Sinc024584.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071636.1:17106530-17133225[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.071 12 8.1 0.1 1 23 493 515 493 515 0.90 2 13 0.00017 0.027 16.3 0.0 1 23 525 548 525 548 0.96 3 13 0.063 10 8.2 3.0 1 20 665 684 665 686 0.94 4 13 0.028 4.6 9.3 3.8 2 23 734 755 733 755 0.95 5 13 0.0022 0.36 12.8 1.3 1 23 767 790 767 790 0.91 6 13 0.0019 0.31 13.0 4.0 2 23 797 820 796 820 0.96 7 13 0.055 8.9 8.4 0.2 1 23 826 848 826 848 0.93 8 13 0.0017 0.28 13.2 3.3 1 23 854 876 854 876 0.98 9 13 0.032 5.2 9.1 0.1 2 20 887 905 886 907 0.91 10 13 0.017 2.8 10.0 0.4 1 23 985 1007 985 1007 0.98 11 13 1.6 2.6e+02 3.8 7.2 1 23 1014 1036 1014 1036 0.95 12 13 0.0025 0.41 12.6 1.6 1 23 1075 1098 1075 1098 0.94 13 13 0.00038 0.063 15.2 1.0 1 23 1105 1128 1105 1128 0.98
Sequence Information
- Coding Sequence
- ATGTCAGAAAATACCGTACCACTTGTTGTATGCATGGAAAACCTGAATGGCGAAGAAGTGTCTTTGAGGGTGGATCCTGAGGATGACTTCCAGACATTTCTATCTAAGTCTAAaTCAGTTCTTGGTTTCGACATTGATCTGAACTCTATAACTAAGAATCAGCCAGTTAACTTAAAcgataatatttatgaatttttaacGAGCTCTGAGCACGACGCACCTGGACTGCCTATAAAAAACATAGACCAAATTAAGTCGGATAACGACAatgatcttatttatattttagacgATGGAACTCAAATAAAGGCATCGCAAATACATTTCGATAACGATGATCCTATTACAGACCTCACAAATGAAAATATTCCTTTCGTTAAATATACAGACGATGATTATAATGAGGCAGAAGATGTGATTTCGGATGAAGtgaaaaagataaatatagtTGATAGTCCAGTTTCACGATACTCAAGTAAAACATCTAGTCCAAAATGTAGGTTTGTTAACAGCCTTCCATTTAAACTAGTATGCAATAATACGTCAATTTTTGAAGCGcagtttacaaaatacttagaATCTAGTATAACTAAGACATACACAAATTTGAATCcaaattctaataataacaaGACTCCGAAAGATCCTACAAGAGATAGTTATAAAAAACAAGATGAGAAGTCTAAAGATGATGAATTTACTGGATACACAAGGGAAGATATTCTCAATATGTTTAAAGATTCGCCGCTTGCATCACTTCCTTATGGTAGCAATTTTACTGGTAAAAGAAAACATGCACGCAAAACTGATCCCTCAAAGACAGGCTCGAAGTATTGGAACtctaaatcattaaattatgatGAAGGAATATTGATTGGTGGCTTTGAAAGTCAGAATTGTTTGATATGCGGCAAATTTGTCGAAAACAACTTAGAAAAGATTTATCTTTTTGACAACGAAGATCAAAGGCTTCATAGGTCGTCACCCCAAAAAAAGTCCTCGAGGCAATTGAAGATTATTTGTGAGTATTGTCTCGAGGAACATTTTAAGCCTGGTCGAATGAAAGGTCCTAATCAAAGCCTAAGTCGTGATGAATATTTAGTCATCCGAAATAACCAGCAatacatatttcaaaaaattaataatattgatttaaatgtCAAGCAGAATGATACTTGCGGGGTCACATTAGCTGTTGATCTAACAAAAGAGAAGGATGAAAATGATACAGTGGAATTCGTAAATGTGGAAATTGGGTCAGATGGGGAAATAGTTACGAAACCCGTAGATGAAGATGCAAGGTCCTCTGATGATGTGATTATTGTGAAAGATATTACCAAGAACAGTTTCAGTGATGTCAACATTCTAGAAGCGCCGGTTACAGAAGAGAATATCGTAGATAATTTAGACGACGCTGATGAAGAGATAAGGATTTTTTTGGGAAAATACGAACATGAAAATACTGTGTCTGCTGAATTTAAATGCAGATTCTGCGATAAGGTTTTTGGGGAACTAGGAGAAGCAATTAACCACGTAGAGGAGCATAAACACAGCTGGGAGGAAGGAGTGGTATACCCATGTCCGATTTGTGAATACGgcTATGCTAACTCAAAATGGCTAAAAGCCCATCTAAAAGCTGCGCATTCGAAGGGAGGTGACAATGAAACTAGCGCGGAAGGTGATTTCAAGGCCAATTCGTTAACAGGATCCCCTGTAGCTAAACGTACTCGAAGCTCAGCGAAGAAATGTGAGGGTAATGGCGAAGCAGaTACTCCTGCAAAAGCTGTGGGCGAGAAACAGTCTCTCTCAGAAGGAGAAAggAATGCGCCATCGGACCTCATATTTAGGACGGAAGTGAAGCAAGAAGTTGTTGGCAGCAGCGAAGATGAAATATGGATTGTCCAGAGCGGCGACACGACTAACGATCAACTAGAAAGGCTTCTCACAGCTGCTCAGAGCACTAAGGACGCCGATAGCTCACCCAAACCAATTCACAGATGCGTTATGTGTAGCCAAATATTTTCATCACTCGATTATTTGAAATCTCACAAATGCCAGCAAAGAAGTAGAAAGAGAAAAACAACAAGTAAAAATAACAGCGCTGCTACTAGTGACTATAAAAAGGAAACGAATAAGGATTCCATTGTAAAGCCTCGTCGCCGAAGAAATAAGGAATTAAGCTCAGACCCACAGATAGTTACCTGCCATAATTGCAACGAATCATTCACGTCAAAAGTCCGACTCAAGTTTCACATGCAATTCCATGAGCCAACCAAAATGATGACAGAGAACGGTGACTACGCCTGTGAGGAGTGTAATCTGACGTTTAGCACTGAAACTGAGTTGTTTGACCACGTTCACTTCAGACACGACAAGCTGAAACGATGGCAGTGTCACGTCAAAGGCTGCGGAAAGACTTTCCATTTAAAGGCAACATTGACGAAGCACAGTAGATCCCATACGGACACTCGTCGCTACGTGTGCGTCACATGTGGCAAACGATTCCTGGACAAACAAACTCTAGATGAACACGGAGTGACACATTTGCAAATCAAACCGTTCCAATGCCACATATGTCTGAAGCAACTAACGCGTAGATCCCGTTTGAGAATGCATCTCAGAGCTCACGAAGAGGAACTTACTCCCAAATTGGTGCTTGTTTGCTCAGTCTGCAGTAGAGCGTTTAGGGATCAGGAAGATGCACAGGACCACACGTCTAAATCAACAGAATGCATTGCTATGTCTGCAAAGACACTAAAATTGGAACGTGAAGAAGTTATAATTACAGTCACTCCTACAGATGATGCTGTTAGTGAATCTATGAAAGTTGTTGAATCGAACATCTCAAAATCCTTGCCCAAAGAAGTGTGCAGTTCGCTCGCTGCACCGCTCCTATTCAGTTTAGGAGACGAGGCGAGAGCAATAATACGAGTTGTCGAAATTGAGAAGGTTTTCCGATGCGAATACTGTGAAGATGTGTTCTACTTGGAAGACGGTCTGAACACCCATCGCAAGGTTCACAAGAACGTTAAGAATCCGTTCACCTGTCACATCTGCAAAGTCAGCTTTGCGACATACTCCAGATGTACTACCCACAAAACCACTCACGGATTTTACAAGCGACCTCTAGCGGACGCTAAAAATCAGGATAACAAGGAGACATCAGCTGCACCGACTTCAAGGGGTATACTAGGATATGGCGGTTTTCCCGTTGTGAAACATTTTTTGTGTGAGGATTGTGGTCGCTCGTACCTTCACTGGACTTATTTGCAAGTTCATCGTCGCCTGAAACACATAAACGAAAATTTCTCATACAAATGTAACGTTTGCAATGAAATTTTTCAGAACAGTTGGAGCCTAGCGTACCACAGGAAGAAGTCTCACGGTGAAAACGGCGAACCAAGTGCTTCGTGCAGAATACCGAAACAGGATTACAGGTTACAGTCATCTCATAAAATGATGGATATACGAGTAGCATATATTGGCGTATAG
- Protein Sequence
- MSENTVPLVVCMENLNGEEVSLRVDPEDDFQTFLSKSKSVLGFDIDLNSITKNQPVNLNDNIYEFLTSSEHDAPGLPIKNIDQIKSDNDNDLIYILDDGTQIKASQIHFDNDDPITDLTNENIPFVKYTDDDYNEAEDVISDEVKKINIVDSPVSRYSSKTSSPKCRFVNSLPFKLVCNNTSIFEAQFTKYLESSITKTYTNLNPNSNNNKTPKDPTRDSYKKQDEKSKDDEFTGYTREDILNMFKDSPLASLPYGSNFTGKRKHARKTDPSKTGSKYWNSKSLNYDEGILIGGFESQNCLICGKFVENNLEKIYLFDNEDQRLHRSSPQKKSSRQLKIICEYCLEEHFKPGRMKGPNQSLSRDEYLVIRNNQQYIFQKINNIDLNVKQNDTCGVTLAVDLTKEKDENDTVEFVNVEIGSDGEIVTKPVDEDARSSDDVIIVKDITKNSFSDVNILEAPVTEENIVDNLDDADEEIRIFLGKYEHENTVSAEFKCRFCDKVFGELGEAINHVEEHKHSWEEGVVYPCPICEYGYANSKWLKAHLKAAHSKGGDNETSAEGDFKANSLTGSPVAKRTRSSAKKCEGNGEADTPAKAVGEKQSLSEGERNAPSDLIFRTEVKQEVVGSSEDEIWIVQSGDTTNDQLERLLTAAQSTKDADSSPKPIHRCVMCSQIFSSLDYLKSHKCQQRSRKRKTTSKNNSAATSDYKKETNKDSIVKPRRRRNKELSSDPQIVTCHNCNESFTSKVRLKFHMQFHEPTKMMTENGDYACEECNLTFSTETELFDHVHFRHDKLKRWQCHVKGCGKTFHLKATLTKHSRSHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELTPKLVLVCSVCSRAFRDQEDAQDHTSKSTECIAMSAKTLKLEREEVIITVTPTDDAVSESMKVVESNISKSLPKEVCSSLAAPLLFSLGDEARAIIRVVEIEKVFRCEYCEDVFYLEDGLNTHRKVHKNVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPLADAKNQDNKETSAAPTSRGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRLKHINENFSYKCNVCNEIFQNSWSLAYHRKKSHGENGEPSASCRIPKQDYRLQSSHKMMDIRVAYIGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -