Sinc040410.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071647.1:5821211-5838970[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.2 1e+03 2.0 3.4 1 23 345 368 345 368 0.87 2 11 0.043 7 8.8 0.8 1 20 405 424 405 426 0.91 3 11 1.2 2e+02 4.2 1.1 1 20 862 881 862 884 0.91 4 11 1.5 2.4e+02 3.9 0.1 3 13 891 901 890 903 0.85 5 11 0.01 1.7 10.7 0.1 2 23 992 1013 992 1013 0.95 6 11 1.3e-05 0.0022 19.8 1.1 2 23 1029 1050 1028 1050 0.97 7 11 0.00021 0.034 16.0 3.5 1 23 1056 1078 1056 1078 0.98 8 11 0.0005 0.082 14.8 5.0 2 23 1084 1105 1084 1105 0.97 9 11 9.3e-05 0.015 17.1 3.3 2 21 1112 1131 1111 1132 0.95 10 11 9.4 1.5e+03 1.4 0.2 1 12 1141 1152 1141 1154 0.90 11 11 0.00038 0.062 15.2 0.2 3 23 1173 1194 1172 1194 0.96
Sequence Information
- Coding Sequence
- ATGGAAATTATATCTGACTCTCAAAACGAAAGCCCCAGAAAGGAAAAGCCGGAAACGCGCACGTCATACGAAATTGAAGAGGAACTTCAGACACATTTAATTTTGAAGGCTCCAGAAGACAGAGCTACAATAAGCccaataacatttaatatagaTGTGGCTGTTGAAGAGGTGGATGCAGAACTAGAGGCTGCTGTTgcaaatttaaatgtttataagaCTTCAGAGCAGACTGAAAGTGAAACATGTGTGGCTTATACGGATTCCCAGATTGTTTATAACGCTCAGTACTCAGAAATACAAACAGATAATGATTTAGAAGATAATTCTGGGCCTGTGGTATTTAATCACAGCATTACAGTTGAATCCCAGGAACAAAAAACctctaaaaataagaaaaaaagtgTAATTGATGATGACGAAGCGATCAGCATTCCAGAAGATTctgtaatattaaatgaaaaagagGTGTATAAAAAACTTGATGAGTTAGCACAACAACAATTGAGTACTACTGATAAAATTCTTCTTGTAGAAACAAGAAACACATGGGGACGGGTTCTTTTTAAATTACCACAACGAAATCAGCatgatagtaaaataaagtacTGCTTGGAAAATGTATGGAAACAGTGGCAGTCAACGACAAGACTTCGTGACTATCCTTTATTTTATAAGTGTTACATGTGTGACAAAGCTTGGTGGCACTTATATCCATTTGCAGATCACATTAACAATCACCATCATGTCAGTATTAAGTTGAAACTTGAATGTAAGGGCCATGAATGCTCCATCATTGCCTTCAAGGATGAAAAGCCACCTATTAGAGATATACCACTTGAAAATGAGTGTTGGCGCTGCGGGAATGACTTCAAATATCACCAGAATGAAATACAATTTGATCATGCTGTGTATACCTGTTCTTATTGTGCCAGTAGCTTCTACACCTGCTTCCAGCATAAAGAACATTTGCCAGGATGTATGCAATACAGAAAGAATCTGCGTAAAAATACAGATGCTTGCTTGCAATTCTACAAATGTCAtttatgccaaattattttgaCATCCAAAGAGGATTCATTTAAGCATTACTCTTTTTACCATGATGTGCGCTCTGATTTGCCCATTGCCACTCAAAACAAGTTCTGTCCGTTCTGCGACCAGATTTACTGTATTAAATTGCTCCATATTTGTCCAAATGGAAATTTTAATCACTCATGTCAGTATTGCAGCAGAAGATTCCCATCAAAAGTTATGGTCCAATTGCACACAAGTATGACACAACAAGATTTCCCTTGTCGCATATGTAGCATGGTGCTGGACTCGCAGTGCATGGAGATTAAGCATTTGGTTGAGAGCCATTCAGAAAAGTTTGTGCTCGTACCGAAATGTTTGAAATGTGATAGTAATGTGTTGTTGTTGAACGAGGATTGTATTTGGCAGCACAGCTTAATCAAACACAACCAGAAGTTGCGCCGACAAAGACATGTTGAAATGGTCCTAGTGCCCAAGGATTGTTTAAGTCTAACCGAGCTAGAACTCTTAAAAGTTCCCAAGAAGGaAACTGATGTAGTGACTCAACAGCCTCCATTACACGACCTTGTTGACAATgacattaacattataattactaaaactGAGTCGTTGGTGGAGGACGGCGTTGAAATTATAGACATTGCTGATCCTTCCGAGTTGTTAGATGATGAGCTGCAAAATGAACAATCACACACGGACTTGGAACAAATACAAGAAGCTGTAATTAAGTACGAAGGGGAGACAGATGATGAGATTATAATCATTtatgataatacaaaaataaaatgtgtagATGAATTGAGAAACACACTGATTCCAATAGAAAAAGAATGTAAATCTTCAGACAAAAGTAAAATTGATTCATCAAGCAATAATGAAGTGAACGAAGaatCTTCCAATGCAGTTGTAAAAATCAAAGAGGAACCACCAGACATAGGAGTGGTTATAAAAGCAGAACCAGTTTATACCACACCTGATGACATTTCGGATACAAGTAGAGAGACAAATAGCAAAGAACGAACCGACGaaagtgcaaaaataaaattaccagcTCCTAAACAATTCAAGATAAAATACGAAGACGATATAGATTTCGTCGAAGACATAATCGTTTTGAAGCAAGAGAATGATTCTAATGTGACGCATAGAGAGGACAGTGAAAATACTAGTGACAACAGTCTTCTCAGGAAGGTGTTCGGTATAAATAAAGATGCAATGGTAACTAATACAGAACTAGCCAATGTGAAAGTCGAAGTCGATACAGAAGACGATATTTCCGTTGTCGAGCCACAGTTGGTAGAAATTGAAATCTTAAGTGAAGATGAATCTGAGCACATAAATGTTGAATTAGAAGAAATCTTAAATGAACACACAGAACTCAATAACACAGAttcaaactttacattaatgGATACTAATATGCAAGCAGAAACAGATGTTGCATCATTAATGAATCCAATTGAAGcacaaaattatacatacatgaagaaaaatgttaagaaatcagtaaaatacaaaatccttaAACTGTTTGCAAAGGTAGATTATTTTACTTGTACTAAATGTGTAATTCAGTTCGACACATATGAAAAGTACATGTTACATTTGCCTAAACATGGTATTGAAGAAGACCTATGTCCTATATGTGGTAAAAAATCGAGAACCTTGAATCACTCTGACTGTTACTTGTGTTCAGCCTACGGTGGatttaaaaagaacaaaaagaaCAGTGAGGATTTATCATTGGAATGTAAGATTTGCAAAGAATATGTGGATGTAAGAAACAGATTTTCACACTGGGAAAGTCACGTGGTTCATTTGTTGGAAGCTCCAGTCTCTGTTCTGGCTGGGTCAATACAAGACTCGATCAAGCGACTTGGGAAACACAGCATTGACTATATAAGAAGGACATTGAAGATGAAGAAATTGAAGAATCGTACATGTGCACTATGCTTAAAGGTGCTGGCGCGGCAGGGCGAGTTGAAGAGACATCTAATAGAACATCTCTTGAAAGACGCTCTCGCCCGTTACGAAGATCATAATGGACTTAGGTGTCACGAGTGTCCTAAGGTCTTTGAGAAAGCTGGTCTGTTTAGGCAGCATATGAGGGAGCATGCATGCATGCCAATGTATCGTTGCGAGATATGCTCCAAGTGCTTTAGTGATTCCAGCAACAGCGCCAAACACAAGAAGGTGCATAAAAGCCAGCTCCCCGAATGCGACATCTGCGGGAAGAAGTACCACCATCTCCACACTCTGGCGCGTCACATCCAGacGCACGAAACAATAGGCGTGATCCATTGCAAACACTGCGAGAAAAAATTTTACTCGCAAACCGCTTTGAAGAAGCATATGCGTTTAATCGCTGACAAGATTGGCTATCGGTTCCCTTGTGCCATATGCAAGGCCAAGTTCAGGTCGGTGAGGATCAAATGGGACCATATGTGGCAGGTGCACAAGCAGAGGAAGGAAATCGCCGACTGTCCCATTTGTGGGGAGTCTTTCCGCAAataCACAGATGTAAGGCAGCATGTGATCACCACACATCCGGGCAAATTGCCAATGACTCTACTGAAACAGATGCGAGTGAGCCGGGACTACTATCTCGCTCGGAAAGACCTGAGTCCTTCGACATCTGTCTCACCAGCTCCTGTAGACCATGACATATTCACAAAAATCAAGATGGAGTATGAAAGCGACAGTTAA
- Protein Sequence
- MEIISDSQNESPRKEKPETRTSYEIEEELQTHLILKAPEDRATISPITFNIDVAVEEVDAELEAAVANLNVYKTSEQTESETCVAYTDSQIVYNAQYSEIQTDNDLEDNSGPVVFNHSITVESQEQKTSKNKKKSVIDDDEAISIPEDSVILNEKEVYKKLDELAQQQLSTTDKILLVETRNTWGRVLFKLPQRNQHDSKIKYCLENVWKQWQSTTRLRDYPLFYKCYMCDKAWWHLYPFADHINNHHHVSIKLKLECKGHECSIIAFKDEKPPIRDIPLENECWRCGNDFKYHQNEIQFDHAVYTCSYCASSFYTCFQHKEHLPGCMQYRKNLRKNTDACLQFYKCHLCQIILTSKEDSFKHYSFYHDVRSDLPIATQNKFCPFCDQIYCIKLLHICPNGNFNHSCQYCSRRFPSKVMVQLHTSMTQQDFPCRICSMVLDSQCMEIKHLVESHSEKFVLVPKCLKCDSNVLLLNEDCIWQHSLIKHNQKLRRQRHVEMVLVPKDCLSLTELELLKVPKKETDVVTQQPPLHDLVDNDINIIITKTESLVEDGVEIIDIADPSELLDDELQNEQSHTDLEQIQEAVIKYEGETDDEIIIIYDNTKIKCVDELRNTLIPIEKECKSSDKSKIDSSSNNEVNEESSNAVVKIKEEPPDIGVVIKAEPVYTTPDDISDTSRETNSKERTDESAKIKLPAPKQFKIKYEDDIDFVEDIIVLKQENDSNVTHREDSENTSDNSLLRKVFGINKDAMVTNTELANVKVEVDTEDDISVVEPQLVEIEILSEDESEHINVELEEILNEHTELNNTDSNFTLMDTNMQAETDVASLMNPIEAQNYTYMKKNVKKSVKYKILKLFAKVDYFTCTKCVIQFDTYEKYMLHLPKHGIEEDLCPICGKKSRTLNHSDCYLCSAYGGFKKNKKNSEDLSLECKICKEYVDVRNRFSHWESHVVHLLEAPVSVLAGSIQDSIKRLGKHSIDYIRRTLKMKKLKNRTCALCLKVLARQGELKRHLIEHLLKDALARYEDHNGLRCHECPKVFEKAGLFRQHMREHACMPMYRCEICSKCFSDSSNSAKHKKVHKSQLPECDICGKKYHHLHTLARHIQTHETIGVIHCKHCEKKFYSQTALKKHMRLIADKIGYRFPCAICKAKFRSVRIKWDHMWQVHKQRKEIADCPICGESFRKYTDVRQHVITTHPGKLPMTLLKQMRVSRDYYLARKDLSPSTSVSPAPVDHDIFTKIKMEYESDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -