Basic Information

Insect: Scirpophaga incertulas
Gene Symbol: -
Assembly: GCA_036419045.1
Location: CM071630.1:17464642-17476589[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.024 4 9.5 3.8 2 23 38 59 37 59 0.95

2 15 7.8 1.3e+03 1.6 2.1 1 19 68 86 68 88 0.85

3 15 0.024 3.9 9.5 6.9 1 23 97 120 97 120 0.97

4 15 2.6e-05 0.0043 18.8 0.8 1 23 124 146 124 146 0.96

5 15 3.5 5.7e+02 2.7 1.6 1 19 154 172 154 176 0.75

6 15 4.8 7.8e+02 2.3 0.3 1 8 181 188 181 203 0.86

7 15 1.1 1.8e+02 4.3 3.1 1 19 265 283 265 287 0.84

8 15 7.3e-05 0.012 17.5 0.3 1 23 293 316 293 316 0.94

9 15 0.1 16 7.6 7.0 1 23 326 349 326 349 0.96

10 15 0.19 31 6.7 0.1 1 23 354 378 354 378 0.94

11 15 1.9 3e+02 3.6 3.0 2 23 384 405 384 405 0.92

12 15 0.0003 0.049 15.5 0.9 1 23 410 432 410 432 0.98

13 15 0.00042 0.069 15.1 3.3 1 23 438 460 438 460 0.96

14 15 2.5e-05 0.0042 18.9 1.7 1 23 466 488 466 488 0.98

15 15 1.5e-06 0.00025 22.8 0.5 1 23 494 517 494 517 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.024	4	9.5	3.8	2	23	38	59	37	59	0.95
2	15	7.8	1.3e+03	1.6	2.1	1	19	68	86	68	88	0.85
3	15	0.024	3.9	9.5	6.9	1	23	97	120	97	120	0.97
4	15	2.6e-05	0.0043	18.8	0.8	1	23	124	146	124	146	0.96
5	15	3.5	5.7e+02	2.7	1.6	1	19	154	172	154	176	0.75
6	15	4.8	7.8e+02	2.3	0.3	1	8	181	188	181	203	0.86
7	15	1.1	1.8e+02	4.3	3.1	1	19	265	283	265	287	0.84
8	15	7.3e-05	0.012	17.5	0.3	1	23	293	316	293	316	0.94
9	15	0.1	16	7.6	7.0	1	23	326	349	326	349	0.96
10	15	0.19	31	6.7	0.1	1	23	354	378	354	378	0.94
11	15	1.9	3e+02	3.6	3.0	2	23	384	405	384	405	0.92
12	15	0.0003	0.049	15.5	0.9	1	23	410	432	410	432	0.98
13	15	0.00042	0.069	15.1	3.3	1	23	438	460	438	460	0.96
14	15	2.5e-05	0.0042	18.9	1.7	1	23	466	488	466	488	0.98
15	15	1.5e-06	0.00025	22.8	0.5	1	23	494	517	494	517	0.97

Sequence Information

Coding Sequence: ATGACCTCTCCATCAAAATTAATCCCCACAGGGTTGGCTCCCGAGCATGAAGACGCTTTTGACATTTTAAAAGGAATCAAACTGACCACAATCGATATCGTCGGAGGCATTTATTGTCATATATGTCATTTAACATTTGGAAACAAAAAGGAATTTGATAGTCATTATGTAAAACATGGCGTTAGCAACAATGATCTAGTGTACACTTGTGTGGTATGCTATAAAGAGTTTGTGGGATATCCCAGTTTCCGTGGACACTGCTATTTAGTTCATGTAAACAAAGACAAATACAAGTGCGAACATTGTTCAAGATTGTTTTCCAAGCACTGTGTCCTTCAGGCTCATATGAAAAATGTTCATGAAACAAACTATAAATGTGAAATTTGCCAGAAAGAATTTAATAGCAAAAAAGAACTTGCCATCCATAAAAGCTTACACAAAACTCAATACAGTCCACCATATGATTGTCATGTTTGCGGAGAAAAATTAGAAACAACAGACGACTGTGAATACCATGTAGATGACCACTGTTCTATGTTCTACTCGTGTCCAATTTGTAATGAAGAAATAGTAGACATACAGAATGCCTCCTGCCACTTAGTAAAACACTTTGGTGATTTGGAAAAGAAAGATAATACACATTTTGTAAATTCTGAATCAAATGAAATACCTAATGACAGTTCTATCGATTTTCTTGGAGGAATATTTTGCATTTACTGTGATAACACTCACAAAACAAGGGTGGACTTTGATAACCACTGTGCAGCAGAACACCCTGAGAAAGATATAGTATATGCATGCAACATTTGTGGAAAGGAGTGtgacaaatatttaatgttggCTAGTCACTGCTACAATCATACTACTAAAGACAGATTTCAGTGTGAGGAGTGTTCTAAAACGTTTGATCGCCTGGCTAAGTTGGTATTGCATATGGATGCTTTCCATTCGGATTCGCGTCCCGTGGAATTCCCGTTCTCATGCGCACACTGTGGCCACCGATTCAAGTCGCACCTGCGTCTCAAAGACCACGTCAATTCGAAGCACAACATCTACAAGTTCCAGTGCCAGGAGACAGGATGCGGCCAGATctTTGCAGCGCCAAAAGATCTGATGTTTCATTTGCAAGAGCACAGTTCAGTTGGGAATAGATGCCAGCAATGCGGGCTTCGTTTTTACAGTATGCAAGCCTGCGAGAAACATCTCCAATTTCACAAGAAAAAACTCTACTCATGTCCCATCTGCAATCGACAGTATAGCGAAAAGTATATGGTCATGAAACATTTGAACCAGCATTTTTCATCAGTGTTCCACGCGtgcaaaatttgtaataaaatatacagcCATAGAAACCGTCTAGTAGAACATATGAAAGTGCACAATGAAGTCAGACCTTTTGTTTGCTCATTTTGCAGCAAAGGCTTCacgaaaaactatttattaaaacagCATCTAAATGTTCATACTGGTCAGAAACCATTTAAATGCACAGTGTGCCCAAAAACATTTGCAAGTGATCCCAATTTAAGAAAACATCTCCGCAACATACATGACGTGCGTTTGGAGAGACGAAATATTACAAACGAGAATAAATACCATAATCGTAATGAAGAAGTTGGCTTACAGTGTTCATTAGCCGATGAAAATTTTGAGGCTAGTATTATTGATACAGTGATGCTTGACAATAACAATATTGAAGAGAATCTGCAACAGGAACAAGCCATTGAAATGTTTGTTGATATGAGTAATGTTATCTACAATTTTGATGAATCTAGTGAGTCGTGTTCTCAGTGGTCGGCTGAAGTAGATCCTATGTTACAAAAAGTCGAGGGGGAGGGACAGGTTAATATGACCACACTTAACTTGGATAATGTTCAGAACGAGCTTTGGGTGAATACTTCTGCCATACTTGAGGCGTCGCGCGATTGTCAGCCGTTGGTGCCGCGGGAGTATGGGCCTGAGTTCGTAACTGGCGGCGAGAATGCGCGTGCGGGAGATATCCGCCTCGACGACGCACCCCTGCCGCACATCGACCCGCGACTAACATTACTTCCCCAACAAGACCTCAATCAATGCCTCGACTTCCCCCACGACGACGCTCAGCACTGGGCGAATGCCAACGTGTACGATGCGCGCGCGCAGATATATCCAGACGTATACTAA
Protein Sequence: MTSPSKLIPTGLAPEHEDAFDILKGIKLTTIDIVGGIYCHICHLTFGNKKEFDSHYVKHGVSNNDLVYTCVVCYKEFVGYPSFRGHCYLVHVNKDKYKCEHCSRLFSKHCVLQAHMKNVHETNYKCEICQKEFNSKKELAIHKSLHKTQYSPPYDCHVCGEKLETTDDCEYHVDDHCSMFYSCPICNEEIVDIQNASCHLVKHFGDLEKKDNTHFVNSESNEIPNDSSIDFLGGIFCIYCDNTHKTRVDFDNHCAAEHPEKDIVYACNICGKECDKYLMLASHCYNHTTKDRFQCEECSKTFDRLAKLVLHMDAFHSDSRPVEFPFSCAHCGHRFKSHLRLKDHVNSKHNIYKFQCQETGCGQIFAAPKDLMFHLQEHSSVGNRCQQCGLRFYSMQACEKHLQFHKKKLYSCPICNRQYSEKYMVMKHLNQHFSSVFHACKICNKIYSHRNRLVEHMKVHNEVRPFVCSFCSKGFTKNYLLKQHLNVHTGQKPFKCTVCPKTFASDPNLRKHLRNIHDVRLERRNITNENKYHNRNEEVGLQCSLADENFEASIIDTVMLDNNNIEENLQQEQAIEMFVDMSNVIYNFDESSESCSQWSAEVDPMLQKVEGEGQVNMTTLNLDNVQNELWVNTSAILEASRDCQPLVPREYGPEFVTGGENARAGDIRLDDAPLPHIDPRLTLLPQQDLNQCLDFPHDDAQHWANANVYDARAQIYPDVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -