Sinc023552.2
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071636.1:1479648-1505458[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0039 0.64 12.0 0.1 3 23 120 140 118 140 0.96 2 13 0.0016 0.26 13.2 2.8 1 23 243 265 243 265 0.99 3 13 6.9e-05 0.011 17.5 0.3 1 23 271 294 271 294 0.96 4 13 0.1 17 7.5 5.1 1 23 299 322 299 322 0.93 5 13 0.11 17 7.5 6.2 1 21 580 600 580 602 0.94 6 13 2.9 4.8e+02 3.0 1.9 1 23 609 631 609 631 0.96 7 13 0.007 1.1 11.2 2.6 1 23 637 659 637 659 0.94 8 13 2.1e-05 0.0034 19.2 0.4 1 23 665 687 665 687 0.98 9 13 0.0074 1.2 11.1 4.1 1 23 696 718 696 718 0.98 10 13 0.00058 0.094 14.6 0.4 3 23 768 788 767 788 0.97 11 13 0.0016 0.27 13.2 5.4 1 23 805 827 805 827 0.97 12 13 1.4e-06 0.00023 22.9 0.7 1 23 833 855 833 855 0.98 13 13 5.5e-06 0.0009 21.0 5.9 1 23 861 884 861 884 0.98
Sequence Information
- Coding Sequence
- ATGAGCCAAACAACTATTGAACTAGACCCATTAAGCTATGAGTACCAACAGTACAATTTCAATGCCGCCCCTGTCACGTCAAGCTATGGCTATGAAGTCAAAGTGGAACAAAACGTGTTGCTGGACCAATTCTTGAATAATGTCCAAGGGTCAGGTGACAAAGTTCTAACAAACATCAACGATACCTCCACCAGAATGAACAGTAACAaatgtaataatgaaaataaatacagtGACAACACCCAACCTCATGTAGATATGAAACCTCTACTAAATTTCAAAGTGAAAAAGGAGAAAAACAAAAAGAGCAGTTATTGGTCAGAGAAGATAACGGACCACAACTTTAAGTTTTATGGATGCTCCGTATGCAACATCAGCTTTGAAACTTTAGCAAATTTAGACCAACATGTCACTATACACAAGGACAGGATAACAAGCTATGATTTGAAAATAAAGAACATGTTGAAACGGAAAAAAATGAAGGAGGAAAAAAAGAAactgaagaaattaaaaaaatgcaagAAAGATGAACCTGCCCCTGAAGTAGAAATTAAGCCAGAAGATGGATATATTGGCAATGAGAAAGCTTCAGATTATAATGATGGAGTGAGCAATAATGAGAACAAGCCTACCAATGTAGAGAATGATGTTAAGCCTGTGAGCAATGGAAGCCTCGTTGAAAACAACAGTAATGATGACAAGGATAAATTGAATTTAGAGAAGATATATAAATGCTTTGCTTGCCAGAAGCAATTTACGTTAAGTTACTACCTCAAGCTACATGTCAGATCACATAcagATGAGAAGCCTTACACATGTGCGGTATGCGGCCAGTCCTTCATAACAGCAAGCAAACTCGGCAGGCACAACAAGAAGATCCACCTGGCAATCAGACACCAGTGCCGCATCTGCTTCAGGTTTTTCGCCAAATTTGAAAATTTGACGACGCATTTTGATAAGAAACATCCAGACGATAAATTAGAAGGGGAACCGTATGatTATAACGAGATCTTGCCGTACTTAAAAGAGTTAGAAGAAGAATTGAGGGTGAAAGCAGAGAGAGAGAAAGCATGCTCCAAAGAAAATGTAGACATATGGGGAGAAATAGACAAACCCAAAGAAGAGAAGGTACAAGATGCCACAGAAATTGAAGCTAAAGAGGAGAAGACAGCGGAGATCATGGTCGACAACGACATGAAGGTTATCGTGGAAATTGAGGAGGTGAAGGTAGATCCTCCTGATGTGGAGATCAAACAGGAGCCCGAAGAACCCAGCTGTCAAATCAAGTCGGATGACGAAGGCAGCTTGAAGGATGAGAGGTTTTCAGATGACGACTACTTCCCCTCTAACACGTGGGCGACGTCCCCCAAAACATCAGCGCCCCCCTCCCCCAACCCCCAACAAGCTCAAAGTCCTCCCAGTgcacttattgacgtcaacaaacaaaacaaaaaaaagcttaaaaaaaaaacaaaaaccttgtccgtatgtatgtataaggaaaaaaaatatattgactcgacacctgttcggaaattgggagagccttctcgagaagaacaggcaagaaacactgaagGCAAGGAAACGAAAACCGAATGTGAAGACAAAATGGCGGACGATGGACAAAATGGCGCCGAAGAGAATACCGACAAATTAAGgcaTCGTAAACGCAAAGGAAAAGTTAAAGTGGGCAAGAAGAAATCGACAAAGATGTCCCCAGGCAAGACTCGGCCGCACTCCTGTGATTTTTGCGGGAAGAAATTCCTTCACTTGGACACTTTGCAGgTCCATATGAAGTGCCACAGTGGCGAAGAGCGCGTACACAAGTGTAGCTTCTGCTTGGAGCTGTGCGACAGCGAGGCAGAGCTGCGGCAGCACGAGGCCTCGCACGCGGGGCCCAAGCCGTTCCTGTGCACGCGCTGCGGGAAGACTTACAAGAAGCGCGAGTCCATGGTGTACCACAGGAAGCTCCACGAGCTGGACAAGCAGTACACGTGCAACGTGTGCCCGAAGAGCTTCAACGCGGCGTTCAAGCTGCAGCGGCACCTGGCCAGCCACCGCGCCAACCAGTTCGTGCTCCGCTACGAGTGCCCCGTGTGCGCGCACATGTTCCACACCAAGTACCACGTGCAGATGCACCTGGCCACCCACCAGCGGGAGGGATTAATCGTCGAGGCGAACCGAAACGAGATTCTGGCGATGGTGTTGCAAAACGCACACAAAATACCTCGGCAGCAGGACGGGACAGGCGGCAGCGCGCTTACGAACGCGGCGCCAACGGACGAACGCTCCCGCATCTGCAACATTTGCGGGGAGATCTTCCAACATTTCTACTACTTGGAGGAGCACATCAAGGAGCACGGCTCCAAAATTGCCGTGGAAGACTTGGACAAGGACGAAATCAAGAAACATGTCTGCCAAGTGTGCAACAAAGGCTTCAAGCTTCACTACTATTTGAAGCTTCACATGTTCACGCACTCGAAAGAAAAGCCTTTTATATGCCAGCAGTGCGGAAAAGGGTTTATAACGAAGGGCAAGTTGAAAAGGCATTTGGAAACGCATTCCGGCCTGAAGAAGTACCAGTGCCACATCTGCCACAAGTACTTCACGCGCACCAGCTACCTGAGGATCCACGTGCGCACCATCCACGGCAACCAGGACTACAACTTCACCCTGGAGAAGCAGTGCAGGTGGAACGGCGGCGGGGAGCCCCACCCTGGCCAGCGAGCGGGGTTTAATTAG
- Protein Sequence
- MSQTTIELDPLSYEYQQYNFNAAPVTSSYGYEVKVEQNVLLDQFLNNVQGSGDKVLTNINDTSTRMNSNKCNNENKYSDNTQPHVDMKPLLNFKVKKEKNKKSSYWSEKITDHNFKFYGCSVCNISFETLANLDQHVTIHKDRITSYDLKIKNMLKRKKMKEEKKKLKKLKKCKKDEPAPEVEIKPEDGYIGNEKASDYNDGVSNNENKPTNVENDVKPVSNGSLVENNSNDDKDKLNLEKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAVCGQSFITASKLGRHNKKIHLAIRHQCRICFRFFAKFENLTTHFDKKHPDDKLEGEPYDYNEILPYLKELEEELRVKAEREKACSKENVDIWGEIDKPKEEKVQDATEIEAKEEKTAEIMVDNDMKVIVEIEEVKVDPPDVEIKQEPEEPSCQIKSDDEGSLKDERFSDDDYFPSNTWATSPKTSAPPSPNPQQAQSPPSALIDVNKQNKKKLKKKTKTLSVCMYKEKKYIDSTPVRKLGEPSREEQARNTEGKETKTECEDKMADDGQNGAEENTDKLRHRKRKGKVKVGKKKSTKMSPGKTRPHSCDFCGKKFLHLDTLQVHMKCHSGEERVHKCSFCLELCDSEAELRQHEASHAGPKPFLCTRCGKTYKKRESMVYHRKLHELDKQYTCNVCPKSFNAAFKLQRHLASHRANQFVLRYECPVCAHMFHTKYHVQMHLATHQREGLIVEANRNEILAMVLQNAHKIPRQQDGTGGSALTNAAPTDERSRICNICGEIFQHFYYLEEHIKEHGSKIAVEDLDKDEIKKHVCQVCNKGFKLHYYLKLHMFTHSKEKPFICQQCGKGFITKGKLKRHLETHSGLKKYQCHICHKYFTRTSYLRIHVRTIHGNQDYNFTLEKQCRWNGGGEPHPGQRAGFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -