSDDDEPYDSNVLDSVFRSYKRDGGDIYMLDRTQHLLEEAISGRAITCLICIGSIKRVDPIWTCDYCYCNLHLSCIQKWANDSISLKNEEIHSSLPILISRKIEWCCPKCRKSYNKHDIPQQYRCYCGKSVDPQYHPWLIPHTCGEVCEKYLSNRDNCKHKCLLLCHPGPCPPCPQTVNSTCFCGQEQKRVRCSAATWSCGQQCKRTLLCNSHKCESICHPGECSLCKYVSIQPCKCGSEEAERPCNNPSWQCDKVCNKLFSCGYHMCERQCHSAGCGICPNSGLQSCPCGAEKKFVQCPDVIKTCLGTCGKRHKNCEHNCPEKCHKGACPPCQVLTEKKCLCSTHSRMLPCSKEFKCETKCRGIRLCGKHACGRKCCNGNCPPCEKVCDKPLQCGRHKCTMICHRGPCYPCSRESKVTCRCKESFISVLCGRERFIKPPKCIKLCKLKYKCGHVNENSHVCHFGACPPCKTICNKPFLNCEHRCRLVCHENVAVVFKQVEKPATPWEITPPITKIMSLECPPCEVPVPIVCFGEHETVNQACSVARRHCCGRTCSQPLLCGNHKCSLLCHLYTEDSLYPNVPYNCNQCELDCNKIRPDKCYHKCALQVCHPGPCPPCEILEYISCHCGLTKLYLRCREISTATDEMLSCKLQCPRNLSCGHRCKSICHAGMCGVNQICHKETKIYCPCTNLRKKAACNLVMSGDIAVACDSSCEAKKLAIQLEKEREERRVRELNEEKNRKELAEYEWKLSGKKKKNKERKIVKTVNNKSALQKYWGAILSIVIILTAVAYMLIEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -