Sinc021830.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- zfh1
- Assembly
- GCA_036419045.1
- Location
- CM071635.1:1767386-1778248[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.3 1.5e+03 1.4 1.2 3 21 456 474 455 478 0.91 2 13 0.0082 1.3 11.0 0.8 2 22 500 520 499 523 0.89 3 13 0.0034 0.55 12.2 1.2 1 23 537 560 537 560 0.97 4 13 0.069 11 8.1 3.7 1 22 565 586 565 589 0.89 5 13 2.2 3.6e+02 3.4 0.8 2 23 610 634 609 634 0.88 6 13 0.023 3.8 9.6 0.2 2 21 640 659 639 660 0.93 7 13 9.4e-06 0.0015 20.3 1.0 1 23 719 740 719 740 0.98 8 13 0.0032 0.53 12.3 2.9 1 21 746 766 746 769 0.88 9 13 0.00014 0.023 16.6 3.1 2 20 793 811 792 813 0.94 10 13 0.077 13 8.0 1.4 2 23 817 840 817 840 0.93 11 13 0.014 2.2 10.3 3.6 1 21 847 867 847 869 0.96 12 13 0.0052 0.85 11.6 2.8 1 21 875 895 875 900 0.92 13 13 0.00064 0.1 14.5 0.9 1 23 906 929 906 929 0.95
Sequence Information
- Coding Sequence
- ATGCTGTCGCCGCGCGATGACGACGATGATGACAGCCACCTCTGCATCAAATGCAGCATCACTATCGTCGGCCTTGATAATTACGTCAAACACAGGAAACAGAGATGCGGCAAATTGAAAACGGACACTCCGAAACCGGATATTCCGAGCATCGACTCCTTGGACCCAGCTTATAGCCTCGGAGCAGACGTCTTCTTCCAGTCGCTAGAGCTACAGAGTAGCGTCAAAAAATCTTCCCTGTCGAGATTAACACCGCCAATACCAATATCCAAAACCGTTCTAGATCCGAAAGTAAATCTGATAGAACCTTCTTCATCACGTGACACACCTCGGATGAGCCCGTTAGGCTCCAATTTACGTGAAGCCGACTGGATAGGCGGACACTCCATAAAGATCAGTAGCAATGAGGATAATCAGACTAAACTAATAAAAGCGGTTGCAAGCATTAGTGGCAACGCAAAGAAAGAAATTCCAAGATCGACTTACAGTATTGCAGcttacaatgattttaaatgtgACGAGGACTTTGATGACTTGGACGAATCTGACGATGACGATGAAGAGGAACCGCACGCTAGCGTTAGCAAATGGAAACCATCTCCGAATTACACTGGTGGAAAATGGCGACCTGTTTCTCCAGACCAGGAAGATTGGGATATAAGAGACGAACAGGAACATACGGGTGGCAAATGGAAACCAATCATGACAGATTCGAATGAACGAGATGAAGACTACGACGCTCCACCTCCTAGTCACACGAAAGGTAAATGGGTCCCGGGTCACGAAAAGACACAAATAATGCAGCCGACTATACAGACAAAGGGATCTATACAGTTTTGGTGTGGACCTTGCAATCGCCGCTTAGGTTCACGTGCCATTTACGAGAAACATCTGATGTCTAGTTTACACATGAGAAAAGTTCAGCCTGAACACGAATTAGAGTTTTCAGGGCATTTAGAACCTCTGAGACCTATAAAAAGGTCTTCCCGTCCGTCTCGTTTCAGCAATGATAGTGTTCATGTTCACAGTCGTAAAAAAAGCAAGCCAAAACTGACAATTAAGATTGAGAAGAAGAAACGGAAGAGAAAACCTACTTTCGTTCATTGCTCAGGTTGCAAATCACGCGTGAGGCTGCACCTGATGGGGAAACACTTGATTTCTCACTATCATTTTCGTAAAGCAACAGATATAAAAAGTGCACCCTACCAGCAGCTGATTTTGGACAACATAGACGCTATTGTCCACCAGTCACCATTTCAATGCAGCCCCTGTAAGTTTTACAGTAACTGGCTTTCGAATTTCTTGCAGCACTGGTTTTCGGACGAACACGAGCATGTCGTAGCCTCTATGGAAGGCCGATTTTGGTGCTCATTCTGCAAATTTGAGTGTGAAACCTCTCAAGAAATGTTAGAGCACATGTCTGGATCAGATCACAGTGAGGTTGTAGCTGTCATTAACAGATCAATGCCTataattataagaaagaaaTCCGTGTTGAAATGTGAAGTTTGCAACGAagagtttaaatataatattgaaatgaaaaaacATAGCAAGAGAACCGGTCACACTCTTCCATACACTGCTTCAGATGATTACCAAGAATTACACAAATGCCAGGCCTGTGAGGCGAAGTTCAAGTCGTCTGTATCGCTCGCGGCTCATTTAAAATCGAAGCACAAGCAAAAAGCTTACTGTTGCCTTGTTTGTTCCAAAACATTTAAGACTTTTGATGAAGCGAAAAGTCATCGTTACACGTCAGAACATAGGATTAGGAAGAAAGAAATTTTATTCGACAAGGGATTTCCTGTGAAGAATTTAAGAAAGAAATGCCATTACTGTTCGGATAACGTGGTGTTAAAGAGCGTTTTGGAGTTGAAGGAACATATTCGTACTGTTCATCCTGATATAAGAAAGAGATGCCCCAAATGTGGTATGTCATTTATCCTGTTCCAAGAGGTCAGTCGCCACATCAAAAGCAACTCGTGCCAGTTCCAGAACGTCCACCCAATTAACTCCACGATCCTCTGGAACTGTAGCCAATGCCTGTTTAGCACAGATTCCCAGGCTGAGTGCTACTTCCACGAAGTGTTACACTCTGAGCCTCATAAGGAATATCGGAAAAGACAAGACGTCAAGATTTTGGTAGAAAAATATCCGTGCCCTCTATGTTCTAAGAGTTTTACAAAGAAATCGCTCCGTCAACATTTGAGAGTGCATACATTCGAAAGGCCCTTCGCTTGTTCTACGTGTGGCGCTAACTTTACGACGCAGTCCAGCCTCTCCAACCATTGCAAGAATAGTCACCAACCACGGATCTCCAAAAATTTTCCCAATAAGATAGTCGTGCCAGTGACGAATAGAAGCGACGACTGGAAGTGTACCAAGTGCAGCAAAACGTTCTCAAACCGGAGCGGGTTGAGCCGCCACCGCTGCGACGCGGGCCGCCGCTGCCCCCACGACGGGTGCTCCTTCGTCGCATCCACTCCTGCGCATCTCACCAGGCACAGAATTTTTCATGGGGAACAGATAAAAAACTACGAATGCACATTGTGTCCTTTCAAAACGAATCAAGCGAGCCACATGGAAAGACATATTCGATGCCACAACAATTTGAAGCCCTACGCTTGTCCTCATTGCAATTTCACCTGTGGTAGTTTGGAAAATTTACGCAAACATGTTTTGAAGAGCTCCCGACATCAGGGCATGTTTCTCTACCAGTGTCCTTTGTGCGACTTCCAGTGCAACACAGCCACCGACTTACGCGCGCATTTGACCAACGACCATCCCGACCACTACACTGCTAAAACGGCGGTGCAGGCTGTGAAAATGATATTGATGAAGGGTCCTGTATAG
- Protein Sequence
- MLSPRDDDDDDSHLCIKCSITIVGLDNYVKHRKQRCGKLKTDTPKPDIPSIDSLDPAYSLGADVFFQSLELQSSVKKSSLSRLTPPIPISKTVLDPKVNLIEPSSSRDTPRMSPLGSNLREADWIGGHSIKISSNEDNQTKLIKAVASISGNAKKEIPRSTYSIAAYNDFKCDEDFDDLDESDDDDEEEPHASVSKWKPSPNYTGGKWRPVSPDQEDWDIRDEQEHTGGKWKPIMTDSNERDEDYDAPPPSHTKGKWVPGHEKTQIMQPTIQTKGSIQFWCGPCNRRLGSRAIYEKHLMSSLHMRKVQPEHELEFSGHLEPLRPIKRSSRPSRFSNDSVHVHSRKKSKPKLTIKIEKKKRKRKPTFVHCSGCKSRVRLHLMGKHLISHYHFRKATDIKSAPYQQLILDNIDAIVHQSPFQCSPCKFYSNWLSNFLQHWFSDEHEHVVASMEGRFWCSFCKFECETSQEMLEHMSGSDHSEVVAVINRSMPIIIRKKSVLKCEVCNEEFKYNIEMKKHSKRTGHTLPYTASDDYQELHKCQACEAKFKSSVSLAAHLKSKHKQKAYCCLVCSKTFKTFDEAKSHRYTSEHRIRKKEILFDKGFPVKNLRKKCHYCSDNVVLKSVLELKEHIRTVHPDIRKRCPKCGMSFILFQEVSRHIKSNSCQFQNVHPINSTILWNCSQCLFSTDSQAECYFHEVLHSEPHKEYRKRQDVKILVEKYPCPLCSKSFTKKSLRQHLRVHTFERPFACSTCGANFTTQSSLSNHCKNSHQPRISKNFPNKIVVPVTNRSDDWKCTKCSKTFSNRSGLSRHRCDAGRRCPHDGCSFVASTPAHLTRHRIFHGEQIKNYECTLCPFKTNQASHMERHIRCHNNLKPYACPHCNFTCGSLENLRKHVLKSSRHQGMFLYQCPLCDFQCNTATDLRAHLTNDHPDHYTAKTAVQAVKMILMKGPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01332067;
- 90% Identity
- -
- 80% Identity
- -